FvH4_4g23650

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
26083418 .. 26088768
5351 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23650.t1

Sequence Viewer

Length: 1443 bp
ATGAATTCCCCGATGGTGATGGAGTGGAATGAGAAGCCACTTTCACTATGGGACTGGGAGAATGTTTTCATGTTTGGAGCAAAAGTAACTGAAAATGCAAAAAAGCTTCAACCAACAGGCTGGAGTGTTGAAGGAGACCGAGAAATGAACTCTGAATATTTCTATCCGCCTGGGGTTGATGGGGGAAGTGGTGTTTCTGGCTCTGACTTAGGAGACGGTACATCAAAGAGTTCAAAATCAGGTTCTGTCAGTTCTTCAGTTGGGGAAAGTAAGAAATCCAACTTCAGCCTCGAGACTCTTGAAGGTTTCTCGAAGAATTTTGCCGATAAAAAGCAATCAGCAAGAGACATTGAAGCCATTGGATCTTCGCCAACTGAGATTTCGGCTGGCTCTAGTGAGCCATTGCTCAGCCTAAAGCTTGGTAAGCGGATGTACTTTGAAGATGTCTGTGCTGGAAATAATGTCAAGACCTCTGCTGTATCTGTTATTTCCACACCAATGGGGACAAAAGCAAAGAGATTTAAATCCATTGGTCAAAGTACAGTTGCTACATACTGCCAAGTTGAAGGATGCAATATTGATCTGTCATCAGCCAAAGATTACCATCGCAAACATAGGATTTGTGCAAATCACTCCAAATCTCCAAACGTCATTGTAAGTGGTGTAGAACGTCGGTTTTGCCAGCAGTGCAGCAGGTTCCATGGCCTTTCGGAGTTTGATGAAAAGAAGAGAAGCTGTCGCAGGCGTCTTTCAGATCACAATGCTAGGCGTCGCAAACCACAACTAGGAGCATTGGAAGATTCAGCAAGGCTTTCCTCATCACTGTACAGTGCAGATGGGAGGCAACACATGAGCCTAGTTTTGGACCAAGCCCCATTTGCTTACTCGAGGCATGCTAGAAATTTATCATGGGATGCCGCATGTAGTTTCAGGTTCACACAAACAAAAGATTATTTTCCAAATACTTTGAAAGGAGGAGGCACTTCCAAACAGCTACATTTGGCAGAAAATAGCACCCCAGGTTCTGTAACCATGCTTTATCAAGATTCTTGTAGGTTGTCACCATCTAATGGCACAACATCTCAGGTTCTAAATAGAGGTGCCGAAGAATCTATGATCTCTTTCAACCTGGATGCACCGCAAAATCTTAATCGTGCTCTCTCTCTTCTGTCAACCAGCTCATGGGCTTCATCCGAGGCGAAACCTGTTTCACTTGATAACACGAATCACAGCTGTCATACCAATAACCCTCGGCCTGCAATGCAGGCAATGACCCAAGGGTTGCCATTGCCATCAGATTACTGGCAAAATGAACAGGCATCTCTCGTTACTACCCAAGTAAATGTCTGGCATTCACAGAGTAACGGCAGCAACCAATATCAAGATCTTCATATGTTCAAAGGGCCCTATGAGTTCAACTATAACACCAACCAATTCAATTAA

Protein Analysis

481

Amino Acids

53.01

Weight (kDa)

8.67

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 186 - 259 2.6e-32 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 684
AccB1I GGYRCC 1 cut(s) 1100
AccB7I CCANNNNNTGG 2 cut(s) 1070, 1182
AciI CCGC 4 cut(s) 167, 427, 918, 1139
AclWI GGATC 1 cut(s) 370
AcsI RAATTY 3 cut(s) 4, 316, 901
AcuI CTGAAG 2 cut(s) 240, 268
AcyI GRCGYC 2 cut(s) 745, 769
AfaI GTAC 4 cut(s) 220, 434, 541, 827
AfiI CCNNNNNNNGG 4 cut(s) 785, 862, 1070, 1182
AjnI CCWGG 3 cut(s) 169, 1018, 1128
AjuI GAANNNNNNNTTGG 2 cut(s) 364, 396
AluBI AGCT 6 cut(s) 106, 418, 735, 994, 1179, 1233
AluI AGCT 6 cut(s) 106, 418, 735, 994, 1179, 1233
Alw21I GWGCWC 1 cut(s) 1159
Alw26I GTCTC 4 cut(s) 129, 207, 287, 339
AlwI GGATC 1 cut(s) 370
AlwNI CAGNNNCTG 2 cut(s) 245, 1025
Ama87I CYCGRG 2 cut(s) 290, 886
AoxI GGCC 3 cut(s) 703, 1253, 1403
ApaI GGGCCC 1 cut(s) 1407
ApeKI GCWGC 2 cut(s) 690, 1368
ApoI RAATTY 3 cut(s) 4, 316, 901
Asp700I GAANNNNTTC 1 cut(s) 65
AspS9I GGNCC 3 cut(s) 865, 1403, 1404
AsuHPI GGTGA 2 cut(s) 28, 1053
AvaI CYCGRG 2 cut(s) 290, 886
AvaII GGWCC 1 cut(s) 865
BaeGI GKGCMC 1 cut(s) 1407
BanI GGYRCC 1 cut(s) 1100
BanII GRGCYC 1 cut(s) 1407
Bbv12I GWGCWC 1 cut(s) 1159
BbvI GCAGC 2 cut(s) 702, 1380
BccI CCATC 7 cut(s) 7, 13, 173, 612, 830, 1072, 1300
BceAI ACGGC 1 cut(s) 1381
BciT130I CCWGG 3 cut(s) 171, 1020, 1130
BcoDI GTCTC 4 cut(s) 129, 207, 287, 339
BfaI CTAG 5 cut(s) 393, 765, 785, 857, 897
BfuAI ACCTGC 1 cut(s) 684
BglII AGATCT 1 cut(s) 1384
BisI GCNGC 3 cut(s) 691, 918, 1369
BlpI GCTNAGC 1 cut(s) 407
BlsI GCNGC 3 cut(s) 692, 919, 1370
Bme1390I CCNGG 3 cut(s) 171, 1020, 1130
Bme18I GGWCC 1 cut(s) 865
BmeT110I CYCGRG 2 cut(s) 290, 886
BmgT120I GGNCC 3 cut(s) 865, 1403, 1404
BmiI GGNNCC 3 cut(s) 698, 1102, 1405
BmrFI CCNGG 3 cut(s) 171, 1020, 1130
BmrI ACTGGG 1 cut(s) 64
BmsI GCATC 4 cut(s) 560, 904, 1123, 1328
BmuI ACTGGG 1 cut(s) 64
BpmI CTGGAG 1 cut(s) 142
Bpu1102I GCTNAGC 1 cut(s) 407
BsaBI GATNNNNATC 2 cut(s) 523, 603
BsaHI GRCGYC 2 cut(s) 745, 769
BsaI GGTCTC 1 cut(s) 129
BsaJI CCNNGG 6 cut(s) 170, 700, 1018, 1194, 1250, 1276
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 4 cut(s) 785, 862, 1070, 1182
Bse1I ACTGG 2 cut(s) 59, 1307
Bse3DI GCAATG 4 cut(s) 401, 1266, 1275, 1286
Bse8I GATNNNNATC 2 cut(s) 523, 603
BseBI CCWGG 3 cut(s) 171, 1020, 1130
BseDI CCNNGG 6 cut(s) 170, 700, 1018, 1194, 1250, 1276
BseGI GGATG 5 cut(s) 435, 575, 919, 1138, 1190
BseJI GATNNNNATC 2 cut(s) 523, 603
BseLI CCNNNNNNNGG 4 cut(s) 785, 862, 1070, 1182
BseMI GCAATG 4 cut(s) 401, 1266, 1275, 1286
BseMII CTCAG 3 cut(s) 366, 421, 1097
BseNI ACTGG 2 cut(s) 59, 1307
BseRI GAGGAG 1 cut(s) 990
BseSI GKGCMC 1 cut(s) 1407
BseXI GCAGC 2 cut(s) 702, 1380
BsgI GTGCAG 2 cut(s) 709, 852
BshFI GGCC 3 cut(s) 705, 1255, 1405
BshNI GGYRCC 1 cut(s) 1100
BsiHKAI GWGCWC 1 cut(s) 1159
BsiHKCI CYCGRG 2 cut(s) 290, 886
BslFI GGGAC 2 cut(s) 65, 517
BslI CCNNNNNNNGG 4 cut(s) 785, 862, 1070, 1182
BsmAI GTCTC 4 cut(s) 129, 207, 287, 339
BsmBI CGTCTC 1 cut(s) 207
BsmFI GGGAC 2 cut(s) 65, 517
BsmI GAATGC 1 cut(s) 1351
BsnI GGCC 3 cut(s) 705, 1255, 1405
Bso31I GGTCTC 1 cut(s) 129
BsoBI CYCGRG 2 cut(s) 290, 886
Bsp120I GGGCCC 1 cut(s) 1403
Bsp1286I GDGCHC 2 cut(s) 1159, 1407
Bsp1407I TGTACA 1 cut(s) 825
Bsp143I GATC 5 cut(s) 362, 580, 754, 1116, 1384
Bsp1720I GCTNAGC 1 cut(s) 407
Bsp19I CCATGG 1 cut(s) 700
BspACI CCGC 4 cut(s) 167, 427, 918, 1139
BspANI GGCC 3 cut(s) 705, 1255, 1405
BspCNI CTCAG 3 cut(s) 367, 420, 1096
BspLI GGNNCC 3 cut(s) 698, 1102, 1405
BspMI ACCTGC 1 cut(s) 684
BspPI GGATC 1 cut(s) 370
BspT107I GGYRCC 1 cut(s) 1100
BspTNI GGTCTC 1 cut(s) 129
BsrDI GCAATG 4 cut(s) 401, 1266, 1275, 1286
BsrGI TGTACA 1 cut(s) 825
BsrI ACTGG 2 cut(s) 59, 1307
BssECI CCNNGG 6 cut(s) 170, 700, 1018, 1194, 1250, 1276
BssMI GATC 5 cut(s) 362, 580, 754, 1116, 1384
BssNI GRCGYC 2 cut(s) 745, 769
BssT1I CCWWGG 2 cut(s) 700, 1276
Bst2UI CCWGG 3 cut(s) 171, 1020, 1130
Bst4CI ACNGT 4 cut(s) 218, 544, 825, 830
Bst6I CTCTTC 2 cut(s) 722, 1170
BstACI GRCGYC 2 cut(s) 745, 769
BstAUI TGTACA 1 cut(s) 825
BstC8I GCNNGC 6 cut(s) 388, 683, 743, 894, 1257, 1266
BstDEI CTNAG 4 cut(s) 208, 375, 407, 1083
BstDSI CCRYGG 1 cut(s) 700
BstF5I GGATG 5 cut(s) 435, 575, 919, 1138, 1190
BstKTI GATC 5 cut(s) 365, 583, 757, 1119, 1387
BstMAI GTCTC 4 cut(s) 129, 207, 287, 339
BstMBI GATC 5 cut(s) 362, 580, 754, 1116, 1384
BstMWI GCNNNNNNNGC 5 cut(s) 424, 687, 878, 1261, 1265
BstNI CCWGG 3 cut(s) 171, 1020, 1130
BstNSI RCATGY 2 cut(s) 896, 924
BstSCI CCNGG 3 cut(s) 169, 1018, 1128
BstSLI GKGCMC 1 cut(s) 1407
BstV1I GCAGC 2 cut(s) 702, 1380
BstX2I RGATCY 2 cut(s) 362, 1384
BstXI CCANNNNNNTGG 2 cut(s) 120, 499
BstYI RGATCY 2 cut(s) 362, 1384
BsuRI GGCC 3 cut(s) 705, 1255, 1405
BtgI CCRYGG 1 cut(s) 700
BtgZI GCGATG 1 cut(s) 590
BtsCI GGATG 5 cut(s) 435, 575, 919, 1138, 1190
BtsI GCAGTG 1 cut(s) 692
BtsIMutI CAGTG 3 cut(s) 692, 821, 835
BveI ACCTGC 1 cut(s) 684
Cac8I GCNNGC 6 cut(s) 388, 683, 743, 894, 1257, 1266
CaiI CAGNNNCTG 2 cut(s) 245, 1025
Cfr13I GGNCC 3 cut(s) 865, 1403, 1404
CseI GACGC 2 cut(s) 734, 758
Csp6I GTAC 4 cut(s) 219, 433, 540, 826
CviAII CATG 8 cut(s) 70, 701, 850, 893, 909, 921, 1033, 1182
CviQI GTAC 4 cut(s) 219, 433, 540, 826
DdeI CTNAG 4 cut(s) 208, 375, 407, 1083
DpnI GATC 5 cut(s) 364, 582, 756, 1118, 1386
DpnII GATC 5 cut(s) 362, 580, 754, 1116, 1384
DraI TTTAAA 1 cut(s) 523
Eam1104I CTCTTC 2 cut(s) 722, 1170
EarI CTCTTC 2 cut(s) 722, 1170
EciI GGCGGA 1 cut(s) 156
Eco130I CCWWGG 2 cut(s) 700, 1276
Eco24I GRGCYC 1 cut(s) 1407
Eco31I GGTCTC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 865
Eco57I CTGAAG 2 cut(s) 240, 268
Eco88I CYCGRG 2 cut(s) 290, 886
EcoO109I RGGNCCY 2 cut(s) 1403, 1404
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 3 cut(s) 169, 1018, 1128
EcoT14I CCWWGG 2 cut(s) 700, 1276
EcoT38I GRGCYC 1 cut(s) 1407
ErhI CCWWGG 2 cut(s) 700, 1276
Esp3I CGTCTC 1 cut(s) 207
FaeI CATG 8 cut(s) 73, 704, 853, 896, 912, 924, 1036, 1185
FaqI GGGAC 2 cut(s) 65, 517
FatI CATG 8 cut(s) 69, 700, 849, 892, 908, 920, 1032, 1181
FauNDI CATATG 1 cut(s) 1392
Fnu4HI GCNGC 3 cut(s) 691, 918, 1369
FokI GGATG 5 cut(s) 442, 582, 926, 1145, 1177
FriOI GRGCYC 1 cut(s) 1407
Fsp4HI GCNGC 3 cut(s) 691, 918, 1369
FspBI CTAG 5 cut(s) 393, 765, 785, 857, 897
GluI GCNGC 3 cut(s) 691, 918, 1369
GsuI CTGGAG 1 cut(s) 142
HaeIII GGCC 3 cut(s) 705, 1255, 1405
HgaI GACGC 2 cut(s) 734, 758
Hin1I GRCGYC 2 cut(s) 745, 769
Hin1II CATG 8 cut(s) 73, 704, 853, 896, 912, 924, 1036, 1185
HincII GTYRAC 1 cut(s) 1173
HindII GTYRAC 1 cut(s) 1173
HindIII AAGCTT 2 cut(s) 104, 416
HinfI GANTC 5 cut(s) 295, 800, 1046, 1109, 1225
HphI GGTGA 2 cut(s) 28, 1053
Hpy166II GTNNAC 2 cut(s) 936, 1173
Hpy188I TCNGA 6 cut(s) 154, 205, 712, 754, 1195, 1297
Hpy188III TCNNGA 6 cut(s) 292, 299, 310, 466, 1043, 1382
Hpy8I GTNNAC 2 cut(s) 936, 1173
Hpy99I CGWCG 2 cut(s) 675, 774
HpyAV CCTTC 3 cut(s) 125, 296, 560
HpyCH4III ACNGT 4 cut(s) 218, 544, 825, 830
HpyCH4IV ACGT 2 cut(s) 648, 670
HpyCH4V TGCA 8 cut(s) 98, 573, 626, 690, 833, 1136, 1259, 1264
HpyF10VI GCNNNNNNNGC 5 cut(s) 424, 687, 878, 1261, 1265
HpyF3I CTNAG 4 cut(s) 208, 375, 407, 1083
HpySE526I ACGT 2 cut(s) 648, 670
Hsp92I GRCGYC 2 cut(s) 745, 769
Hsp92II CATG 8 cut(s) 73, 704, 853, 896, 912, 924, 1036, 1185
Kzo9I GATC 5 cut(s) 362, 580, 754, 1116, 1384
LmnI GCTCC 2 cut(s) 77, 788
Lsp1109I GCAGC 2 cut(s) 702, 1380
LweI GCATC 4 cut(s) 560, 904, 1123, 1328
MaeI CTAG 5 cut(s) 393, 765, 785, 857, 897
MaeII ACGT 2 cut(s) 648, 670
MaeIII GTNAC 5 cut(s) 85, 1027, 1059, 1327, 1361
MalI GATC 5 cut(s) 364, 582, 756, 1118, 1386
MboI GATC 5 cut(s) 362, 580, 754, 1116, 1384
MboII GAAGA 9 cut(s) 246, 325, 357, 452, 739, 809, 1118, 1157, 1379
MflI RGATCY 2 cut(s) 362, 1384
MhlI GDGCHC 2 cut(s) 1159, 1407
MluCI AATT 5 cut(s) 4, 316, 901, 1433, 1438
MlyI GAGTC 1 cut(s) 289
MmeI TCCRAC 1 cut(s) 303
MroXI GAANNNNTTC 1 cut(s) 65
MseI TTAA 3 cut(s) 522, 1149, 1441
MslI CAYNNNNRTG 1 cut(s) 497
MspA1I CMGCKG 1 cut(s) 1233
MspR9I CCNGG 3 cut(s) 171, 1020, 1130
Mva1269I GAATGC 1 cut(s) 1351
MvaI CCWGG 3 cut(s) 171, 1020, 1130
MwoI GCNNNNNNNGC 5 cut(s) 424, 687, 878, 1261, 1265
NcoI CCATGG 1 cut(s) 700
NdeI CATATG 1 cut(s) 1392
NdeII GATC 5 cut(s) 362, 580, 754, 1116, 1384
NlaIII CATG 8 cut(s) 73, 704, 853, 896, 912, 924, 1036, 1185
NlaIV GGNNCC 3 cut(s) 698, 1102, 1405
NmeAIII GCCGAG 1 cut(s) 1231
NmuCI GTSAC 1 cut(s) 1059
NspI RCATGY 2 cut(s) 896, 924
PaeI GCATGC 1 cut(s) 896
PaeR7I CTCGAG 2 cut(s) 290, 886
PctI GAATGC 1 cut(s) 1351
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 4 cut(s) 800, 1046, 1109, 1225
PflMI CCANNNNNTGG 2 cut(s) 1070, 1182
PkrI GCNGC 3 cut(s) 692, 919, 1370
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
Psp6I CCWGG 3 cut(s) 169, 1018, 1128
PspGI CCWGG 3 cut(s) 169, 1018, 1128
PspN4I GGNNCC 3 cut(s) 698, 1102, 1405
PspOMI GGGCCC 1 cut(s) 1403
PspPI GGNCC 3 cut(s) 865, 1403, 1404
PspXI VCTCGAGB 1 cut(s) 886
PstNI CAGNNNCTG 2 cut(s) 245, 1025
PsuI RGATCY 2 cut(s) 362, 1384
PvuII CAGCTG 1 cut(s) 1233
RsaI GTAC 4 cut(s) 220, 434, 541, 827
RsaNI GTAC 4 cut(s) 219, 433, 540, 826
RseI CAYNNNNRTG 1 cut(s) 497
SaqAI TTAA 3 cut(s) 522, 1149, 1441
SatI GCNGC 3 cut(s) 691, 918, 1369
Sau3AI GATC 5 cut(s) 362, 580, 754, 1116, 1384
Sau96I GGNCC 3 cut(s) 865, 1403, 1404
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 3 cut(s) 171, 1020, 1130
SduI GDGCHC 2 cut(s) 1159, 1407
SfaNI GCATC 4 cut(s) 560, 904, 1123, 1328
Sfr274I CTCGAG 2 cut(s) 290, 886
SinI GGWCC 1 cut(s) 865
SlaI CTCGAG 2 cut(s) 290, 886
SmiI ATTTAAAT 1 cut(s) 523
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 2 cut(s) 290, 886
SmoI CTYRAG 2 cut(s) 290, 886
SphI GCATGC 1 cut(s) 896
Sse9I AATT 5 cut(s) 4, 316, 901, 1433, 1438
SsiI CCGC 4 cut(s) 167, 427, 918, 1139
SspI AATATT 2 cut(s) 158, 577
SspMI CTAG 5 cut(s) 393, 765, 785, 857, 897
StyD4I CCNGG 3 cut(s) 169, 1018, 1128
StyI CCWWGG 2 cut(s) 700, 1276
SwaI ATTTAAAT 1 cut(s) 523
TaaI ACNGT 4 cut(s) 218, 544, 825, 830
TaiI ACGT 2 cut(s) 651, 673
TaqI TCGA 3 cut(s) 291, 311, 887
TaqII GACCGA 1 cut(s) 153
TasI AATT 5 cut(s) 4, 316, 901, 1433, 1438
TatI WGTACW 3 cut(s) 432, 539, 825
TauI GCSGC 1 cut(s) 920
TfiI GAWTC 4 cut(s) 800, 1046, 1109, 1225
Tru1I TTAA 3 cut(s) 522, 1149, 1441
Tru9I TTAA 3 cut(s) 522, 1149, 1441
TscAI CASTG 3 cut(s) 692, 828, 835
TseFI GTSAC 1 cut(s) 1059
TseI GCWGC 2 cut(s) 690, 1368
Tsp45I GTSAC 1 cut(s) 1059
TspDTI ATGAA 7 cut(s) 17, 58, 161, 735, 1179, 1326, 1379
TspRI CASTG 3 cut(s) 692, 828, 835
Van91I CCANNNNNTGG 2 cut(s) 1070, 1182
VpaK11BI GGWCC 1 cut(s) 865
XapI RAATTY 3 cut(s) 4, 316, 901
XceI RCATGY 2 cut(s) 896, 924
XcmI CCANNNNNNNNNTGG 2 cut(s) 45, 1299
XhoI CTCGAG 2 cut(s) 290, 886
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 5 cut(s) 393, 765, 785, 857, 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.