Prupe.1G224900_v2.0.a1

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
23865004 .. 23871249
6246 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G224900.1

Sequence Viewer

Length: 1446 bp
ATGAATTCTGTGTTGCTGATGGAGTGGAATGAAAAACCTCCTTCACTATGGGATTTGGAGAACCTTTTCATGTTTGGTGCAAAAGTAACTGACAATCCAAAGAAGTTACAACCAGCAGACTGGGGTATTGAAGGGGAACGAGGAATGAACTCTGAATCTTTCTATTCAACTGGGGGTGATGGGGGCAGTGGTGTTTCTGGCTCTGATTTAGGAGATGGCTCATCAAAAAGTTCAAAATCAGCTTCCGTCAGTTCTTCAGTTGGGGAAAGTAAGAAACCCAATTTCAACCTTGACGCTTTTGAAGGTTTCCCGAATGATTTCATTCATAAAAATGAATCAGCTAAAGCTGAGGCCCTTGGATCTTCTCCAACTCATGAGGTTTCAGCTGGGTCGGGTGAGCCACTGCTCAGTCTAAAGCTTGGTAAGCGGATGTACTTTGAAGATGTTTGTGCAGGAAATAATCCTAAATCCTCTTCCCTTTCTGTTATTTCCTCGTCAATGGCAAAGACAAAGAGGAGTAAGTCCACTGGTCAGAGTGCATTTGCACCACACTGCCAAGTTGAAGGCTGCAATATTGATCTGTCATCAGCCAAAGATTACCACCGTAAACATAGGATTTGTGCTAATCATTCCAAATCTCCGAAGGTCATTGTAGAAGGGGTGGAACGTCGGTTTTGCCAGCAGTGTAGCAGGTTCCATGGCCTTTCTGAATTTGATGAAAAGAAGCGAAGCTGTCGCAGGCGACTTTCTGATCACAATGCAAGGCGCCGCAAGCCACAGACAGAAGCACTGAGAAATCCAACAAGGCTGTCCTCATCACTGTTCAGTACAGATGAGAGGCAACAGATGAGCCTTGTTTTGGACCAAGCCCCAAGTGTTTACACAAGGCATCCCTCAAATTTAACATGGGATGGCACCTGCAGCTTCAAGTTCGGACAAACGAAAGAATATTTTCCAAAGCCTGCAAAAGGAGGGGGCACTGGCGGGCAGCTGAATTTGGCCAACAATGGAATTCCAAGTTCAATAACAATGCTGTATCATGATTCTAGTGGGCTGTCACCTTCGAAGGGCACTGCCGCTGAGGTTCTCAACCGAGGTGCTGAAGAATCTATGATCTCTTTCAACCTAGGTGCGACACAGGATTTTCATCGTGCTCTCTCTCTTCTGTCAACAAGTTCTTGGGTTTCAGGCGAGGCAAAACCTGTTGCACTTGATAATAATACCAACCAAAATTATCAGAACAACATCCCTCAACCTGGGATGCAAGCAATGACCCAAGGTTTGCCGGTCTCATCAGGGTACTGGCAAACTCAACATCTATCCCTTAATACCCAAGAAGCACATGTCTCCCACTCACACAGTAATGGCAGCAACCACTTCCATCAGGATCTTCATCAGTTCAAAGGCCCCTATGAGTTTGGTTCTCAAACCAACCAATTCAATTAA

Protein Analysis

482

Amino Acids

52.54

Weight (kDa)

8.49

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 926
Acc36I ACCTGC 2 cut(s) 681, 926
AccB1I GGYRCC 2 cut(s) 765, 914
AciI CCGC 4 cut(s) 427, 769, 984, 1077
AclWI GGATC 2 cut(s) 367, 1395
AcoI YGGCCR 1 cut(s) 999
AcsI RAATTY 5 cut(s) 4, 710, 898, 994, 1011
AcuI CTGAAG 2 cut(s) 240, 1122
AcyI GRCGYC 1 cut(s) 766
AfaI GTAC 3 cut(s) 434, 829, 1301
AfiI CCNNNNNNNGG 4 cut(s) 859, 968, 1067, 1256
AflIII ACRYGT 1 cut(s) 1342
AjnI CCWGG 1 cut(s) 1255
AluBI AGCT 8 cut(s) 242, 341, 347, 386, 418, 732, 924, 991
AluI AGCT 8 cut(s) 242, 341, 347, 386, 418, 732, 924, 991
Alw21I GWGCWC 1 cut(s) 1156
Alw26I GTCTC 2 cut(s) 1294, 1351
AlwI GGATC 2 cut(s) 367, 1395
AoxI GGCC 4 cut(s) 351, 700, 999, 1405
ApeKI GCWGC 4 cut(s) 567, 921, 988, 1368
ApoI RAATTY 5 cut(s) 4, 710, 898, 994, 1011
ArsI GACNNNNNNTTYG 2 cut(s) 1264, 1296
Asp700I GAANNNNTTC 3 cut(s) 65, 317, 951
AspA2I CCTAGG 1 cut(s) 1126
AspLEI GCGC 1 cut(s) 768
AspS9I GGNCC 3 cut(s) 352, 862, 1406
AsuHPI GGTGA 3 cut(s) 188, 407, 1050
AsuII TTCGAA 1 cut(s) 1064
AvaII GGWCC 1 cut(s) 862
AvrII CCTAGG 1 cut(s) 1126
BaeGI GKGCMC 2 cut(s) 980, 1073
BalI TGGCCA 1 cut(s) 1001
BanI GGYRCC 2 cut(s) 765, 914
Bbv12I GWGCWC 1 cut(s) 1156
BbvCI CCTCAGC 2 cut(s) 348, 1080
BbvI GCAGC 4 cut(s) 554, 933, 1000, 1380
BccI CCATC 5 cut(s) 13, 173, 209, 905, 1389
BciT130I CCWGG 1 cut(s) 1257
BclI TGATCA 1 cut(s) 751
BcoDI GTCTC 2 cut(s) 1294, 1351
BfaI CTAG 2 cut(s) 1047, 1127
BfmI CTRYAG 1 cut(s) 919
BfoI RGCGCY 1 cut(s) 769
BfuAI ACCTGC 2 cut(s) 681, 926
BisI GCNGC 6 cut(s) 568, 769, 922, 989, 1077, 1369
BlnI CCTAGG 1 cut(s) 1126
BlsI GCNGC 6 cut(s) 569, 770, 923, 990, 1078, 1370
Bme1390I CCNGG 1 cut(s) 1257
Bme18I GGWCC 1 cut(s) 862
BmgT120I GGNCC 3 cut(s) 352, 862, 1406
BmiI GGNNCC 4 cut(s) 695, 767, 916, 1408
BmrFI CCNGG 1 cut(s) 1257
BmrI ACTGGG 2 cut(s) 130, 180
BmsI GCATC 2 cut(s) 898, 1251
BmuI ACTGGG 2 cut(s) 130, 180
Bpu10I CCTNAGC 2 cut(s) 348, 1080
Bpu14I TTCGAA 1 cut(s) 1064
BsaBI GATNNNNATC 2 cut(s) 1146, 1392
BsaHI GRCGYC 1 cut(s) 766
BsaI GGTCTC 1 cut(s) 1294
BsaJI CCNNGG 6 cut(s) 355, 697, 1093, 1126, 1256, 1276
Bsc4I CCNNNNNNNGG 4 cut(s) 859, 968, 1067, 1256
Bse118I RCCGGY 1 cut(s) 1285
Bse1I ACTGG 5 cut(s) 125, 175, 532, 985, 1307
Bse3DI GCAATG 1 cut(s) 1275
Bse8I GATNNNNATC 2 cut(s) 1146, 1392
BseBI CCWGG 1 cut(s) 1257
BseDI CCNNGG 6 cut(s) 355, 697, 1093, 1126, 1256, 1276
BseGI GGATG 5 cut(s) 435, 889, 916, 1245, 1266
BseJI GATNNNNATC 2 cut(s) 1146, 1392
BseLI CCNNNNNNNGG 4 cut(s) 859, 968, 1067, 1256
BseMI GCAATG 1 cut(s) 1275
BseMII CTCAG 4 cut(s) 339, 421, 782, 1071
BseNI ACTGG 5 cut(s) 125, 175, 532, 985, 1307
BseRI GAGGAG 1 cut(s) 529
BseSI GKGCMC 2 cut(s) 980, 1073
BseXI GCAGC 4 cut(s) 554, 933, 1000, 1380
BseYI CCCAGC 1 cut(s) 386
BsgI GTGCAG 1 cut(s) 471
BshFI GGCC 4 cut(s) 353, 702, 1001, 1407
BshNI GGYRCC 2 cut(s) 765, 914
BsiHKAI GWGCWC 1 cut(s) 1156
BsiSI CCGG 1 cut(s) 1286
BslI CCNNNNNNNGG 4 cut(s) 859, 968, 1067, 1256
BsmAI GTCTC 2 cut(s) 1294, 1351
BsnI GGCC 4 cut(s) 353, 702, 1001, 1407
Bso31I GGTCTC 1 cut(s) 1294
Bsp119I TTCGAA 1 cut(s) 1064
Bsp1286I GDGCHC 3 cut(s) 980, 1073, 1156
Bsp143I GATC 5 cut(s) 359, 577, 751, 1113, 1387
Bsp19I CCATGG 1 cut(s) 697
BspACI CCGC 4 cut(s) 427, 769, 984, 1077
BspANI GGCC 4 cut(s) 353, 702, 1001, 1407
BspCNI CTCAG 4 cut(s) 340, 420, 783, 1072
BspHI TCATGA 2 cut(s) 373, 1039
BspLI GGNNCC 4 cut(s) 695, 767, 916, 1408
BspMAI CTGCAG 1 cut(s) 923
BspMI ACCTGC 2 cut(s) 681, 926
BspPI GGATC 2 cut(s) 367, 1395
BspT104I TTCGAA 1 cut(s) 1064
BspT107I GGYRCC 2 cut(s) 765, 914
BspTNI GGTCTC 1 cut(s) 1294
BsrDI GCAATG 1 cut(s) 1275
BsrFI RCCGGY 1 cut(s) 1285
BsrI ACTGG 5 cut(s) 125, 175, 532, 985, 1307
BssAI RCCGGY 1 cut(s) 1285
BssECI CCNNGG 6 cut(s) 355, 697, 1093, 1126, 1256, 1276
BssMI GATC 5 cut(s) 359, 577, 751, 1113, 1387
BssNI GRCGYC 1 cut(s) 766
BssT1I CCWWGG 4 cut(s) 355, 697, 1126, 1276
Bst2UI CCWGG 1 cut(s) 1257
Bst4CI ACNGT 3 cut(s) 605, 822, 1361
Bst6I CTCTTC 2 cut(s) 478, 1167
BstACI GRCGYC 1 cut(s) 766
BstBI TTCGAA 1 cut(s) 1064
BstC8I GCNNGC 6 cut(s) 680, 740, 773, 963, 986, 1266
BstDEI CTNAG 4 cut(s) 348, 407, 791, 1080
BstDSI CCRYGG 1 cut(s) 697
BstENI CCTNNNNNAGG 1 cut(s) 966
BstF5I GGATG 5 cut(s) 435, 889, 916, 1245, 1266
BstH2I RGCGCY 1 cut(s) 769
BstHHI GCGC 1 cut(s) 768
BstKTI GATC 5 cut(s) 362, 580, 754, 1116, 1390
BstMAI GTCTC 2 cut(s) 1294, 1351
BstMBI GATC 5 cut(s) 359, 577, 751, 1113, 1387
BstMWI GCNNNNNNNGC 3 cut(s) 424, 772, 921
BstNI CCWGG 1 cut(s) 1257
BstNSI RCATGY 1 cut(s) 1346
BstSCI CCNGG 1 cut(s) 1255
BstSFI CTRYAG 1 cut(s) 919
BstSLI GKGCMC 2 cut(s) 980, 1073
BstV1I GCAGC 4 cut(s) 554, 933, 1000, 1380
BstX2I RGATCY 2 cut(s) 359, 1387
BstXI CCANNNNNNTGG 1 cut(s) 120
BstYI RGATCY 2 cut(s) 359, 1387
BsuRI GGCC 4 cut(s) 353, 702, 1001, 1407
BtgI CCRYGG 1 cut(s) 697
BtsCI GGATG 5 cut(s) 435, 889, 916, 1245, 1266
BtsI GCAGTG 5 cut(s) 193, 401, 550, 689, 1071
BtsIMutI CAGTG 9 cut(s) 193, 401, 525, 550, 689, 788, 818, 978, 1071
BveI ACCTGC 2 cut(s) 681, 926
Cac8I GCNNGC 6 cut(s) 680, 740, 773, 963, 986, 1266
CciI TCATGA 2 cut(s) 373, 1039
CfoI GCGC 1 cut(s) 768
Cfr10I RCCGGY 1 cut(s) 1285
Cfr13I GGNCC 3 cut(s) 352, 862, 1406
CseI GACGC 1 cut(s) 302
Csp6I GTAC 3 cut(s) 433, 828, 1300
CviAII CATG 6 cut(s) 70, 374, 698, 906, 1040, 1343
CviQI GTAC 3 cut(s) 433, 828, 1300
DdeI CTNAG 4 cut(s) 348, 407, 791, 1080
DinI GGCGCC 1 cut(s) 767
DpnI GATC 5 cut(s) 361, 579, 753, 1115, 1389
DpnII GATC 5 cut(s) 359, 577, 751, 1113, 1387
EaeI YGGCCR 1 cut(s) 999
Eam1104I CTCTTC 2 cut(s) 478, 1167
EarI CTCTTC 2 cut(s) 478, 1167
Eco130I CCWWGG 4 cut(s) 355, 697, 1126, 1276
Eco31I GGTCTC 1 cut(s) 1294
Eco47I GGWCC 1 cut(s) 862
Eco57I CTGAAG 2 cut(s) 240, 1122
EcoNI CCTNNNNNAGG 1 cut(s) 966
EcoO109I RGGNCCY 2 cut(s) 352, 1406
EcoRI GAATTC 2 cut(s) 4, 1011
EcoRII CCWGG 1 cut(s) 1255
EcoT14I CCWWGG 4 cut(s) 355, 697, 1126, 1276
EgeI GGCGCC 1 cut(s) 767
EheI GGCGCC 1 cut(s) 767
ErhI CCWWGG 4 cut(s) 355, 697, 1126, 1276
FaeI CATG 6 cut(s) 73, 377, 701, 909, 1043, 1346
FatI CATG 6 cut(s) 69, 373, 697, 905, 1039, 1342
FauI CCCGC 1 cut(s) 977
FbaI TGATCA 1 cut(s) 751
Fnu4HI GCNGC 6 cut(s) 568, 769, 922, 989, 1077, 1369
FokI GGATG 5 cut(s) 442, 876, 923, 1232, 1273
Fsp4HI GCNGC 6 cut(s) 568, 769, 922, 989, 1077, 1369
FspBI CTAG 2 cut(s) 1047, 1127
GlaI GCGC 1 cut(s) 767
GluI GCNGC 6 cut(s) 568, 769, 922, 989, 1077, 1369
GsaI CCCAGC 1 cut(s) 390
HaeII RGCGCY 1 cut(s) 769
HaeIII GGCC 4 cut(s) 353, 702, 1001, 1407
HapII CCGG 1 cut(s) 1286
HgaI GACGC 1 cut(s) 302
HhaI GCGC 1 cut(s) 768
Hin1I GRCGYC 1 cut(s) 766
Hin1II CATG 6 cut(s) 73, 377, 701, 909, 1043, 1346
Hin6I GCGC 1 cut(s) 766
HinP1I GCGC 1 cut(s) 766
HincII GTYRAC 1 cut(s) 1170
HindII GTYRAC 1 cut(s) 1170
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 4 cut(s) 155, 335, 1043, 1106
HpaII CCGG 1 cut(s) 1286
HphI GGTGA 3 cut(s) 188, 407, 1050
Hpy166II GTNNAC 4 cut(s) 525, 608, 880, 1170
Hpy188I TCNGA 8 cut(s) 154, 205, 534, 642, 709, 751, 935, 1239
Hpy188III TCNNGA 4 cut(s) 310, 374, 1040, 1385
Hpy8I GTNNAC 4 cut(s) 525, 608, 880, 1170
Hpy99I CGWCG 1 cut(s) 672
HpyAV CCTTC 8 cut(s) 51, 125, 296, 557, 637, 650, 1060, 1071
HpyCH4III ACNGT 3 cut(s) 605, 822, 1361
HpyCH4IV ACGT 1 cut(s) 667
HpyF10VI GCNNNNNNNGC 3 cut(s) 424, 772, 921
HpyF3I CTNAG 4 cut(s) 348, 407, 791, 1080
HpySE526I ACGT 1 cut(s) 667
Hsp92I GRCGYC 1 cut(s) 766
Hsp92II CATG 6 cut(s) 73, 377, 701, 909, 1043, 1346
HspAI GCGC 1 cut(s) 766
KasI GGCGCC 1 cut(s) 765
Ksp22I TGATCA 1 cut(s) 751
Kzo9I GATC 5 cut(s) 359, 577, 751, 1113, 1387
Lsp1109I GCAGC 4 cut(s) 554, 933, 1000, 1380
LweI GCATC 2 cut(s) 898, 1251
MaeI CTAG 2 cut(s) 1047, 1127
MaeII ACGT 1 cut(s) 667
MaeIII GTNAC 3 cut(s) 85, 105, 1056
MalI GATC 5 cut(s) 361, 579, 753, 1115, 1389
MboI GATC 5 cut(s) 359, 577, 751, 1113, 1387
MboII GAAGA 7 cut(s) 246, 354, 452, 465, 1115, 1154, 1382
MflI RGATCY 2 cut(s) 359, 1387
MhlI GDGCHC 3 cut(s) 980, 1073, 1156
MlsI TGGCCA 1 cut(s) 1001
MluCI AATT 9 cut(s) 4, 280, 710, 898, 994, 1011, 1231, 1436, 1441
MluNI TGGCCA 1 cut(s) 1001
Mly113I GGCGCC 1 cut(s) 766
MmeI TCCRAC 2 cut(s) 392, 824
Mox20I TGGCCA 1 cut(s) 1001
MroXI GAANNNNTTC 3 cut(s) 65, 317, 951
MscI TGGCCA 1 cut(s) 1001
MseI TTAA 3 cut(s) 902, 1326, 1444
MslI CAYNNNNRTG 2 cut(s) 330, 1362
Msp20I TGGCCA 1 cut(s) 1001
MspA1I CMGCKG 3 cut(s) 386, 991, 1079
MspI CCGG 1 cut(s) 1286
MspR9I CCNGG 1 cut(s) 1257
MvaI CCWGG 1 cut(s) 1257
MwoI GCNNNNNNNGC 3 cut(s) 424, 772, 921
NarI GGCGCC 1 cut(s) 766
NcoI CCATGG 1 cut(s) 697
NdeII GATC 5 cut(s) 359, 577, 751, 1113, 1387
NlaIII CATG 6 cut(s) 73, 377, 701, 909, 1043, 1346
NlaIV GGNNCC 4 cut(s) 695, 767, 916, 1408
NmuCI GTSAC 1 cut(s) 1056
NspI RCATGY 1 cut(s) 1346
NspV TTCGAA 1 cut(s) 1064
PagI TCATGA 2 cut(s) 373, 1039
PaqCI CACCTGC 1 cut(s) 926
PciI ACATGT 1 cut(s) 1342
PdmI GAANNNNTTC 3 cut(s) 65, 317, 951
PfeI GAWTC 4 cut(s) 155, 335, 1043, 1106
PkrI GCNGC 6 cut(s) 569, 770, 923, 990, 1078, 1370
PluTI GGCGCC 1 cut(s) 769
PscI ACATGT 1 cut(s) 1342
Psp6I CCWGG 1 cut(s) 1255
PspFI CCCAGC 1 cut(s) 386
PspGI CCWGG 1 cut(s) 1255
PspN4I GGNNCC 4 cut(s) 695, 767, 916, 1408
PspPI GGNCC 3 cut(s) 352, 862, 1406
PstI CTGCAG 1 cut(s) 923
PsuI RGATCY 2 cut(s) 359, 1387
PvuII CAGCTG 2 cut(s) 386, 991
RsaI GTAC 3 cut(s) 434, 829, 1301
RsaNI GTAC 3 cut(s) 433, 828, 1300
RseI CAYNNNNRTG 2 cut(s) 330, 1362
SaqAI TTAA 3 cut(s) 902, 1326, 1444
SatI GCNGC 6 cut(s) 568, 769, 922, 989, 1077, 1369
Sau3AI GATC 5 cut(s) 359, 577, 751, 1113, 1387
Sau96I GGNCC 3 cut(s) 352, 862, 1406
ScrFI CCNGG 1 cut(s) 1257
SduI GDGCHC 3 cut(s) 980, 1073, 1156
SfaNI GCATC 2 cut(s) 898, 1251
SfcI CTRYAG 1 cut(s) 919
SfoI GGCGCC 1 cut(s) 767
SfuI TTCGAA 1 cut(s) 1064
SinI GGWCC 1 cut(s) 862
SmiMI CAYNNNNRTG 2 cut(s) 330, 1362
Sse9I AATT 9 cut(s) 4, 280, 710, 898, 994, 1011, 1231, 1436, 1441
SsiI CCGC 4 cut(s) 427, 769, 984, 1077
SspDI GGCGCC 1 cut(s) 765
SspI AATATT 2 cut(s) 574, 950
SspMI CTAG 2 cut(s) 1047, 1127
StyD4I CCNGG 1 cut(s) 1255
StyI CCWWGG 4 cut(s) 355, 697, 1126, 1276
TaaI ACNGT 3 cut(s) 605, 822, 1361
TaiI ACGT 1 cut(s) 670
TaqI TCGA 1 cut(s) 1064
TasI AATT 9 cut(s) 4, 280, 710, 898, 994, 1011, 1231, 1436, 1441
TatI WGTACW 2 cut(s) 432, 827
TauI GCSGC 2 cut(s) 771, 1079
TfiI GAWTC 4 cut(s) 155, 335, 1043, 1106
Tru1I TTAA 3 cut(s) 902, 1326, 1444
Tru9I TTAA 3 cut(s) 902, 1326, 1444
TscAI CASTG 9 cut(s) 193, 408, 532, 557, 689, 795, 825, 985, 1078
TseFI GTSAC 1 cut(s) 1056
TseI GCWGC 4 cut(s) 567, 921, 988, 1368
Tsp45I GTSAC 1 cut(s) 1056
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 9 cut(s) 193, 408, 532, 557, 689, 795, 825, 985, 1078
VpaK11BI GGWCC 1 cut(s) 862
XagI CCTNNNNNAGG 1 cut(s) 966
XapI RAATTY 5 cut(s) 4, 710, 898, 994, 1011
XceI RCATGY 1 cut(s) 1346
XmaJI CCTAGG 1 cut(s) 1126
XmnI GAANNNNTTC 3 cut(s) 65, 317, 951
XspI CTAG 2 cut(s) 1047, 1127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.