Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0015049

Physical Location & Seq

Genomic Coordinates Forward (+)

64512015 .. 64515387

Gene Structure 3373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG480700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTCAATGAAGAAGAACAGTTGCGTGTGGTTCGTGTTGGGGCTGGCGATACTGTTCGTGTCGACTGAGTTTGTTCAAGTTGATTGCAGAGCGCTTCGATCCGAGTCGGCGACTGGTGAGGGATGCAAAGAGCAGGCTGGTGGAGCTGAGGAGATGGCCGGAATGGGAAGCTTTGCGGTTTCGTCTAGTTTCAACTCATCGAGCAATGATAATAGTACTCATCGGCCTTCGGTGAGGAGCTTGATGTTTAGGTTGGCTTCTGGACCTAGCAAAAAAGAAACTGAAGAATTTGCACTATCACATGACAAAAAGGTAAAAATTAGCTTAACACAAAATGAAGGTGGAATTCCAGCAAACCATGAAAACACCAAACACATTTCCTTTCCCAATCATCTACAACTGACCAGTTTTAACATGCATGAACAAGAAATAGAACTGTATATAAGAATGCTTCGAGGGACATTGGCCAATATCCCCTTTGACCAAAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

18.1

Weight (kDa)

6.59

Isoelectric Point (pI)

57.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47130 AT5G43064 AT5G43066 AT5G43068
fragaria_vesca	FvH4_2g33680
prunus_persica	Prupe.1G429100_v2.0.a1
pyrus_communis	pycom08g07400 pycom15g07090
rosa_laevigata	RLG00000010610
rosa_multiflora	Rmu_sc0004046.1_g000013
rosa_roxburghii	Rroxscaffold_7G00159830
rosa_rugosa	Rorug06G0368900
rosa_samantha	Rh6AG480400 Rh6CG495300 Rh6DG480700
rosa_wichuraiana	Rw6G041870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	62
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	1 cut(s)	93
AcoI	YGGCCR	2 cut(s)	156, 465
AcsI	RAATTY	2 cut(s)	287, 345
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	1 cut(s)	217
AfeI	AGCGCT	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	77, 193
AluBI	AGCT	5 cut(s)	146, 171, 240, 324, 491
AluI	AGCT	5 cut(s)	146, 171, 240, 324, 491
AlwI	GGATC	1 cut(s)	93
Aor51HI	AGCGCT	1 cut(s)	93
AoxI	GGCC	3 cut(s)	156, 224, 465
ApoI	RAATTY	2 cut(s)	287, 345
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	2 cut(s)	128, 244
AvaII	GGWCC	1 cut(s)	263
BalI	TGGCCA	1 cut(s)	467
BbvCI	CCTCAGC	1 cut(s)	147
BccI	CCATC	1 cut(s)	148
BfaI	CTAG	2 cut(s)	186, 267
BfoI	RGCGCY	1 cut(s)	95
BmcAI	AGTACT	1 cut(s)	217
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmsI	GCATC	1 cut(s)	113
Bpu10I	CCTNAGC	1 cut(s)	147
Bse1I	ACTGG	2 cut(s)	118, 405
Bse3DI	GCAATG	1 cut(s)	211
BseGI	GGATG	1 cut(s)	128
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	2 cut(s)	57, 138
BseNI	ACTGG	2 cut(s)	118, 405
BseRI	GAGGAG	2 cut(s)	164, 250
BshFI	GGCC	3 cut(s)	158, 226, 467
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	472
BsmFI	GGGAC	1 cut(s)	472
BsmI	GAATGC	1 cut(s)	453
BsnI	GGCC	3 cut(s)	158, 226, 467
Bsp143I	GATC	1 cut(s)	98
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	3 cut(s)	158, 226, 467
BspCNI	CTCAG	2 cut(s)	58, 139
BspPI	GGATC	1 cut(s)	93
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	118, 405
BssMI	GATC	1 cut(s)	98
Bst4CI	ACNGT	3 cut(s)	20, 54, 438
BstC8I	GCNNGC	2 cut(s)	45, 135
BstDEI	CTNAG	2 cut(s)	66, 147
BstF5I	GGATG	1 cut(s)	128
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	98
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	418
BsuRI	GGCC	3 cut(s)	158, 226, 467
BtsCI	GGATG	1 cut(s)	128
Cac8I	GCNNGC	2 cut(s)	45, 135
CfoI	GCGC	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	4 cut(s)	302, 359, 415, 419
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	2 cut(s)	66, 147
DpnI	GATC	1 cut(s)	100
DpnII	GATC	1 cut(s)	98
EaeI	YGGCCR	2 cut(s)	156, 465
Eco47I	GGWCC	1 cut(s)	263
Eco47III	AGCGCT	1 cut(s)	93
Eco57I	CTGAAG	1 cut(s)	303
EcoRI	GAATTC	1 cut(s)	345
EcoT22I	ATGCAT	1 cut(s)	420
FaeI	CATG	4 cut(s)	305, 362, 418, 422
FaiI	YATR	6 cut(s)	303, 360, 416, 420, 441, 443
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	4 cut(s)	301, 358, 414, 418
FblI	GTMKAC	1 cut(s)	62
FokI	GGATG	1 cut(s)	135
FspBI	CTAG	2 cut(s)	186, 267
GlaI	GCGC	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	3 cut(s)	158, 226, 467
HapII	CCGG	1 cut(s)	159
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	4 cut(s)	305, 362, 418, 422
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HindIII	AAGCTT	2 cut(s)	169, 489
HinfI	GANTC	1 cut(s)	104
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	2 cut(s)	128, 244
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	1 cut(s)	261
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	2 cut(s)	237, 332
HpyCH4III	ACNGT	3 cut(s)	20, 54, 438
HpyCH4V	TGCA	4 cut(s)	87, 126, 293, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	2 cut(s)	66, 147
Hsp92II	CATG	4 cut(s)	305, 362, 418, 422
HspAI	GCGC	1 cut(s)	92
Kzo9I	GATC	1 cut(s)	98
LmnI	GCTCC	2 cut(s)	143, 237
LpnPI	CCDG	8 cut(s)	29, 99, 119, 123, 172, 246, 363, 418
LweI	GCATC	1 cut(s)	113
MaeI	CTAG	2 cut(s)	186, 267
MalI	GATC	1 cut(s)	100
MboI	GATC	1 cut(s)	98
MboII	GAAGA	3 cut(s)	22, 25, 296
MlsI	TGGCCA	1 cut(s)	467
MluCI	AATT	3 cut(s)	287, 318, 345
MluNI	TGGCCA	1 cut(s)	467
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	4 cut(s)	112, 142, 228, 449
Mox20I	TGGCCA	1 cut(s)	467
Mph1103I	ATGCAT	1 cut(s)	420
MscI	TGGCCA	1 cut(s)	467
MseI	TTAA	3 cut(s)	326, 411, 493
Msp20I	TGGCCA	1 cut(s)	467
MspI	CCGG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	453
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	1 cut(s)	98
NlaIII	CATG	4 cut(s)	305, 362, 418, 422
NsiI	ATGCAT	1 cut(s)	420
NspI	RCATGY	1 cut(s)	418
PctI	GAATGC	1 cut(s)	453
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PspPI	GGNCC	1 cut(s)	263
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
SalI	GTCGAC	1 cut(s)	61
SaqAI	TTAA	3 cut(s)	326, 411, 493
Sau3AI	GATC	1 cut(s)	98
Sau96I	GGNCC	1 cut(s)	263
ScaI	AGTACT	1 cut(s)	217
SchI	GAGTC	1 cut(s)	113
SetI	ASST	9 cut(s)	148, 173, 242, 254, 268, 315, 326, 343, 493
SfaNI	GCATC	1 cut(s)	113
SinI	GGWCC	1 cut(s)	263
Sse9I	AATT	3 cut(s)	287, 318, 345
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	2 cut(s)	186, 267
TaaI	ACNGT	3 cut(s)	20, 54, 438
TaqI	TCGA	4 cut(s)	62, 97, 200, 454
TasI	AATT	3 cut(s)	287, 318, 345
TatI	WGTACW	1 cut(s)	215
Tru1I	TTAA	3 cut(s)	326, 411, 493
Tru9I	TTAA	3 cut(s)	326, 411, 493
TspDTI	ATGAA	4 cut(s)	23, 351, 375, 435
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	2 cut(s)	287, 345
XceI	RCATGY	1 cut(s)	418
XmiI	GTMKAC	1 cut(s)	62
XspI	CTAG	2 cut(s)	186, 267
ZrmI	AGTACT	1 cut(s)	217
Zsp2I	ATGCAT	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.