Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004097

Physical Location & Seq

Genomic Coordinates Reverse (-)

17360287 .. 17363880

Gene Structure 3594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G43270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGAGTGTAATGCAAAGCCACCGTTTCAATGGGAATTGGAAAACTTGATATCTTTTGGCACTTCTACAGCTGAAGTTCCTAGAAAGCTAAAACCAATGGAGTGGGAAATTGATGGATTTGATTGCACCTCTCTGTATTCTTCAAGCTTTGCCTATGCTGGTAGTTCAGGTTCTGATATAGCTCATGCTTTCTCTAAAAGCTCAAAGTCAACTTCCATTAGCTCTTCATCAGCTGAAGTAAGAACACACAATTTTACATCCGAAACTGGTGAAAGTCTTCCTGGAGAATTTGCAAAGGGGATTGATACTTCTCCAAGTCTTGAACTTTCTTTTGGCTCTGGTGATCCGGTTCTCGGTTTAAAGCTTGGTAAACGAACGTACTTTGAAGACTTTTGGGAAGTGGAGAATGCTAAAGGTTTGGGACTTCCAGTGACTCTGGCTTCATCTTCTGTTTCTCCCGTGAAGAAATCGAAATCCATTCCTCAGAGGTTACAAACTCCTCACTGTCAAGTTGAAGGCTGTAATCTTGATCTTTCATCAGCTAAAGACTATCATCGGAAACATAGGATTTGTGAAAATCATTCAAAGTTTCCTAAAGTCGTTGTGAGTGGCGTAGAGCGTCGGTTCTGCCAACAATGTAGCAGGTTCCACTGTCTCTCTGAGTTTGATGAGAAGAAACGTAGCTGTCGCCGACGTCTCTCAGATCACAATGCAAGACGTCGCAAGCCAAATCCTGGAAGGACATATGATGGGAAACCACAGGTGGATTTTGTATGGAACAGATTTGCACTTATCCATCCAAGAAGTGAGGAAAAGTTTATATGGCCAAGTTCGAAGCACGTACCATCAAGAGTGTTAATGCCGCAACCTGCAAAGACTGAGATTTCCGATACCGAGCACAATAGATTTGGATTGTTGGACCCCAAAACCAAAACCGCAAGAGCCGAGTTATTCAGTAAAGAAAAGGTCACAATCTCTTCACACATGGGTGCTTCTCAAGATCTTGATGGTGCTCTCTCTCTTCTGTCAAATTCAACAACATGGGTTTCTTCCTCTGACCAACCAAGGCGTTTTACCCTTGATCACCATCCCTCAAGCAACCTCCAACCCGTAGCTCACCGGTCTGCGGCTCAACTCAATTCAGTTTCCGGCTATTGGCAGCCGGACCCACCCGCAGTTGAAGGCCCGACCGCTCTGCATAGAAATGGGGTAGGCCAGTTTAATGAAAACTACTTCAGCTTGAACCAGTTTTATAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0043565 GO:0044212 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048506 GO:0048509 GO:0048510 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

419

Amino Acids

46.86

Weight (kDa)

8.85

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	169 - 242	1.9e-31	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43270 AT5G43270 AT5G43270
fragaria_vesca	FvH4_4g23650 FvH4_4g23650 FvH4_4g23650 FvH4_4g23650 FvH4_4g23650
malus_domestica	MD13G1120300.v1.1 MD16G1120300.v1.1
prunus_persica	Prupe.1G224900_v2.0.a1 Prupe.1G224900_v2.0.a1 Prupe.1G224900_v2.0.a1 Prupe.1G224900_v2.0.a1 Prupe.1G224900_v2.0.a1 Prupe.1G224900_v2.0.a1
pyrus_communis	pycom13g10470 pycom16g10280
rosa_chinensis	RchiOBHm_Chr4g0430121
rosa_laevigata	RLG00000007002
rosa_multiflora	Rmu_co8521931.1_g000002 Rmu_ssc0000150.1_g000023
rosa_roxburghii	Rroxscaffold_5G00371930
rosa_rugosa	Rorug04G0240300 Rorug04G0240400 Rorug04G0240400 Rorug04G0240500 Rorug04G0240600
rosa_samantha	Rh4AG297400 Rh4BG303800 Rh4CG319400 Rh4DG301300
rosa_wichuraiana	Rw4G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1254
AatII	GACGTC	2 cut(s)	697, 721
Acc36I	ACCTGC	2 cut(s)	633, 877
AccB7I	CCANNNNNTGG	1 cut(s)	734
AccBSI	CCGCTC	1 cut(s)	1193
AciI	CCGC	5 cut(s)	863, 936, 1127, 1173, 1191
AclWI	GGATC	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	824
AcsI	RAATTY	2 cut(s)	287, 1030
AcuI	CTGAAG	3 cut(s)	93, 255, 1219
AcyI	GRCGYC	2 cut(s)	694, 718
AfaI	GTAC	2 cut(s)	380, 843
AfiI	CCNNNNNNNGG	4 cut(s)	353, 734, 1126, 1155
AgeI	ACCGGT	1 cut(s)	1119
AgsI	TTSAA	9 cut(s)	29, 144, 323, 386, 515, 585, 1035, 1181, 1243
AjnI	CCWGG	2 cut(s)	280, 733
AjuI	GAANNNNNNNTTGG	2 cut(s)	315, 347
AleI	CACNNNNGTG	1 cut(s)	987
Alw21I	GWGCWC	2 cut(s)	900, 1015
Alw26I	GTCTC	2 cut(s)	659, 701
AlwI	GGATC	1 cut(s)	338
AlwNI	CAGNNNCTG	1 cut(s)	173
AoxI	GGCC	3 cut(s)	824, 1183, 1213
ApeKI	GCWGC	1 cut(s)	1159
ApoI	RAATTY	2 cut(s)	287, 1030
AsiGI	ACCGGT	1 cut(s)	1119
Asp700I	GAANNNNTTC	1 cut(s)	276
AspS9I	GGNCC	3 cut(s)	919, 1165, 1184
AsuHPI	GGTGA	4 cut(s)	281, 353, 1076, 1109
AsuII	TTCGAA	1 cut(s)	833
AvaII	GGWCC	2 cut(s)	919, 1165
BalI	TGGCCA	1 cut(s)	826
BbsI	GAAGAC	2 cut(s)	269, 393
Bbv12I	GWGCWC	2 cut(s)	900, 1015
BbvI	GCAGC	1 cut(s)	1171
BccI	CCATC	6 cut(s)	107, 743, 804, 853, 1001, 1095
BcgI	CGANNNNNNTGC	2 cut(s)	1177, 1211
BciT130I	CCWGG	2 cut(s)	282, 735
BclI	TGATCA	1 cut(s)	1081
BcoDI	GTCTC	2 cut(s)	659, 701
BfaI	CTAG	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	66
BfuAI	ACCTGC	2 cut(s)	633, 877
BglII	AGATCT	1 cut(s)	1000
BisI	GCNGC	3 cut(s)	863, 1128, 1160
BlsI	GCNGC	3 cut(s)	864, 1129, 1161
Bme1390I	CCNGG	2 cut(s)	282, 735
Bme18I	GGWCC	2 cut(s)	919, 1165
BmgT120I	GGNCC	3 cut(s)	919, 1165, 1184
BmiI	GGNNCC	3 cut(s)	647, 921, 1167
BmrFI	CCNGG	2 cut(s)	282, 735
BpiI	GAAGAC	2 cut(s)	269, 393
BpmI	CTGGAG	1 cut(s)	303
Bpu14I	TTCGAA	1 cut(s)	833
BpuEI	CTTGAG	2 cut(s)	981, 1078
BsaAI	YACGTR	1 cut(s)	841
BsaBI	GATNNNNATC	1 cut(s)	1086
BsaHI	GRCGYC	2 cut(s)	694, 718
BsaJI	CCNNGG	1 cut(s)	1064
BsaWI	WCCGGW	2 cut(s)	346, 1119
Bsc4I	CCNNNNNNNGG	4 cut(s)	353, 734, 1126, 1155
Bse118I	RCCGGY	1 cut(s)	1119
Bse1I	ACTGG	4 cut(s)	271, 428, 1216, 1246
Bse8I	GATNNNNATC	1 cut(s)	1086
BseBI	CCWGG	2 cut(s)	282, 735
BseDI	CCNNGG	1 cut(s)	1064
BseGI	GGATG	3 cut(s)	257, 796, 1087
BseJI	GATNNNNATC	1 cut(s)	1086
BseLI	CCNNNNNNNGG	4 cut(s)	353, 734, 1126, 1155
BseMII	CTCAG	4 cut(s)	497, 651, 714, 870
BseNI	ACTGG	4 cut(s)	271, 428, 1216, 1246
BseRI	GAGGAG	1 cut(s)	489
BseXI	GCAGC	1 cut(s)	1171
Bsh1285I	CGRYCG	1 cut(s)	1191
BshFI	GGCC	3 cut(s)	826, 1185, 1215
BshTI	ACCGGT	1 cut(s)	1119
BsiEI	CGRYCG	1 cut(s)	1191
BsiHKAI	GWGCWC	2 cut(s)	900, 1015
BsiSI	CCGG	4 cut(s)	347, 1120, 1149, 1163
BslFI	GGGAC	1 cut(s)	435
BslI	CCNNNNNNNGG	4 cut(s)	353, 734, 1126, 1155
BsmAI	GTCTC	2 cut(s)	659, 701
BsmBI	CGTCTC	1 cut(s)	701
BsmFI	GGGAC	1 cut(s)	435
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	3 cut(s)	826, 1185, 1215
Bsp119I	TTCGAA	1 cut(s)	833
Bsp1286I	GDGCHC	2 cut(s)	900, 1015
Bsp143I	GATC	5 cut(s)	343, 529, 703, 1000, 1081
BspACI	CCGC	5 cut(s)	863, 936, 1127, 1173, 1191
BspANI	GGCC	3 cut(s)	826, 1185, 1215
BspCNI	CTCAG	4 cut(s)	496, 652, 713, 871
BspLI	GGNNCC	3 cut(s)	647, 921, 1167
BspMI	ACCTGC	2 cut(s)	633, 877
BspPI	GGATC	1 cut(s)	338
BspQI	GCTCTTC	1 cut(s)	229
BspT104I	TTCGAA	1 cut(s)	833
BsrBI	CCGCTC	1 cut(s)	1193
BsrFI	RCCGGY	1 cut(s)	1119
BsrI	ACTGG	4 cut(s)	271, 428, 1216, 1246
BssAI	RCCGGY	1 cut(s)	1119
BssECI	CCNNGG	1 cut(s)	1064
BssMI	GATC	5 cut(s)	343, 529, 703, 1000, 1081
BssNI	GRCGYC	2 cut(s)	694, 718
BssT1I	CCWWGG	1 cut(s)	1064
Bst2UI	CCWGG	2 cut(s)	282, 735
Bst4CI	ACNGT	3 cut(s)	24, 506, 653
Bst6I	CTCTTC	3 cut(s)	229, 982, 1026
BstACI	GRCGYC	2 cut(s)	694, 718
BstBAI	YACGTR	1 cut(s)	841
BstBI	TTCGAA	1 cut(s)	833
BstC8I	GCNNGC	1 cut(s)	725
BstDEI	CTNAG	4 cut(s)	483, 660, 700, 879
BstF5I	GGATG	3 cut(s)	257, 796, 1087
BstKTI	GATC	5 cut(s)	346, 532, 706, 1003, 1084
BstMAI	GTCTC	2 cut(s)	659, 701
BstMBI	GATC	5 cut(s)	343, 529, 703, 1000, 1081
BstMCI	CGRYCG	1 cut(s)	1191
BstNI	CCWGG	2 cut(s)	282, 735
BstSCI	CCNGG	2 cut(s)	280, 733
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	1171
BstV2I	GAAGAC	2 cut(s)	269, 393
BstX2I	RGATCY	1 cut(s)	1000
BstXI	CCANNNNNNTGG	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	1000
BsuRI	GGCC	3 cut(s)	826, 1185, 1215
BtsCI	GGATG	3 cut(s)	257, 796, 1087
BtsIMutI	CAGTG	3 cut(s)	435, 502, 649
BveI	ACCTGC	2 cut(s)	633, 877
Cac8I	GCNNGC	1 cut(s)	725
CaiI	CAGNNNCTG	1 cut(s)	173
Cfr10I	RCCGGY	1 cut(s)	1119
Cfr13I	GGNCC	3 cut(s)	919, 1165, 1184
CseI	GACGC	1 cut(s)	608
Csp6I	GTAC	2 cut(s)	379, 842
CspAI	ACCGGT	1 cut(s)	1119
CviAII	CATG	3 cut(s)	185, 985, 1041
CviQI	GTAC	2 cut(s)	379, 842
DdeI	CTNAG	4 cut(s)	483, 660, 700, 879
DpnI	GATC	5 cut(s)	345, 531, 705, 1002, 1083
DpnII	GATC	5 cut(s)	343, 529, 703, 1000, 1081
DraI	TTTAAA	1 cut(s)	360
EaeI	YGGCCR	1 cut(s)	824
Eam1104I	CTCTTC	3 cut(s)	229, 982, 1026
EarI	CTCTTC	3 cut(s)	229, 982, 1026
Eco130I	CCWWGG	1 cut(s)	1064
Eco32I	GATATC	1 cut(s)	51
Eco47I	GGWCC	2 cut(s)	919, 1165
Eco57I	CTGAAG	3 cut(s)	93, 255, 1219
EcoRII	CCWGG	2 cut(s)	280, 733
EcoRV	GATATC	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	1064
ErhI	CCWWGG	1 cut(s)	1064
Esp3I	CGTCTC	1 cut(s)	701
FaeI	CATG	3 cut(s)	188, 988, 1044
FaqI	GGGAC	1 cut(s)	435
FatI	CATG	3 cut(s)	184, 984, 1040
FauI	CCCGC	1 cut(s)	1180
FauNDI	CATATG	1 cut(s)	745
FbaI	TGATCA	1 cut(s)	1081
Fnu4HI	GCNGC	3 cut(s)	863, 1128, 1160
FokI	GGATG	3 cut(s)	244, 783, 1074
Fsp4HI	GCNGC	3 cut(s)	863, 1128, 1160
FspBI	CTAG	1 cut(s)	81
GluI	GCNGC	3 cut(s)	863, 1128, 1160
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	3 cut(s)	826, 1185, 1215
HapII	CCGG	4 cut(s)	347, 1120, 1149, 1163
HgaI	GACGC	1 cut(s)	608
Hin1I	GRCGYC	2 cut(s)	694, 718
Hin1II	CATG	3 cut(s)	188, 988, 1044
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HindIII	AAGCTT	2 cut(s)	145, 362
HinfI	GANTC	1 cut(s)	433
HpaII	CCGG	4 cut(s)	347, 1120, 1149, 1163
HphI	GGTGA	4 cut(s)	281, 353, 1076, 1109
Hpy166II	GTNNAC	2 cut(s)	210, 371
Hpy188I	TCNGA	8 cut(s)	175, 262, 486, 558, 661, 703, 889, 1057
Hpy188III	TCNNGA	5 cut(s)	320, 527, 849, 998, 1004
Hpy8I	GTNNAC	2 cut(s)	210, 371
Hpy99I	CGWCG	3 cut(s)	624, 696, 723
HpyAV	CCTTC	3 cut(s)	509, 732, 1175
HpyCH4III	ACNGT	3 cut(s)	24, 506, 653
HpyCH4IV	ACGT	5 cut(s)	377, 679, 694, 718, 840
HpyCH4V	TGCA	7 cut(s)	14, 126, 293, 713, 788, 872, 1198
HpyF3I	CTNAG	4 cut(s)	483, 660, 700, 879
HpySE526I	ACGT	5 cut(s)	377, 679, 694, 718, 840
Hsp92I	GRCGYC	2 cut(s)	694, 718
Hsp92II	CATG	3 cut(s)	188, 988, 1044
Ksp22I	TGATCA	1 cut(s)	1081
Kzo9I	GATC	5 cut(s)	343, 529, 703, 1000, 1081
LguI	GCTCTTC	1 cut(s)	229
Lsp1109I	GCAGC	1 cut(s)	1171
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	5 cut(s)	377, 679, 694, 718, 840
MaeIII	GTNAC	3 cut(s)	430, 489, 967
MalI	GATC	5 cut(s)	345, 531, 705, 1002, 1083
MbiI	CCGCTC	1 cut(s)	1193
MboI	GATC	5 cut(s)	343, 529, 703, 1000, 1081
MflI	RGATCY	1 cut(s)	1000
MhlI	GDGCHC	2 cut(s)	900, 1015
MlsI	TGGCCA	1 cut(s)	826
MluCI	AATT	6 cut(s)	35, 108, 250, 287, 1030, 1138
MluNI	TGGCCA	1 cut(s)	826
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	2 cut(s)	897, 1129
MnlI	CCTC	8 cut(s)	139, 480, 492, 510, 802, 1063, 1102, 1112
Mox20I	TGGCCA	1 cut(s)	826
MroXI	GAANNNNTTC	1 cut(s)	276
MscI	TGGCCA	1 cut(s)	826
MseI	TTAA	3 cut(s)	359, 857, 1221
MslI	CAYNNNNRTG	2 cut(s)	987, 1203
Msp20I	TGGCCA	1 cut(s)	826
MspA1I	CMGCKG	2 cut(s)	71, 233
MspI	CCGG	4 cut(s)	347, 1120, 1149, 1163
MspR9I	CCNGG	2 cut(s)	282, 735
Mva1269I	GAATGC	1 cut(s)	412
MvaI	CCWGG	2 cut(s)	282, 735
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	5 cut(s)	343, 529, 703, 1000, 1081
NlaIII	CATG	3 cut(s)	188, 988, 1044
NlaIV	GGNNCC	3 cut(s)	647, 921, 1167
NmeAIII	GCCGAG	1 cut(s)	970
NmuCI	GTSAC	2 cut(s)	430, 967
NspV	TTCGAA	1 cut(s)	833
OliI	CACNNNNGTG	1 cut(s)	987
PciSI	GCTCTTC	1 cut(s)	229
PctI	GAATGC	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	276
PflMI	CCANNNNNTGG	1 cut(s)	734
PfoI	TCCNGGA	2 cut(s)	280, 733
PinAI	ACCGGT	1 cut(s)	1119
PkrI	GCNGC	3 cut(s)	864, 1129, 1161
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
Ppu21I	YACGTR	1 cut(s)	841
PsiI	TTATAA	1 cut(s)	1254
Psp6I	CCWGG	2 cut(s)	280, 733
PspGI	CCWGG	2 cut(s)	280, 733
PspN4I	GGNNCC	3 cut(s)	647, 921, 1167
PspPI	GGNCC	3 cut(s)	919, 1165, 1184
PsrI	GAACNNNNNNTAC	2 cut(s)	154, 186
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	1000
PvuII	CAGCTG	2 cut(s)	71, 233
RsaI	GTAC	2 cut(s)	380, 843
RsaNI	GTAC	2 cut(s)	379, 842
RseI	CAYNNNNRTG	2 cut(s)	987, 1203
SapI	GCTCTTC	1 cut(s)	229
SaqAI	TTAA	3 cut(s)	359, 857, 1221
SatI	GCNGC	3 cut(s)	863, 1128, 1160
Sau3AI	GATC	5 cut(s)	343, 529, 703, 1000, 1081
Sau96I	GGNCC	3 cut(s)	919, 1165, 1184
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	2 cut(s)	282, 735
SduI	GDGCHC	2 cut(s)	900, 1015
SfcI	CTRYAG	1 cut(s)	66
SfuI	TTCGAA	1 cut(s)	833
SinI	GGWCC	2 cut(s)	919, 1165
SmiMI	CAYNNNNRTG	2 cut(s)	987, 1203
SmlI	CTYRAG	2 cut(s)	996, 1093
SmoI	CTYRAG	2 cut(s)	996, 1093
Sse9I	AATT	6 cut(s)	35, 108, 250, 287, 1030, 1138
SsiI	CCGC	5 cut(s)	863, 936, 1127, 1173, 1191
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	280, 733
StyI	CCWWGG	1 cut(s)	1064
TaaI	ACNGT	3 cut(s)	24, 506, 653
TaiI	ACGT	5 cut(s)	380, 682, 697, 721, 843
TaqI	TCGA	2 cut(s)	470, 833
TasI	AATT	6 cut(s)	35, 108, 250, 287, 1030, 1138
TauI	GCSGC	2 cut(s)	865, 1130
Tru1I	TTAA	3 cut(s)	359, 857, 1221
Tru9I	TTAA	3 cut(s)	359, 857, 1221
TscAI	CASTG	3 cut(s)	435, 509, 656
TseFI	GTSAC	2 cut(s)	430, 967
TseI	GCWGC	1 cut(s)	1159
Tsp45I	GTSAC	2 cut(s)	430, 967
TspDTI	ATGAA	4 cut(s)	216, 432, 525, 1239
TspRI	CASTG	3 cut(s)	435, 509, 656
Van91I	CCANNNNNTGG	1 cut(s)	734
VpaK11BI	GGWCC	2 cut(s)	919, 1165
XapI	RAATTY	2 cut(s)	287, 1030
XcmI	CCANNNNNNNNNTGG	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	1 cut(s)	81
ZraI	GACGTC	2 cut(s)	695, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.