RLG00000010610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015049
Physical Location & Seq
Reverse (-)
2953985 .. 2954431
447 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010610

Sequence Viewer

Length: 345 bp
ATGTCAATGAAGAAGAACAGTTGCGTCTGGTTCATGCTGGGGCTGGCGATGGTGATCGTGTCGACTGAGTTTGTTCGAGTTGATTGCAGAGCGCTTCGATCCGACTCGGCGACTGGCGAGGGATGCAAAGAGCAGGCTGGTGGAGCTGAGGAGATGGCCGGAATGGGAAGCTTTGCGGTTTCGTCTAGTTTCAACTCATCGGGCAATAATAATAGTACTCATCGGCCTTCAGTGAGGAGCTTGATGTTTAGGTTGTGTGACTTGGGTCTTGCAACTTTGTATCCAACTGGGATTTTTATACTCACAGATGTGATCTCGATCATACATGTAATCTTTCAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.32

Weight (kDa)

6.7

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47130 AT5G43064 AT5G43066 AT5G43068
fragaria_vesca FvH4_2g33680
prunus_persica Prupe.1G429100_v2.0.a1
pyrus_communis pycom08g07400 pycom15g07090
rosa_laevigata RLG00000010610
rosa_multiflora Rmu_sc0004046.1_g000013
rosa_roxburghii Rroxscaffold_7G00159830
rosa_rugosa Rorug06G0368900
rosa_samantha Rh6AG480400 Rh6CG495300 Rh6DG480700
rosa_wichuraiana Rw6G041870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 62
AciI CCGC 1 cut(s) 176
AclWI GGATC 1 cut(s) 93
AcoI YGGCCR 1 cut(s) 156
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 1 cut(s) 217
AfeI AGCGCT 1 cut(s) 93
AflIII ACRYGT 1 cut(s) 325
AgsI TTSAA 1 cut(s) 193
AleI CACNNNNGTG 1 cut(s) 308
AluBI AGCT 3 cut(s) 146, 171, 240
AluI AGCT 3 cut(s) 146, 171, 240
AlwI GGATC 1 cut(s) 93
Aor51HI AGCGCT 1 cut(s) 93
AoxI GGCC 2 cut(s) 156, 224
AspLEI GCGC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 64
BbvCI CCTCAGC 1 cut(s) 147
BccI CCATC 2 cut(s) 43, 148
BcgI CGANNNNNNTGC 2 cut(s) 66, 100
BciVI GTATCC 1 cut(s) 291
BfaI CTAG 1 cut(s) 186
BfoI RGCGCY 1 cut(s) 95
BfuI GTATCC 1 cut(s) 291
BmcAI AGTACT 1 cut(s) 217
BmrI ACTGGG 1 cut(s) 297
BmsI GCATC 1 cut(s) 113
BmuI ACTGGG 1 cut(s) 297
BoxI GACNNNNGTC 1 cut(s) 264
Bpu10I CCTNAGC 1 cut(s) 147
BsaBI GATNNNNATC 2 cut(s) 53, 317
Bse1I ACTGG 2 cut(s) 118, 292
Bse8I GATNNNNATC 2 cut(s) 53, 317
BseGI GGATG 1 cut(s) 128
BseJI GATNNNNATC 2 cut(s) 53, 317
BseMII CTCAG 2 cut(s) 57, 138
BseNI ACTGG 2 cut(s) 118, 292
BseRI GAGGAG 2 cut(s) 164, 250
BseYI CCCAGC 1 cut(s) 37
BshFI GGCC 2 cut(s) 158, 226
BsiSI CCGG 1 cut(s) 159
BsnI GGCC 2 cut(s) 158, 226
Bsp143I GATC 4 cut(s) 54, 98, 312, 318
BspACI CCGC 1 cut(s) 176
BspANI GGCC 2 cut(s) 158, 226
BspCNI CTCAG 2 cut(s) 58, 139
BspPI GGATC 1 cut(s) 93
BsrI ACTGG 2 cut(s) 118, 292
BssMI GATC 4 cut(s) 54, 98, 312, 318
Bst4CI ACNGT 1 cut(s) 20
BstC8I GCNNGC 2 cut(s) 45, 135
BstDEI CTNAG 2 cut(s) 66, 147
BstF5I GGATG 1 cut(s) 128
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 4 cut(s) 57, 101, 315, 321
BstMBI GATC 4 cut(s) 54, 98, 312, 318
BstMWI GCNNNNNNNGC 2 cut(s) 123, 143
BstNSI RCATGY 1 cut(s) 329
BstPAI GACNNNNGTC 1 cut(s) 264
BsuI GTATCC 1 cut(s) 291
BsuRI GGCC 2 cut(s) 158, 226
BtgZI GCGATG 1 cut(s) 62
BtsCI GGATG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 2 cut(s) 45, 135
CfoI GCGC 1 cut(s) 94
CseI GACGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 216
CviAII CATG 2 cut(s) 34, 326
CviJI RGCY 7 cut(s) 43, 137, 146, 158, 171, 226, 240
CviKI_1 RGCY 7 cut(s) 43, 137, 146, 158, 171, 226, 240
CviQI GTAC 1 cut(s) 216
DdeI CTNAG 2 cut(s) 66, 147
DpnI GATC 4 cut(s) 56, 100, 314, 320
DpnII GATC 4 cut(s) 54, 98, 312, 318
EaeI YGGCCR 1 cut(s) 156
Eco47III AGCGCT 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 213
FaeI CATG 2 cut(s) 37, 329
FaiI YATR 4 cut(s) 35, 299, 323, 327
FatI CATG 2 cut(s) 33, 325
FblI GTMKAC 1 cut(s) 62
FokI GGATG 1 cut(s) 135
FspBI CTAG 1 cut(s) 186
GlaI GCGC 1 cut(s) 93
GsaI CCCAGC 1 cut(s) 41
HaeII RGCGCY 1 cut(s) 95
HaeIII GGCC 2 cut(s) 158, 226
HapII CCGG 1 cut(s) 159
HgaI GACGC 1 cut(s) 13
HhaI GCGC 1 cut(s) 94
Hin1II CATG 2 cut(s) 37, 329
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HindIII AAGCTT 1 cut(s) 169
HinfI GANTC 1 cut(s) 104
HpaII CCGG 1 cut(s) 159
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 2 cut(s) 103, 339
Hpy188III TCNNGA 1 cut(s) 316
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 1 cut(s) 237
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4V TGCA 3 cut(s) 87, 126, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 143
HpyF3I CTNAG 2 cut(s) 66, 147
Hsp92II CATG 2 cut(s) 37, 329
HspAI GCGC 1 cut(s) 92
Kzo9I GATC 4 cut(s) 54, 98, 312, 318
LmnI GCTCC 2 cut(s) 143, 237
LpnPI CCDG 8 cut(s) 13, 23, 29, 99, 119, 123, 172, 273
LweI GCATC 1 cut(s) 113
MaeI CTAG 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 257
MalI GATC 4 cut(s) 56, 100, 314, 320
MboI GATC 4 cut(s) 54, 98, 312, 318
MboII GAAGA 2 cut(s) 22, 25
MluCI AATT 1 cut(s) 340
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 2 cut(s) 126, 308
MnlI CCTC 3 cut(s) 112, 142, 228
MslI CAYNNNNRTG 1 cut(s) 308
MspI CCGG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 123, 143
NdeII GATC 4 cut(s) 54, 98, 312, 318
NlaIII CATG 2 cut(s) 37, 329
NmeAIII GCCGAG 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 257
NspI RCATGY 1 cut(s) 329
OliI CACNNNNGTG 1 cut(s) 308
PciI ACATGT 1 cut(s) 325
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PscI ACATGT 1 cut(s) 325
PshAI GACNNNNGTC 1 cut(s) 264
PspFI CCCAGC 1 cut(s) 37
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
RseI CAYNNNNRTG 1 cut(s) 308
SalI GTCGAC 1 cut(s) 61
Sau3AI GATC 4 cut(s) 54, 98, 312, 318
ScaI AGTACT 1 cut(s) 217
SchI GAGTC 1 cut(s) 98
SetI ASST 4 cut(s) 148, 173, 242, 254
SfaNI GCATC 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 308
Sse9I AATT 1 cut(s) 340
SsiI CCGC 1 cut(s) 176
SspMI CTAG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 20
TaqI TCGA 4 cut(s) 62, 76, 97, 317
TasI AATT 1 cut(s) 340
TatI WGTACW 1 cut(s) 215
TscAI CASTG 1 cut(s) 237
TseFI GTSAC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 2 cut(s) 22, 23
TspRI CASTG 1 cut(s) 237
XceI RCATGY 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 62
XspI CTAG 1 cut(s) 186
ZrmI AGTACT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.