pycom15g07090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015049
Physical Location & Seq
Reverse (-)
4319901 .. 4320212
312 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g07090.1

Sequence Viewer

Length: 312 bp
ATGTCAATGAAGAATTCGGCAAGTTCCAGGTGCGTGTGGGTTGTGATGGGGCTCATGGTGCTGATTGTGTCCTCGCAGTTTTCTCAAGTGGATTGCCGAACCCTAAAATCAAGGACGGCGAGCGATAATGCCACTACCACTCGTGGCGGATGCAAAGGTGGTGATGGGGCTGAGAAGGCAGGAGGAGGAATGGCTACCCTTGCTGTTTCTTCTAACTACAACTCGAGCAGCAGTACGGATCGTCGTCCTTCGATGAGGAACTTGGCCTTTAGATTGGCCTCTGGACCTAGCAAAAAAGGCCCTGGCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

10.71

Weight (kDa)

10.38

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47130 AT5G43064 AT5G43066 AT5G43068
fragaria_vesca FvH4_2g33680
prunus_persica Prupe.1G429100_v2.0.a1
pyrus_communis pycom08g07400 pycom15g07090
rosa_laevigata RLG00000010610
rosa_multiflora Rmu_sc0004046.1_g000013
rosa_roxburghii Rroxscaffold_7G00159830
rosa_rugosa Rorug06G0368900
rosa_samantha Rh6AG480400 Rh6CG495300 Rh6DG480700
rosa_wichuraiana Rw6G041870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 147
AclWI GGATC 1 cut(s) 246
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 1 cut(s) 13
AfaI GTAC 1 cut(s) 235
AjnI CCWGG 2 cut(s) 26, 301
AlwI GGATC 1 cut(s) 246
Ama87I CYCGRG 1 cut(s) 223
AoxI GGCC 4 cut(s) 264, 276, 298, 304
ApeKI GCWGC 1 cut(s) 228
ApoI RAATTY 1 cut(s) 13
AspS9I GGNCC 2 cut(s) 284, 299
AsuHPI GGTGA 1 cut(s) 173
AvaI CYCGRG 1 cut(s) 223
AvaII GGWCC 1 cut(s) 284
BalI TGGCCA 1 cut(s) 306
BanII GRGCYC 1 cut(s) 54
BauI CACGAG 1 cut(s) 141
BbvI GCAGC 1 cut(s) 240
BccI CCATC 2 cut(s) 40, 158
BceAI ACGGC 1 cut(s) 132
BciT130I CCWGG 2 cut(s) 28, 303
BfaI CTAG 1 cut(s) 288
BisI GCNGC 1 cut(s) 229
BlsI GCNGC 1 cut(s) 230
Bme1390I CCNGG 2 cut(s) 28, 303
Bme18I GGWCC 1 cut(s) 284
BmeT110I CYCGRG 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 284, 299
BmrFI CCNGG 2 cut(s) 28, 303
BmsI GCATC 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 301
BseBI CCWGG 2 cut(s) 28, 303
BseDI CCNNGG 1 cut(s) 301
BseGI GGATG 1 cut(s) 155
BseMII CTCAG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 240
BshFI GGCC 4 cut(s) 266, 278, 300, 306
BsiHKCI CYCGRG 1 cut(s) 223
BsnI GGCC 4 cut(s) 266, 278, 300, 306
BsoBI CYCGRG 1 cut(s) 223
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 1 cut(s) 147
BspANI GGCC 4 cut(s) 266, 278, 300, 306
BspCNI CTCAG 1 cut(s) 163
BspPI GGATC 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 1 cut(s) 238
BssSI CACGAG 1 cut(s) 141
Bst2BI CACGAG 1 cut(s) 141
Bst2UI CCWGG 2 cut(s) 28, 303
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 1 cut(s) 171
BstF5I GGATG 1 cut(s) 155
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 4 cut(s) 58, 176, 200, 297
BstNI CCWGG 2 cut(s) 28, 303
BstSCI CCNGG 2 cut(s) 26, 301
BstV1I GCAGC 1 cut(s) 240
BsuRI GGCC 4 cut(s) 266, 278, 300, 306
BtsCI GGATG 1 cut(s) 155
Cac8I GCNNGC 1 cut(s) 121
Cfr13I GGNCC 2 cut(s) 284, 299
Csp6I GTAC 1 cut(s) 234
CviAII CATG 1 cut(s) 55
CviJI RGCY 7 cut(s) 52, 170, 194, 266, 278, 300, 306
CviKI_1 RGCY 7 cut(s) 52, 170, 194, 266, 278, 300, 306
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 1 cut(s) 171
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 304
EciI GGCGGA 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 284
Eco88I CYCGRG 1 cut(s) 223
EcoO109I RGGNCCY 1 cut(s) 299
EcoRI GAATTC 1 cut(s) 13
EcoRII CCWGG 2 cut(s) 26, 301
EcoT38I GRGCYC 1 cut(s) 54
FaeI CATG 1 cut(s) 58
FaiI YATR 1 cut(s) 56
FatI CATG 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 229
FokI GGATG 1 cut(s) 162
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 229
FspBI CTAG 1 cut(s) 288
GluI GCNGC 1 cut(s) 229
HaeIII GGCC 4 cut(s) 266, 278, 300, 306
Hin1II CATG 1 cut(s) 58
HphI GGTGA 1 cut(s) 173
Hpy188III TCNNGA 1 cut(s) 282
Hpy99I CGWCG 1 cut(s) 246
HpyAV CCTTC 2 cut(s) 169, 258
HpyCH4V TGCA 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 4 cut(s) 58, 176, 200, 297
HpyF3I CTNAG 1 cut(s) 171
Hsp92II CATG 1 cut(s) 58
Kzo9I GATC 1 cut(s) 238
LpnPI CCDG 5 cut(s) 13, 40, 165, 267, 288
Lsp1109I GCAGC 1 cut(s) 240
LweI GCATC 1 cut(s) 140
MaeI CTAG 1 cut(s) 288
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 2 cut(s) 22, 201
MhlI GDGCHC 1 cut(s) 54
MlsI TGGCCA 1 cut(s) 306
MluCI AATT 1 cut(s) 13
MluNI TGGCCA 1 cut(s) 306
MnlI CCTC 5 cut(s) 82, 176, 179, 249, 289
Mox20I TGGCCA 1 cut(s) 306
MscI TGGCCA 1 cut(s) 306
Msp20I TGGCCA 1 cut(s) 306
MspR9I CCNGG 2 cut(s) 28, 303
MvaI CCWGG 2 cut(s) 28, 303
MwoI GCNNNNNNNGC 4 cut(s) 58, 176, 200, 297
NdeII GATC 1 cut(s) 238
NlaIII CATG 1 cut(s) 58
PaeR7I CTCGAG 1 cut(s) 223
PkrI GCNGC 1 cut(s) 230
Psp6I CCWGG 2 cut(s) 26, 301
PspGI CCWGG 2 cut(s) 26, 301
PspPI GGNCC 2 cut(s) 284, 299
PspXI VCTCGAGB 1 cut(s) 223
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SatI GCNGC 1 cut(s) 229
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 2 cut(s) 284, 299
ScrFI CCNGG 2 cut(s) 28, 303
SduI GDGCHC 1 cut(s) 54
SetI ASST 3 cut(s) 32, 160, 289
SfaNI GCATC 1 cut(s) 140
Sfr274I CTCGAG 1 cut(s) 223
SinI GGWCC 1 cut(s) 284
SlaI CTCGAG 1 cut(s) 223
SmlI CTYRAG 2 cut(s) 84, 223
SmoI CTYRAG 2 cut(s) 84, 223
Sse9I AATT 1 cut(s) 13
SsiI CCGC 1 cut(s) 147
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 2 cut(s) 26, 301
TaqI TCGA 2 cut(s) 224, 251
TasI AATT 1 cut(s) 13
TseI GCWGC 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 23
TspGWI ACGGA 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 284
XapI RAATTY 1 cut(s) 13
XhoI CTCGAG 1 cut(s) 223
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.