FvH4_2g33680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015049
Physical Location & Seq
Reverse (-)
25189653 .. 25190629
977 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g33680.t1

Sequence Viewer

Length: 291 bp
ATGTCAATGAAGAAGAACAGCTGCGTGTGGTTCGTGCTGGGGCTGGCGATACTGATCGTGTCGACTGAGTTTGTGCAAGTTGATTGCAGAGCGCTTCGATCCGACTCGACTGGCGAGGGATGCAAAGAGCAGGGTGATGGAGCTGAAGCGATGGCCGGAATGGGAAGCTTTGCGGTTTCGTCTAGCTTCAACTCATCGAGCAATGATAATAGTACTGATCATCGGCCTTCGTTGAGGAGCTTGATGTTTAGGTTGGCTTCTGGACCTAGCAAAAAGGGTCCTGGCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.16

Weight (kDa)

7.75

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47130 AT5G43064 AT5G43066 AT5G43068
fragaria_vesca FvH4_2g33680
prunus_persica Prupe.1G429100_v2.0.a1
pyrus_communis pycom08g07400 pycom15g07090
rosa_laevigata RLG00000010610
rosa_multiflora Rmu_sc0004046.1_g000013
rosa_roxburghii Rroxscaffold_7G00159830
rosa_rugosa Rorug06G0368900
rosa_samantha Rh6AG480400 Rh6CG495300 Rh6DG480700
rosa_wichuraiana Rw6G041870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 62
AciI CCGC 1 cut(s) 173
AclWI GGATC 1 cut(s) 93
AcoI YGGCCR 2 cut(s) 153, 283
AcuI CTGAAG 1 cut(s) 165
AfaI GTAC 1 cut(s) 214
AfeI AGCGCT 1 cut(s) 93
AgsI TTSAA 1 cut(s) 190
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 5 cut(s) 21, 143, 168, 186, 240
AluI AGCT 5 cut(s) 21, 143, 168, 186, 240
AlwI GGATC 1 cut(s) 93
Aor51HI AGCGCT 1 cut(s) 93
AoxI GGCC 3 cut(s) 153, 224, 283
ApeKI GCWGC 1 cut(s) 21
AspLEI GCGC 1 cut(s) 94
AspS9I GGNCC 2 cut(s) 263, 278
AsuHPI GGTGA 1 cut(s) 146
AvaII GGWCC 2 cut(s) 263, 278
BalI TGGCCA 1 cut(s) 285
BbvI GCAGC 1 cut(s) 8
BccI CCATC 2 cut(s) 131, 145
BciT130I CCWGG 1 cut(s) 282
BclI TGATCA 1 cut(s) 217
BfaI CTAG 2 cut(s) 183, 267
BfoI RGCGCY 1 cut(s) 95
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
BmcAI AGTACT 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 2 cut(s) 263, 278
BmgT120I GGNCC 2 cut(s) 263, 278
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 110
BsaBI GATNNNNATC 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 208
Bse8I GATNNNNATC 1 cut(s) 53
BseBI CCWGG 1 cut(s) 282
BseGI GGATG 1 cut(s) 125
BseJI GATNNNNATC 1 cut(s) 53
BseMI GCAATG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 250
BseXI GCAGC 1 cut(s) 8
BseYI CCCAGC 1 cut(s) 37
BshFI GGCC 3 cut(s) 155, 226, 285
BsiSI CCGG 1 cut(s) 156
BsnI GGCC 3 cut(s) 155, 226, 285
Bsp143I GATC 3 cut(s) 54, 98, 217
BspACI CCGC 1 cut(s) 173
BspANI GGCC 3 cut(s) 155, 226, 285
BspCNI CTCAG 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 279
BspPI GGATC 1 cut(s) 93
BsrDI GCAATG 1 cut(s) 208
BsrI ACTGG 1 cut(s) 115
BssMI GATC 3 cut(s) 54, 98, 217
Bst2UI CCWGG 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 125
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 3 cut(s) 57, 101, 220
BstMBI GATC 3 cut(s) 54, 98, 217
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 280
BstV1I GCAGC 1 cut(s) 8
BsuRI GGCC 3 cut(s) 155, 226, 285
BtgZI GCGATG 1 cut(s) 164
BtsCI GGATG 1 cut(s) 125
Cac8I GCNNGC 1 cut(s) 45
CfoI GCGC 1 cut(s) 94
Cfr13I GGNCC 2 cut(s) 263, 278
Csp6I GTAC 1 cut(s) 213
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 1 cut(s) 66
DpnI GATC 3 cut(s) 56, 100, 219
DpnII GATC 3 cut(s) 54, 98, 217
EaeI YGGCCR 2 cut(s) 153, 283
Eco47I GGWCC 2 cut(s) 263, 278
Eco47III AGCGCT 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 280
FbaI TGATCA 1 cut(s) 217
FblI GTMKAC 1 cut(s) 62
Fnu4HI GCNGC 1 cut(s) 22
FokI GGATG 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 22
FspBI CTAG 2 cut(s) 183, 267
GlaI GCGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 22
GsaI CCCAGC 1 cut(s) 41
HaeII RGCGCY 1 cut(s) 95
HaeIII GGCC 3 cut(s) 155, 226, 285
HapII CCGG 1 cut(s) 156
HhaI GCGC 1 cut(s) 94
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HindIII AAGCTT 1 cut(s) 166
HinfI GANTC 1 cut(s) 104
HpaII CCGG 1 cut(s) 156
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 261
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 1 cut(s) 237
HpyCH4V TGCA 3 cut(s) 76, 87, 123
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 1 cut(s) 66
HspAI GCGC 1 cut(s) 92
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 3 cut(s) 54, 98, 217
LmnI GCTCC 2 cut(s) 140, 237
LpnPI CCDG 7 cut(s) 23, 29, 96, 116, 169, 246, 267
Lsp1109I GCAGC 1 cut(s) 8
LweI GCATC 1 cut(s) 110
MaeI CTAG 2 cut(s) 183, 267
MalI GATC 3 cut(s) 56, 100, 219
MboI GATC 3 cut(s) 54, 98, 217
MboII GAAGA 2 cut(s) 22, 25
MlsI TGGCCA 1 cut(s) 285
MluNI TGGCCA 1 cut(s) 285
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 2 cut(s) 109, 228
Mox20I TGGCCA 1 cut(s) 285
MscI TGGCCA 1 cut(s) 285
Msp20I TGGCCA 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 21
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 120
NdeII GATC 3 cut(s) 54, 98, 217
NlaIV GGNNCC 1 cut(s) 279
PkrI GCNGC 1 cut(s) 23
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 278
Psp5II RGGWCCY 1 cut(s) 278
Psp6I CCWGG 1 cut(s) 280
PspFI CCCAGC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 2 cut(s) 263, 278
PspPPI RGGWCCY 1 cut(s) 278
PvuII CAGCTG 1 cut(s) 21
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SalI GTCGAC 1 cut(s) 61
SatI GCNGC 1 cut(s) 22
Sau3AI GATC 3 cut(s) 54, 98, 217
Sau96I GGNCC 2 cut(s) 263, 278
ScaI AGTACT 1 cut(s) 214
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 282
SetI ASST 7 cut(s) 23, 145, 170, 188, 242, 254, 268
SfaNI GCATC 1 cut(s) 110
SinI GGWCC 2 cut(s) 263, 278
SsiI CCGC 1 cut(s) 173
SspMI CTAG 2 cut(s) 183, 267
StyD4I CCNGG 1 cut(s) 280
TaqI TCGA 4 cut(s) 62, 97, 107, 197
TatI WGTACW 1 cut(s) 212
TseI GCWGC 1 cut(s) 21
TspDTI ATGAA 1 cut(s) 23
VpaK11BI GGWCC 2 cut(s) 263, 278
XmiI GTMKAC 1 cut(s) 62
XspI CTAG 2 cut(s) 183, 267
ZrmI AGTACT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.