Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004097

Physical Location & Seq

Genomic Coordinates Reverse (-)

40913667 .. 40915853

Gene Structure 2187 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0240500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCCGTCACCTTCACAGATCTCTACACCGAAGCCGGCCTCAAGTCCCTCGAGGCCTACCTCTCCGGCAAAACCTACATCTCCGGAGATCAGCTGACGAAGGATGACATCAAGGTGTACGCAGCCGTGTTGGAGAAGCCAGCGAGTTCCTTCCCCAATGTGAGCAAGTGGTACGACTGCGTTTCGTCCCAGCTCGCCAAAAGCTTCCCCGGAAAAGCTGCTGGTGTCAGAGTAAGCAACCAAGCTGCTCCTGCCGCGGCACCAAAGGCTGCAGCAGAAGATGATGATGACCTTGATCTCTTCGGTGATGAAACAGAGGAGGACAAGAAGGCAGCAGAGGAGATTCAGGCAGCTAAGAAGCCTTCCGCCAAGAAGAAAGAGAGTGGAAAATCCTCTGTCCTTCTGGATGTGAAGCCATGGGATGATGAAACAGACATGAAGAAGCTTGAAGAGGCTGTTAGAAGCATTGAAATGGAGGGTCTCTTCTGGGGTGCATCAAAACTGGTGCCAGTTGGTTATGGGATAAAGAAGCTCCAGATCATGCTCACTATTGTCGATGATCTGGTGTCTGTGGATACTCTCATCGAGGAGCGTCTTACTGTTGAGCCGTGTGATGAGTGGATCCAGAGCTGTGACATTGTTGCCTTCAACAAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009965 GO:0010016 GO:0010358 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048532 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

219

Amino Acids

23.92

Weight (kDa)

4.58

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF1_GNE	PF00736	132 - 219	1.1e-31	EF-1 guanine nucleotide exchange domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43270 AT5G43270 AT5G43270
fragaria_vesca	FvH4_4g23650 FvH4_4g23650 FvH4_4g23650 FvH4_4g23650 FvH4_4g23650
malus_domestica	MD13G1120300.v1.1 MD16G1120300.v1.1
prunus_persica	Prupe.1G224900_v2.0.a1 Prupe.1G224900_v2.0.a1 Prupe.1G224900_v2.0.a1 Prupe.1G224900_v2.0.a1 Prupe.1G224900_v2.0.a1 Prupe.1G224900_v2.0.a1
pyrus_communis	pycom13g10470 pycom16g10280
rosa_chinensis	RchiOBHm_Chr4g0430121
rosa_laevigata	RLG00000007002
rosa_multiflora	Rmu_co8521931.1_g000002 Rmu_ssc0000150.1_g000023
rosa_roxburghii	Rroxscaffold_5G00371930
rosa_rugosa	Rorug04G0240300 Rorug04G0240400 Rorug04G0240400 Rorug04G0240500 Rorug04G0240600
rosa_samantha	Rh4AG297400 Rh4BG303800 Rh4CG319400 Rh4DG301300
rosa_wichuraiana	Rw4G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	50
AccB1I	GGYRCC	2 cut(s)	259, 505
AccII	CGCG	1 cut(s)	257
AccIII	TCCGGA	1 cut(s)	83
AciI	CCGC	3 cut(s)	255, 257, 366
AclWI	GGATC	2 cut(s)	616, 629
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	2 cut(s)	119, 173
AgsI	TTSAA	3 cut(s)	449, 470, 649
AluBI	AGCT	9 cut(s)	94, 193, 204, 218, 245, 353, 445, 532, 630
AluI	AGCT	9 cut(s)	94, 193, 204, 218, 245, 353, 445, 532, 630
Alw26I	GTCTC	1 cut(s)	485
AlwI	GGATC	2 cut(s)	616, 629
Ama87I	CYCGRG	1 cut(s)	50
Aor13HI	TCCGGA	1 cut(s)	83
AoxI	GGCC	3 cut(s)	3, 37, 54
ApeKI	GCWGC	7 cut(s)	122, 218, 245, 269, 272, 332, 350
AsuC2I	CCSGG	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	317
AvaI	CYCGRG	1 cut(s)	50
BamHI	GGATCC	1 cut(s)	621
BanI	GGYRCC	2 cut(s)	259, 505
BbvI	GCAGC	7 cut(s)	134, 205, 232, 256, 284, 344, 362
BceAI	ACGGC	2 cut(s)	110, 592
BciVI	GTATCC	1 cut(s)	568
BcnI	CCSGG	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	485
BfmI	CTRYAG	1 cut(s)	270
BfuI	GTATCC	1 cut(s)	568
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	9 cut(s)	123, 219, 246, 255, 258, 270, 273, 333, 351
BlsI	GCNGC	9 cut(s)	124, 220, 247, 256, 259, 271, 274, 334, 352
Bme1390I	CCNGG	1 cut(s)	210
BmeT110I	CYCGRG	1 cut(s)	50
BmiI	GGNNCC	3 cut(s)	261, 507, 623
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	1 cut(s)	503
BpmI	CTGGAG	1 cut(s)	518
BpuEI	CTTGAG	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	485
BsaJI	CCNNGG	3 cut(s)	208, 255, 416
BsaWI	WCCGGW	1 cut(s)	83
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	2 cut(s)	507, 509
BseAI	TCCGGA	1 cut(s)	83
BseDI	CCNNGG	3 cut(s)	208, 255, 416
BseGI	GGATG	3 cut(s)	109, 412, 427
BseNI	ACTGG	2 cut(s)	507, 509
BseRI	GAGGAG	3 cut(s)	332, 353, 602
BseXI	GCAGC	7 cut(s)	134, 205, 232, 256, 284, 344, 362
BseYI	CCCAGC	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	257
BshFI	GGCC	3 cut(s)	5, 39, 56
BshNI	GGYRCC	2 cut(s)	259, 505
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	4 cut(s)	36, 66, 84, 210
BslFI	GGGAC	2 cut(s)	31, 172
BsmAI	GTCTC	1 cut(s)	485
BsmFI	GGGAC	2 cut(s)	31, 172
BsnI	GGCC	3 cut(s)	5, 39, 56
Bso31I	GGTCTC	1 cut(s)	485
BsoBI	CYCGRG	1 cut(s)	50
Bsp13I	TCCGGA	1 cut(s)	83
Bsp143I	GATC	6 cut(s)	19, 88, 295, 537, 559, 621
Bsp19I	CCATGG	1 cut(s)	416
BspACI	CCGC	3 cut(s)	255, 257, 366
BspANI	GGCC	3 cut(s)	5, 39, 56
BspEI	TCCGGA	1 cut(s)	83
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	3 cut(s)	261, 507, 623
BspMAI	CTGCAG	1 cut(s)	274
BspPI	GGATC	2 cut(s)	616, 629
BspT107I	GGYRCC	2 cut(s)	259, 505
BspTNI	GGTCTC	1 cut(s)	485
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	2 cut(s)	507, 509
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	3 cut(s)	208, 255, 416
BssMI	GATC	6 cut(s)	19, 88, 295, 537, 559, 621
BssT1I	CCWWGG	1 cut(s)	416
Bst4CI	ACNGT	1 cut(s)	601
Bst6I	CTCTTC	3 cut(s)	305, 444, 488
BstC8I	GCNNGC	3 cut(s)	37, 141, 195
BstDEI	CTNAG	1 cut(s)	354
BstDSI	CCRYGG	2 cut(s)	255, 416
BstF5I	GGATG	3 cut(s)	109, 412, 427
BstFNI	CGCG	1 cut(s)	257
BstKTI	GATC	6 cut(s)	22, 91, 298, 540, 562, 624
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	6 cut(s)	19, 88, 295, 537, 559, 621
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 254, 266
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	270
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	7 cut(s)	134, 205, 232, 256, 284, 344, 362
BstX2I	RGATCY	2 cut(s)	19, 621
BstYI	RGATCY	2 cut(s)	19, 621
BsuI	GTATCC	1 cut(s)	568
BsuRI	GGCC	3 cut(s)	5, 39, 56
BtgI	CCRYGG	2 cut(s)	255, 416
BtsCI	GGATG	3 cut(s)	109, 412, 427
Cac8I	GCNNGC	3 cut(s)	37, 141, 195
Cfr10I	RCCGGY	1 cut(s)	35
Cfr42I	CCGCGG	1 cut(s)	258
CseI	GACGC	1 cut(s)	581
Csp6I	GTAC	2 cut(s)	118, 172
CviAII	CATG	3 cut(s)	417, 436, 541
CviQI	GTAC	2 cut(s)	118, 172
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	6 cut(s)	21, 90, 297, 539, 561, 623
DpnII	GATC	6 cut(s)	19, 88, 295, 537, 559, 621
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	305, 444, 488
EarI	CTCTTC	3 cut(s)	305, 444, 488
EciI	GGCGGA	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	416
Eco147I	AGGCCT	1 cut(s)	56
Eco31I	GGTCTC	1 cut(s)	485
Eco88I	CYCGRG	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	416
ErhI	CCWWGG	1 cut(s)	416
FaeI	CATG	3 cut(s)	420, 439, 544
FaiI	YATR	4 cut(s)	418, 437, 519, 542
FaqI	GGGAC	2 cut(s)	31, 172
FatI	CATG	3 cut(s)	416, 435, 540
Fnu4HI	GCNGC	9 cut(s)	123, 219, 246, 255, 258, 270, 273, 333, 351
FokI	GGATG	3 cut(s)	116, 419, 434
Fsp4HI	GCNGC	9 cut(s)	123, 219, 246, 255, 258, 270, 273, 333, 351
GluI	GCNGC	9 cut(s)	123, 219, 246, 255, 258, 270, 273, 333, 351
GsaI	CCCAGC	1 cut(s)	193
GsuI	CTGGAG	1 cut(s)	518
HaeIII	GGCC	3 cut(s)	5, 39, 56
HapII	CCGG	4 cut(s)	36, 66, 84, 210
HgaI	GACGC	1 cut(s)	581
Hin1II	CATG	3 cut(s)	420, 439, 544
HindIII	AAGCTT	2 cut(s)	202, 443
HinfI	GANTC	1 cut(s)	343
HpaII	CCGG	4 cut(s)	36, 66, 84, 210
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	1 cut(s)	230
Hpy188III	TCNNGA	4 cut(s)	84, 404, 535, 625
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	7 cut(s)	22, 94, 160, 322, 372, 410, 655
HpyCH4III	ACNGT	1 cut(s)	601
HpyCH4V	TGCA	2 cut(s)	272, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 254, 266
HpyF3I	CTNAG	1 cut(s)	354
Hsp92II	CATG	3 cut(s)	420, 439, 544
Kpn2I	TCCGGA	1 cut(s)	83
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
KspI	CCGCGG	1 cut(s)	258
Kzo9I	GATC	6 cut(s)	19, 88, 295, 537, 559, 621
LmnI	GCTCC	3 cut(s)	253, 537, 589
Lsp1109I	GCAGC	7 cut(s)	134, 205, 232, 256, 284, 344, 362
LweI	GCATC	1 cut(s)	503
MaeIII	GTNAC	2 cut(s)	7, 632
MalI	GATC	6 cut(s)	21, 90, 297, 539, 561, 623
MboI	GATC	6 cut(s)	19, 88, 295, 537, 559, 621
MboII	GAAGA	6 cut(s)	290, 292, 385, 451, 461, 475
MflI	RGATCY	2 cut(s)	19, 621
MmeI	TCCRAC	1 cut(s)	111
MroI	TCCGGA	1 cut(s)	83
MroNI	GCCGGC	1 cut(s)	35
MseI	TTAA	1 cut(s)	658
MslI	CAYNNNNRTG	2 cut(s)	113, 470
MspA1I	CMGCKG	2 cut(s)	94, 257
MspI	CCGG	4 cut(s)	36, 66, 84, 210
MspR9I	CCNGG	1 cut(s)	210
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	3 cut(s)	251, 254, 266
NaeI	GCCGGC	1 cut(s)	37
NciI	CCSGG	1 cut(s)	210
NcoI	CCATGG	1 cut(s)	416
NdeII	GATC	6 cut(s)	19, 88, 295, 537, 559, 621
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	3 cut(s)	420, 439, 544
NlaIV	GGNNCC	3 cut(s)	261, 507, 623
NmuCI	GTSAC	2 cut(s)	7, 632
PaeR7I	CTCGAG	1 cut(s)	50
PceI	AGGCCT	1 cut(s)	56
PdiI	GCCGGC	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	343
PkrI	GCNGC	9 cut(s)	124, 220, 247, 256, 259, 271, 274, 334, 352
PspFI	CCCAGC	1 cut(s)	189
PspN4I	GGNNCC	3 cut(s)	261, 507, 623
PspXI	VCTCGAGB	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	274
PsuI	RGATCY	2 cut(s)	19, 621
PvuII	CAGCTG	1 cut(s)	94
RsaI	GTAC	2 cut(s)	119, 173
RsaNI	GTAC	2 cut(s)	118, 172
RseI	CAYNNNNRTG	2 cut(s)	113, 470
SacII	CCGCGG	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	658
SatI	GCNGC	9 cut(s)	123, 219, 246, 255, 258, 270, 273, 333, 351
Sau3AI	GATC	6 cut(s)	19, 88, 295, 537, 559, 621
ScrFI	CCNGG	1 cut(s)	210
SfaNI	GCATC	1 cut(s)	503
SfcI	CTRYAG	1 cut(s)	270
Sfr274I	CTCGAG	1 cut(s)	50
Sfr303I	CCGCGG	1 cut(s)	258
SgrBI	CCGCGG	1 cut(s)	258
SlaI	CTCGAG	1 cut(s)	50
SmiMI	CAYNNNNRTG	2 cut(s)	113, 470
SmlI	CTYRAG	2 cut(s)	41, 50
SmoI	CTYRAG	2 cut(s)	41, 50
SseBI	AGGCCT	1 cut(s)	56
SsiI	CCGC	3 cut(s)	255, 257, 366
StuI	AGGCCT	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	208
StyI	CCWWGG	1 cut(s)	416
TaaI	ACNGT	1 cut(s)	601
TaqI	TCGA	3 cut(s)	51, 555, 585
TauI	GCSGC	2 cut(s)	257, 260
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	1 cut(s)	658
Tru9I	TTAA	1 cut(s)	658
TseFI	GTSAC	2 cut(s)	7, 632
TseI	GCWGC	7 cut(s)	122, 218, 245, 269, 272, 332, 350
Tsp45I	GTSAC	2 cut(s)	7, 632
TspDTI	ATGAA	3 cut(s)	324, 441, 452
XhoI	CTCGAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.