pycom08g07400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0015049
Physical Location & Seq
Reverse (-)
5978648 .. 5978965
318 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g07400.1

Sequence Viewer

Length: 318 bp
ATGTCAATGAAGAAGAACTCGGCAGGATCAAGTTCCAGCTGCGTGTGGGTTGTGGTGGGGTTGATGGTACTGATTGTGTCGTCGCAGTTTGCTCAAGTTGATTGCCGAACCCTGAAATCGACGGCGAACTATAATGCTGCCAGCCCTAGTGGCGGATGCAAAGGTGGTGATGGGGCTGAGGAGGCAGCGGGAGGAATGGCTAACTTTGCTGTTTCTTCCAACTACAACTCGAGCAGCAGGACGGACCGTCGTCCTTCGATGAAGAGCTTGGCTTTTAGATTGGCCTCTGGACCTAGTAAAAAAGGCCCCGGCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

10.74

Weight (kDa)

9.78

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47130 AT5G43064 AT5G43066 AT5G43068
fragaria_vesca FvH4_2g33680
prunus_persica Prupe.1G429100_v2.0.a1
pyrus_communis pycom08g07400 pycom15g07090
rosa_laevigata RLG00000010610
rosa_multiflora Rmu_sc0004046.1_g000013
rosa_roxburghii Rroxscaffold_7G00159830
rosa_rugosa Rorug06G0368900
rosa_samantha Rh6AG480400 Rh6CG495300 Rh6DG480700
rosa_wichuraiana Rw6G041870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 153, 188
AclWI GGATC 1 cut(s) 34
AcoI YGGCCR 1 cut(s) 310
AfaI GTAC 1 cut(s) 69
AfiI CCNNNNNNNGG 1 cut(s) 152
AhdI GACNNNNNGTC 1 cut(s) 246
AluBI AGCT 2 cut(s) 39, 267
AluI AGCT 2 cut(s) 39, 267
AlwI GGATC 1 cut(s) 34
Ama87I CYCGRG 1 cut(s) 229
AoxI GGCC 3 cut(s) 282, 304, 310
ApeKI GCWGC 4 cut(s) 39, 137, 185, 234
AspS9I GGNCC 3 cut(s) 244, 290, 305
AsuC2I CCSGG 1 cut(s) 309
AsuHPI GGTGA 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 229
AvaII GGWCC 2 cut(s) 244, 290
BbvCI CCTCAGC 1 cut(s) 177
BbvI GCAGC 4 cut(s) 26, 124, 197, 246
BccI CCATC 2 cut(s) 58, 164
BceAI ACGGC 1 cut(s) 138
BcnI CCSGG 1 cut(s) 309
BfaI CTAG 2 cut(s) 147, 294
BglI GCCNNNNNGGC 1 cut(s) 150
BisI GCNGC 4 cut(s) 40, 138, 186, 235
BlsI GCNGC 4 cut(s) 41, 139, 187, 236
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 2 cut(s) 244, 290
BmeRI GACNNNNNGTC 1 cut(s) 246
BmeT110I CYCGRG 1 cut(s) 229
BmgT120I GGNCC 3 cut(s) 244, 290, 305
BmiI GGNNCC 1 cut(s) 307
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 1 cut(s) 146
BoxI GACNNNNGTC 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 78
BpuMI CCSGG 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 307
Bsc4I CCNNNNNNNGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 307
BseGI GGATG 1 cut(s) 161
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMII CTCAG 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 4 cut(s) 26, 124, 197, 246
BshFI GGCC 3 cut(s) 284, 306, 312
BsiHKCI CYCGRG 1 cut(s) 229
BsiSI CCGG 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 152
BsnI GGCC 3 cut(s) 284, 306, 312
BsoBI CYCGRG 1 cut(s) 229
Bsp143I GATC 1 cut(s) 26
BspACI CCGC 2 cut(s) 153, 188
BspANI GGCC 3 cut(s) 284, 306, 312
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 307
BspPI GGATC 1 cut(s) 34
BspQI GCTCTTC 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 248
Bst6I CTCTTC 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 161
BstKTI GATC 1 cut(s) 29
BstMBI GATC 1 cut(s) 26
BstMWI GCNNNNNNNGC 3 cut(s) 150, 182, 206
BstPAI GACNNNNGTC 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 307
BstV1I GCAGC 4 cut(s) 26, 124, 197, 246
BsuRI GGCC 3 cut(s) 284, 306, 312
BtsCI GGATG 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 142
Cfr13I GGNCC 3 cut(s) 244, 290, 305
CpoI CGGWCCG 1 cut(s) 244
Csp6I GTAC 1 cut(s) 68
CspI CGGWCCG 1 cut(s) 244
CviJI RGCY 9 cut(s) 39, 144, 176, 200, 267, 272, 284, 306, 312
CviKI_1 RGCY 9 cut(s) 39, 144, 176, 200, 267, 272, 284, 306, 312
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 1 cut(s) 177
DpnI GATC 1 cut(s) 28
DpnII GATC 1 cut(s) 26
DriI GACNNNNNGTC 1 cut(s) 246
EaeI YGGCCR 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 257
Eam1105I GACNNNNNGTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 257
EciI GGCGGA 1 cut(s) 168
Eco47I GGWCC 2 cut(s) 244, 290
Eco88I CYCGRG 1 cut(s) 229
EcoO109I RGGNCCY 1 cut(s) 305
FaiI YATR 1 cut(s) 132
FauI CCCGC 1 cut(s) 181
Fnu4HI GCNGC 4 cut(s) 40, 138, 186, 235
FokI GGATG 1 cut(s) 168
Fsp4HI GCNGC 4 cut(s) 40, 138, 186, 235
FspBI CTAG 2 cut(s) 147, 294
GluI GCNGC 4 cut(s) 40, 138, 186, 235
HaeIII GGCC 3 cut(s) 284, 306, 312
HapII CCGG 1 cut(s) 309
HpaII CCGG 1 cut(s) 309
HphI GGTGA 1 cut(s) 179
Hpy188III TCNNGA 1 cut(s) 288
Hpy99I CGWCG 3 cut(s) 85, 124, 252
HpyAV CCTTC 1 cut(s) 264
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4V TGCA 1 cut(s) 159
HpyF10VI GCNNNNNNNGC 3 cut(s) 150, 182, 206
HpyF3I CTNAG 1 cut(s) 177
Kzo9I GATC 1 cut(s) 26
LguI GCTCTTC 1 cut(s) 257
LpnPI CCDG 6 cut(s) 9, 49, 125, 154, 223, 273
Lsp1109I GCAGC 4 cut(s) 26, 124, 197, 246
LweI GCATC 1 cut(s) 146
MaeI CTAG 2 cut(s) 147, 294
MalI GATC 1 cut(s) 28
MboI GATC 1 cut(s) 26
MboII GAAGA 4 cut(s) 22, 25, 207, 274
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 4 cut(s) 172, 175, 185, 295
MspA1I CMGCKG 2 cut(s) 39, 188
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 309
MwoI GCNNNNNNNGC 3 cut(s) 150, 182, 206
NciI CCSGG 1 cut(s) 309
NdeII GATC 1 cut(s) 26
NlaIV GGNNCC 1 cut(s) 307
PaeR7I CTCGAG 1 cut(s) 229
PciSI GCTCTTC 1 cut(s) 257
PkrI GCNGC 4 cut(s) 41, 139, 187, 236
PshAI GACNNNNGTC 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 307
PspPI GGNCC 3 cut(s) 244, 290, 305
PspXI VCTCGAGB 1 cut(s) 229
PvuII CAGCTG 1 cut(s) 39
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
Rsr2I CGGWCCG 1 cut(s) 244
RsrII CGGWCCG 1 cut(s) 244
SapI GCTCTTC 1 cut(s) 257
SatI GCNGC 4 cut(s) 40, 138, 186, 235
Sau3AI GATC 1 cut(s) 26
Sau96I GGNCC 3 cut(s) 244, 290, 305
ScrFI CCNGG 1 cut(s) 309
SetI ASST 4 cut(s) 41, 166, 269, 295
SfaNI GCATC 1 cut(s) 146
Sfr274I CTCGAG 1 cut(s) 229
SinI GGWCC 2 cut(s) 244, 290
SlaI CTCGAG 1 cut(s) 229
SmlI CTYRAG 2 cut(s) 93, 229
SmoI CTYRAG 2 cut(s) 93, 229
SsiI CCGC 2 cut(s) 153, 188
SspMI CTAG 2 cut(s) 147, 294
StyD4I CCNGG 1 cut(s) 307
TaaI ACNGT 1 cut(s) 248
TaqI TCGA 3 cut(s) 119, 230, 257
TseI GCWGC 4 cut(s) 39, 137, 185, 234
TspDTI ATGAA 2 cut(s) 23, 275
TspGWI ACGGA 1 cut(s) 257
VpaK11BI GGWCC 2 cut(s) 244, 290
XhoI CTCGAG 1 cut(s) 229
XspI CTAG 2 cut(s) 147, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.