Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004097

Physical Location & Seq

Genomic Coordinates Reverse (-)

40907092 .. 40907388

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0240300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTCATCAATAGATGATGTAACGGCTTCCTTCACTGCCTCCTTGGCCTTACCTGGCTCCAACGTCGTCGATATCTCGTGGAAGATTGGAGGAGCACAGAGGCGTGCGACACAATCTTACCTTGTGGCACGACTCCTGGCTTCCAAGCCGGCAACCCTGAACGATCTCAGACACTTCTTCAAGTTTGTATGGGTCCTTGATCGTAGTTTCAAGATACATGAAAGGGATAACAATTGTTTCATTCTGGCTTTTGATCTGTTACGTGACCGCAACAAGGTACTGAAGGGAGGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009965 GO:0010016 GO:0010358 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048532 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

98

Amino Acids

11.01

Weight (kDa)

9.89

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	38 - 98	3.1e-10	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43270 AT5G43270 AT5G43270
fragaria_vesca	FvH4_4g23650 FvH4_4g23650 FvH4_4g23650 FvH4_4g23650 FvH4_4g23650
malus_domestica	MD13G1120300.v1.1 MD16G1120300.v1.1
prunus_persica	Prupe.1G224900_v2.0.a1 Prupe.1G224900_v2.0.a1 Prupe.1G224900_v2.0.a1 Prupe.1G224900_v2.0.a1 Prupe.1G224900_v2.0.a1 Prupe.1G224900_v2.0.a1
pyrus_communis	pycom13g10470 pycom16g10280
rosa_chinensis	RchiOBHm_Chr4g0430121
rosa_laevigata	RLG00000007002
rosa_multiflora	Rmu_co8521931.1_g000002 Rmu_ssc0000150.1_g000023
rosa_roxburghii	Rroxscaffold_5G00371930
rosa_rugosa	Rorug04G0240300 Rorug04G0240400 Rorug04G0240400 Rorug04G0240500 Rorug04G0240600
rosa_samantha	Rh4AG297400 Rh4BG303800 Rh4CG319400 Rh4DG301300
rosa_wichuraiana	Rw4G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	268
AfaI	GTAC	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	2 cut(s)	181, 211
AjnI	CCWGG	2 cut(s)	52, 135
Alw21I	GWGCWC	1 cut(s)	97
AoxI	GGCC	1 cut(s)	45
AspS9I	GGNCC	2 cut(s)	193, 290
AvaII	GGWCC	2 cut(s)	193, 290
BauI	CACGAG	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	97
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	2 cut(s)	54, 137
BglI	GCCNNNNNGGC	1 cut(s)	44
Bme1390I	CCNGG	2 cut(s)	54, 137
Bme18I	GGWCC	2 cut(s)	193, 290
BmgT120I	GGNCC	2 cut(s)	193, 290
BmiI	GGNNCC	2 cut(s)	58, 194
BmrFI	CCNGG	2 cut(s)	54, 137
BsaAI	YACGTR	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse118I	RCCGGY	1 cut(s)	148
BseBI	CCWGG	2 cut(s)	54, 137
BseDI	CCNNGG	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	274
BsnI	GGCC	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp143I	GATC	3 cut(s)	163, 199, 253
BspACI	CCGC	1 cut(s)	268
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	58, 194
BsrFI	RCCGGY	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	3 cut(s)	163, 199, 253
BssSI	CACGAG	1 cut(s)	76
BssT1I	CCWWGG	1 cut(s)	42
Bst2BI	CACGAG	1 cut(s)	76
Bst2UI	CCWGG	2 cut(s)	54, 137
BstBAI	YACGTR	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	105, 150
BstDEI	CTNAG	1 cut(s)	167
BstKTI	GATC	3 cut(s)	166, 202, 256
BstMBI	GATC	3 cut(s)	163, 199, 253
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNI	CCWGG	2 cut(s)	54, 137
BstSCI	CCNGG	2 cut(s)	52, 135
BsuRI	GGCC	1 cut(s)	47
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	2 cut(s)	105, 150
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	193, 290
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	6 cut(s)	26, 47, 57, 140, 148, 248
CviKI_1	RGCY	6 cut(s)	26, 47, 57, 140, 148, 248
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	3 cut(s)	165, 201, 255
DpnII	GATC	3 cut(s)	163, 199, 253
Eco130I	CCWWGG	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	73
Eco47I	GGWCC	2 cut(s)	193, 290
EcoO109I	RGGNCCY	2 cut(s)	193, 290
EcoRII	CCWGG	2 cut(s)	52, 135
EcoRV	GATATC	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	1 cut(s)	221
FaiI	YATR	2 cut(s)	190, 219
FatI	CATG	1 cut(s)	217
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	1 cut(s)	149
Hin1II	CATG	1 cut(s)	221
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	1 cut(s)	149
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	1 cut(s)	211
Hpy99I	CGWCG	2 cut(s)	68, 71
HpyAV	CCTTC	2 cut(s)	40, 277
HpyCH4IV	ACGT	2 cut(s)	63, 262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	2 cut(s)	63, 262
Hsp92II	CATG	1 cut(s)	221
KroI	GCCGGC	1 cut(s)	148
KroNI	GCCGGC	1 cut(s)	150
Kzo9I	GATC	3 cut(s)	163, 199, 253
LmnI	GCTCC	2 cut(s)	62, 92
LpnPI	CCDG	7 cut(s)	39, 66, 122, 149, 162, 170, 230
MaeII	ACGT	2 cut(s)	63, 262
MaeIII	GTNAC	3 cut(s)	19, 258, 263
MalI	GATC	3 cut(s)	165, 201, 255
MboI	GATC	3 cut(s)	163, 199, 253
MboII	GAAGA	2 cut(s)	94, 169
MfeI	CAATTG	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	1 cut(s)	232
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	4 cut(s)	49, 83, 93, 281
MroNI	GCCGGC	1 cut(s)	148
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	2 cut(s)	54, 137
MunI	CAATTG	1 cut(s)	232
MvaI	CCWGG	2 cut(s)	54, 137
MwoI	GCNNNNNNNGC	1 cut(s)	44
NaeI	GCCGGC	1 cut(s)	150
NdeII	GATC	3 cut(s)	163, 199, 253
NgoMIV	GCCGGC	1 cut(s)	148
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	2 cut(s)	58, 194
NmuCI	GTSAC	1 cut(s)	263
PdiI	GCCGGC	1 cut(s)	150
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
Ppu21I	YACGTR	1 cut(s)	263
PpuMI	RGGWCCY	2 cut(s)	193, 290
Psp5II	RGGWCCY	2 cut(s)	193, 290
Psp6I	CCWGG	2 cut(s)	52, 135
PspGI	CCWGG	2 cut(s)	52, 135
PspN4I	GGNNCC	2 cut(s)	58, 194
PspPI	GGNCC	2 cut(s)	193, 290
PspPPI	RGGWCCY	2 cut(s)	193, 290
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
Sau3AI	GATC	3 cut(s)	163, 199, 253
Sau96I	GGNCC	2 cut(s)	193, 290
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	2 cut(s)	54, 137
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	6 cut(s)	55, 66, 123, 265, 279, 295
SinI	GGWCC	2 cut(s)	193, 290
Sse9I	AATT	1 cut(s)	232
SsiI	CCGC	1 cut(s)	268
StyD4I	CCNGG	2 cut(s)	52, 135
StyI	CCWWGG	1 cut(s)	42
TaiI	ACGT	2 cut(s)	66, 265
TaqI	TCGA	1 cut(s)	69
TasI	AATT	1 cut(s)	232
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	2 cut(s)	229, 234
TspRI	CASTG	1 cut(s)	40
VpaK11BI	GGWCC	2 cut(s)	193, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.