Prupe.1G429100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015049
Physical Location & Seq
Reverse (-)
36834131 .. 36834823
693 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G429100.1

Sequence Viewer

Length: 306 bp
ATGGCAATGAGAATGAAGAAGAGCTCAACAGCATCAACCAGTTGCGTTTGGCTTGTGATGGGGTTGATGGTGCTGCTGATTGTGTCAACAGAGTTCGGTCAAGTTGATTGCAGAGCCCTTCGATCAGCAACAAGCGACAGCGGCAGTGATGGCGGATGCAAAGGAATTGATGGGGCTGAGGAGGTAGGCATGGCTACCTTTGCTGTTTCTTCTAACTACAACTCGAGCACTGCTCGTCGTCCTTCAGTGAGGAGCTTGGCGTTTAGTTTGGCCTCTGGACCTAGCAAAAAAGGCCCTGGCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

10.44

Weight (kDa)

9.3

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47130 AT5G43064 AT5G43066 AT5G43068
fragaria_vesca FvH4_2g33680
prunus_persica Prupe.1G429100_v2.0.a1
pyrus_communis pycom08g07400 pycom15g07090
rosa_laevigata RLG00000010610
rosa_multiflora Rmu_sc0004046.1_g000013
rosa_roxburghii Rroxscaffold_7G00159830
rosa_rugosa Rorug06G0368900
rosa_samantha Rh6AG480400 Rh6CG495300 Rh6DG480700
rosa_wichuraiana Rw6G041870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 141, 153
AcoI YGGCCR 1 cut(s) 298
AcuI CTGAAG 1 cut(s) 228
AjnI CCWGG 1 cut(s) 295
AluBI AGCT 2 cut(s) 24, 255
AluI AGCT 2 cut(s) 24, 255
Alw21I GWGCWC 2 cut(s) 26, 230
Ama87I CYCGRG 1 cut(s) 223
AoxI GGCC 3 cut(s) 270, 292, 298
ApeKI GCWGC 1 cut(s) 73
AspS9I GGNCC 2 cut(s) 278, 293
AvaI CYCGRG 1 cut(s) 223
AvaII GGWCC 1 cut(s) 278
BalI TGGCCA 1 cut(s) 300
BanII GRGCYC 2 cut(s) 26, 118
Bbv12I GWGCWC 2 cut(s) 26, 230
BbvCI CCTCAGC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 60
BccI CCATC 4 cut(s) 52, 61, 143, 164
BciT130I CCWGG 1 cut(s) 297
BfaI CTAG 1 cut(s) 282
BisI GCNGC 2 cut(s) 74, 142
BlsI GCNGC 2 cut(s) 75, 143
Bme1390I CCNGG 1 cut(s) 297
Bme18I GGWCC 1 cut(s) 278
BmeT110I CYCGRG 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 278, 293
BmrFI CCNGG 1 cut(s) 297
BmsI GCATC 2 cut(s) 41, 146
BplI GAGNNNNNCTC 2 cut(s) 217, 249
Bpu10I CCTNAGC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 295
Bse1I ACTGG 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 1 cut(s) 161
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 39
BseRI GAGGAG 2 cut(s) 194, 265
BseXI GCAGC 1 cut(s) 60
BshFI GGCC 3 cut(s) 272, 294, 300
BsiHKAI GWGCWC 2 cut(s) 26, 230
BsiHKCI CYCGRG 1 cut(s) 223
BsnI GGCC 3 cut(s) 272, 294, 300
BsoBI CYCGRG 1 cut(s) 223
Bsp1286I GDGCHC 3 cut(s) 26, 118, 230
Bsp143I GATC 1 cut(s) 122
BspACI CCGC 2 cut(s) 141, 153
BspANI GGCC 3 cut(s) 272, 294, 300
BspCNI CTCAG 1 cut(s) 169
BspQI GCTCTTC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 1 cut(s) 39
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 1 cut(s) 122
Bst2UI CCWGG 1 cut(s) 297
Bst6I CTCTTC 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 161
BstKTI GATC 1 cut(s) 125
BstMBI GATC 1 cut(s) 122
BstMWI GCNNNNNNNGC 4 cut(s) 141, 150, 200, 291
BstNI CCWGG 1 cut(s) 297
BstSCI CCNGG 1 cut(s) 295
BstV1I GCAGC 1 cut(s) 60
BsuRI GGCC 3 cut(s) 272, 294, 300
BtsCI GGATG 1 cut(s) 161
BtsI GCAGTG 2 cut(s) 151, 228
BtsIMutI CAGTG 3 cut(s) 151, 228, 252
Cfr13I GGNCC 2 cut(s) 278, 293
CviAII CATG 1 cut(s) 190
CviJI RGCY 9 cut(s) 24, 52, 116, 176, 194, 255, 272, 294, 300
CviKI_1 RGCY 9 cut(s) 24, 52, 116, 176, 194, 255, 272, 294, 300
DdeI CTNAG 1 cut(s) 177
DpnI GATC 1 cut(s) 124
DpnII GATC 1 cut(s) 122
EaeI YGGCCR 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
EciI GGCGGA 1 cut(s) 168
Ecl136II GAGCTC 1 cut(s) 24
Eco24I GRGCYC 2 cut(s) 26, 118
Eco47I GGWCC 1 cut(s) 278
Eco53kI GAGCTC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 223
EcoICRI GAGCTC 1 cut(s) 24
EcoO109I RGGNCCY 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 295
EcoT38I GRGCYC 2 cut(s) 26, 118
FaeI CATG 1 cut(s) 193
FaiI YATR 1 cut(s) 191
FatI CATG 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 74, 142
FokI GGATG 1 cut(s) 168
FriOI GRGCYC 2 cut(s) 26, 118
Fsp4HI GCNGC 2 cut(s) 74, 142
FspBI CTAG 1 cut(s) 282
GluI GCNGC 2 cut(s) 74, 142
HaeIII GGCC 3 cut(s) 272, 294, 300
Hin1II CATG 1 cut(s) 193
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
Hpy166II GTNNAC 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 1 cut(s) 87
Hpy99I CGWCG 1 cut(s) 240
HpyAV CCTTC 2 cut(s) 128, 252
HpyCH4V TGCA 2 cut(s) 111, 159
HpyF10VI GCNNNNNNNGC 4 cut(s) 141, 150, 200, 291
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 1 cut(s) 193
Kzo9I GATC 1 cut(s) 122
LguI GCTCTTC 1 cut(s) 14
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 3 cut(s) 52, 261, 282
Lsp1109I GCAGC 1 cut(s) 60
LweI GCATC 2 cut(s) 41, 146
MaeI CTAG 1 cut(s) 282
MalI GATC 1 cut(s) 124
MboI GATC 1 cut(s) 122
MboII GAAGA 3 cut(s) 28, 31, 201
MhlI GDGCHC 3 cut(s) 26, 118, 230
MlsI TGGCCA 1 cut(s) 300
MluCI AATT 1 cut(s) 165
MluNI TGGCCA 1 cut(s) 300
MnlI CCTC 4 cut(s) 172, 175, 243, 283
Mox20I TGGCCA 1 cut(s) 300
MscI TGGCCA 1 cut(s) 300
Msp20I TGGCCA 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 297
MvaI CCWGG 1 cut(s) 297
MwoI GCNNNNNNNGC 4 cut(s) 141, 150, 200, 291
NdeII GATC 1 cut(s) 122
NlaIII CATG 1 cut(s) 193
PaeR7I CTCGAG 1 cut(s) 223
PciSI GCTCTTC 1 cut(s) 14
PkrI GCNGC 2 cut(s) 75, 143
Psp124BI GAGCTC 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 295
PspPI GGNCC 2 cut(s) 278, 293
PspXI VCTCGAGB 1 cut(s) 223
SacI GAGCTC 1 cut(s) 26
SapI GCTCTTC 1 cut(s) 14
SatI GCNGC 2 cut(s) 74, 142
Sau3AI GATC 1 cut(s) 122
Sau96I GGNCC 2 cut(s) 278, 293
ScrFI CCNGG 1 cut(s) 297
SduI GDGCHC 3 cut(s) 26, 118, 230
SetI ASST 5 cut(s) 26, 186, 200, 257, 283
SfaNI GCATC 2 cut(s) 41, 146
Sfr274I CTCGAG 1 cut(s) 223
SinI GGWCC 1 cut(s) 278
SlaI CTCGAG 1 cut(s) 223
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
Sse9I AATT 1 cut(s) 165
SsiI CCGC 2 cut(s) 141, 153
SspMI CTAG 1 cut(s) 282
SstI GAGCTC 1 cut(s) 26
StyD4I CCNGG 1 cut(s) 295
TaqI TCGA 2 cut(s) 121, 224
TaqII GACCGA 1 cut(s) 86
TasI AATT 1 cut(s) 165
TauI GCSGC 1 cut(s) 144
TscAI CASTG 3 cut(s) 151, 235, 252
TseI GCWGC 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 29
TspRI CASTG 3 cut(s) 151, 235, 252
VpaK11BI GGWCC 1 cut(s) 278
XhoI CTCGAG 1 cut(s) 223
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.