RLG00000007002

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
12627219 .. 12629520
2302 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007002

Sequence Viewer

Length: 1425 bp
ATGGAGTGGAATGAGAAGCATCCTTCACTATGGGACTGGGAGAATGTTTTCATGTTTGGAGCAAAAGTAACTGAAAATCCGAAGAAGCTTCAACCAACAGACTGGAGTGTTGAAGGAGAACGAGGAATGAACTCTGAATCTTTCTATTCGCCTGGGGGTGATGGGGGAAGTGGTGTTTCTGGTTCTGACTTAGGAGATGGTACATCAAAGAGTTCAAAATCAGGTTCTGTGAATTCTTCAGTTGGGGAAAGTAAGAAATCCAACTTCAGCCTTGAGGCTTTTGAAGGTTTCCCAAAGGATTTTGTTGATAAAAAACAATCAGCTAGAGAAGCTGAAGCCCTTGGATCTTCGCCAACTCATGAGATTTCAGCTGGCTCTGGTGAGCCATTGCTCAGCCTAAAGCTTGGTAAGCGGATGTACTTTGAAGATGTTTGTGCAGGAAATAATGCTAAGACCTCTGCTGTGTCTGTTATATCCACACCAATGGGAACAAAATCAAAGAGATTTAAGTCCATTGGTCAAAGTACCGCTGCTACTCGCTGCCAAGTTGAAGGCTGCAATATTGATCTCTCATCAGCGAAAGATTACCATCGCAAACATAGGATTTGTGCAAATCATTCCAAATCACCAAAGGTCGTTGTTAATGGTGTGGAACGTCGGTTTTGCCAGCAATGTAGCAGGTTCCATGGCCTTTCTGAATTTGATGAAAAGAAGAGAAGCTGTCGCAGGCGTCTGTCAGATCACAACGCAAGGCGTCGCAAACCACTGCCAGGAGCACTGCGAGATCGAGCGAGGCTGTCCTCATCACTGTACAGTACAGATGGGAGGCAACACATGAGCCTTGTTTTGGACCAAGCCCCATGTGTTTACTCGAGGAATGCTACAAATTTATCATGGGATGGCGCATGTAGCTTCAGGTTGACACCAACAAAAGATTATTTTCCAAATCCTGCAAGAGGAGGCACTTCCAGACAGCAAAATTTGGCTGAAAATCAAACGTCAAGTTCCTTAACAATGCTTTATCAAGATTCTAGTAGGTTGCCACCATCCAAGGGCACAGCATCACAAGTTCTAAATCGAGGTGCCGAAGAGTCTATGATCTCTTTCAACCTGGATGCACCACAGAATCTTAATCGTGCTCTCTCTCTTCTGTCAACCAGTTCGTGGGCTTCATGCGAGGCAAAACCTGTCTCACTTGATAATACCAATCACAGTTATCATACCAACATGCCCCGGCCTGTGATGCAGGCAATGAACCAAGGGTTGCCATTGTCGTCAGAATACTGGCAAAATGAACAGCCGTCCCTCGACACCACCCAAGTCAATGTCTCACATTCACAGAGTAACGGCAGCAACCAATATCAGGATCTTCATTTGTTCAAGGGGCCCTATGAGTTCGGCTATAACACCAACCAATTCAATTAA

Protein Analysis

475

Amino Acids

52.33

Weight (kDa)

8.95

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 181 - 254 2.1e-32 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 669
AccB1I GGYRCC 1 cut(s) 1082
AccB7I CCANNNNNTGG 1 cut(s) 1164
AciI CCGC 2 cut(s) 412, 528
AclWI GGATC 2 cut(s) 352, 1374
AcsI RAATTY 4 cut(s) 232, 698, 886, 979
AcuI CTGAAG 4 cut(s) 222, 250, 354, 898
AcyI GRCGYC 2 cut(s) 730, 754
AfaI GTAC 5 cut(s) 202, 419, 526, 812, 817
AfiI CCNNNNNNNGG 6 cut(s) 770, 847, 956, 1052, 1164, 1363
AgsI TTSAA 9 cut(s) 92, 113, 216, 284, 425, 551, 1108, 1381, 1420
AjnI CCWGG 3 cut(s) 151, 769, 1110
AluBI AGCT 7 cut(s) 88, 323, 332, 371, 403, 720, 912
AluI AGCT 7 cut(s) 88, 323, 332, 371, 403, 720, 912
Alw21I GWGCWC 2 cut(s) 778, 1141
Alw26I GTCTC 2 cut(s) 1195, 1333
AlwI GGATC 2 cut(s) 352, 1374
AlwNI CAGNNNCTG 1 cut(s) 227
Ama87I CYCGRG 1 cut(s) 871
AoxI GGCC 3 cut(s) 688, 1235, 1385
ApaI GGGCCC 1 cut(s) 1389
ApeKI GCWGC 4 cut(s) 530, 540, 555, 1350
ApoI RAATTY 4 cut(s) 232, 698, 886, 979
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 1 cut(s) 905
AspS9I GGNCC 3 cut(s) 850, 1385, 1386
AsuC2I CCSGG 1 cut(s) 1234
AsuHPI GGTGA 3 cut(s) 170, 392, 618
AvaI CYCGRG 1 cut(s) 871
AvaII GGWCC 1 cut(s) 850
BaeGI GKGCMC 2 cut(s) 1058, 1389
BanI GGYRCC 1 cut(s) 1082
BanII GRGCYC 1 cut(s) 1389
Bbv12I GWGCWC 2 cut(s) 778, 1141
BbvI GCAGC 4 cut(s) 517, 527, 542, 1362
BccI CCATC 6 cut(s) 155, 191, 597, 815, 893, 1054
BceAI ACGGC 2 cut(s) 1285, 1363
BciT130I CCWGG 3 cut(s) 153, 771, 1112
BcnI CCSGG 1 cut(s) 1234
BcoDI GTCTC 2 cut(s) 1195, 1333
BfaI CTAG 2 cut(s) 324, 1032
BfuAI ACCTGC 1 cut(s) 669
BisI GCNGC 4 cut(s) 531, 541, 556, 1351
BlpI GCTNAGC 1 cut(s) 392
BlsI GCNGC 4 cut(s) 532, 542, 557, 1352
Bme1390I CCNGG 4 cut(s) 153, 771, 1112, 1234
Bme18I GGWCC 1 cut(s) 850
BmeT110I CYCGRG 1 cut(s) 871
BmgT120I GGNCC 3 cut(s) 850, 1385, 1386
BmiI GGNNCC 4 cut(s) 683, 1084, 1386, 1387
BmrFI CCNGG 4 cut(s) 153, 771, 1112, 1234
BmrI ACTGGG 1 cut(s) 46
BmsI GCATC 4 cut(s) 28, 1070, 1105, 1233
BmuI ACTGGG 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 124
Bpu1102I GCTNAGC 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 1234
BsaBI GATNNNNATC 1 cut(s) 588
BsaHI GRCGYC 2 cut(s) 730, 754
BsaJI CCNNGG 6 cut(s) 152, 340, 685, 1050, 1232, 1258
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 6 cut(s) 770, 847, 956, 1052, 1164, 1363
Bse1I ACTGG 4 cut(s) 41, 107, 1158, 1289
Bse3DI GCAATG 3 cut(s) 386, 677, 1257
Bse8I GATNNNNATC 1 cut(s) 588
BseBI CCWGG 3 cut(s) 153, 771, 1112
BseDI CCNNGG 6 cut(s) 152, 340, 685, 1050, 1232, 1258
BseGI GGATG 5 cut(s) 19, 420, 904, 1046, 1120
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 6 cut(s) 770, 847, 956, 1052, 1164, 1363
BseMI GCAATG 3 cut(s) 386, 677, 1257
BseMII CTCAG 1 cut(s) 406
BseNI ACTGG 4 cut(s) 41, 107, 1158, 1289
BseRI GAGGAG 1 cut(s) 972
BseSI GKGCMC 2 cut(s) 1058, 1389
BseXI GCAGC 4 cut(s) 517, 527, 542, 1362
BsgI GTGCAG 1 cut(s) 456
BshFI GGCC 3 cut(s) 690, 1237, 1387
BshNI GGYRCC 1 cut(s) 1082
BsiHKAI GWGCWC 2 cut(s) 778, 1141
BsiHKCI CYCGRG 1 cut(s) 871
BsiSI CCGG 1 cut(s) 1234
BslFI GGGAC 2 cut(s) 47, 1288
BslI CCNNNNNNNGG 6 cut(s) 770, 847, 956, 1052, 1164, 1363
BsmAI GTCTC 2 cut(s) 1195, 1333
BsmFI GGGAC 2 cut(s) 47, 1288
BsmI GAATGC 1 cut(s) 883
BsnI GGCC 3 cut(s) 690, 1237, 1387
BsoBI CYCGRG 1 cut(s) 871
Bsp120I GGGCCC 1 cut(s) 1385
Bsp1286I GDGCHC 4 cut(s) 778, 1058, 1141, 1389
Bsp1407I TGTACA 1 cut(s) 810
Bsp143I GATC 6 cut(s) 344, 565, 739, 784, 1098, 1366
Bsp1720I GCTNAGC 1 cut(s) 392
Bsp19I CCATGG 1 cut(s) 685
BspACI CCGC 2 cut(s) 412, 528
BspANI GGCC 3 cut(s) 690, 1237, 1387
BspCNI CTCAG 1 cut(s) 405
BspHI TCATGA 1 cut(s) 358
BspLI GGNNCC 4 cut(s) 683, 1084, 1386, 1387
BspMI ACCTGC 1 cut(s) 669
BspPI GGATC 2 cut(s) 352, 1374
BspT107I GGYRCC 1 cut(s) 1082
BsrDI GCAATG 3 cut(s) 386, 677, 1257
BsrGI TGTACA 1 cut(s) 810
BsrI ACTGG 4 cut(s) 41, 107, 1158, 1289
BssECI CCNNGG 6 cut(s) 152, 340, 685, 1050, 1232, 1258
BssMI GATC 6 cut(s) 344, 565, 739, 784, 1098, 1366
BssNI GRCGYC 2 cut(s) 730, 754
BssT1I CCWWGG 4 cut(s) 340, 685, 1050, 1258
Bst2UI CCWGG 3 cut(s) 153, 771, 1112
Bst4CI ACNGT 3 cut(s) 810, 815, 1214
Bst6I CTCTTC 3 cut(s) 707, 1083, 1152
BstACI GRCGYC 2 cut(s) 730, 754
BstAUI TGTACA 1 cut(s) 810
BstC8I GCNNGC 4 cut(s) 373, 668, 728, 1248
BstDEI CTNAG 3 cut(s) 190, 392, 450
BstDSI CCRYGG 1 cut(s) 685
BstENI CCTNNNNNAGG 1 cut(s) 954
BstF5I GGATG 5 cut(s) 19, 420, 904, 1046, 1120
BstHHI GCGC 1 cut(s) 905
BstKTI GATC 6 cut(s) 347, 568, 742, 787, 1101, 1369
BstMAI GTCTC 2 cut(s) 1195, 1333
BstMBI GATC 6 cut(s) 344, 565, 739, 784, 1098, 1366
BstMWI GCNNNNNNNGC 4 cut(s) 329, 409, 909, 1243
BstNI CCWGG 3 cut(s) 153, 771, 1112
BstNSI RCATGY 2 cut(s) 909, 1231
BstSCI CCNGG 4 cut(s) 151, 769, 1110, 1232
BstSLI GKGCMC 2 cut(s) 1058, 1389
BstV1I GCAGC 4 cut(s) 517, 527, 542, 1362
BstX2I RGATCY 2 cut(s) 344, 1366
BstXI CCANNNNNNTGG 2 cut(s) 102, 484
BstYI RGATCY 2 cut(s) 344, 1366
BsuRI GGCC 3 cut(s) 690, 1237, 1387
BtgI CCRYGG 1 cut(s) 685
BtgZI GCGATG 1 cut(s) 575
BtsCI GGATG 5 cut(s) 19, 420, 904, 1046, 1120
BtsI GCAGTG 2 cut(s) 764, 776
BtsIMutI CAGTG 3 cut(s) 764, 776, 806
BveI ACCTGC 1 cut(s) 669
Cac8I GCNNGC 4 cut(s) 373, 668, 728, 1248
CaiI CAGNNNCTG 1 cut(s) 227
CciI TCATGA 1 cut(s) 358
CfoI GCGC 1 cut(s) 905
Cfr13I GGNCC 3 cut(s) 850, 1385, 1386
CseI GACGC 2 cut(s) 719, 743
Csp6I GTAC 5 cut(s) 201, 418, 525, 811, 816
CviAII CATG 9 cut(s) 52, 359, 686, 835, 861, 894, 906, 1173, 1228
CviQI GTAC 5 cut(s) 201, 418, 525, 811, 816
DdeI CTNAG 3 cut(s) 190, 392, 450
DpnI GATC 6 cut(s) 346, 567, 741, 786, 1100, 1368
DpnII GATC 6 cut(s) 344, 565, 739, 784, 1098, 1366
Eam1104I CTCTTC 3 cut(s) 707, 1083, 1152
EarI CTCTTC 3 cut(s) 707, 1083, 1152
Eco130I CCWWGG 4 cut(s) 340, 685, 1050, 1258
Eco24I GRGCYC 1 cut(s) 1389
Eco47I GGWCC 1 cut(s) 850
Eco57I CTGAAG 4 cut(s) 222, 250, 354, 898
Eco88I CYCGRG 1 cut(s) 871
EcoNI CCTNNNNNAGG 1 cut(s) 954
EcoO109I RGGNCCY 2 cut(s) 1385, 1386
EcoRI GAATTC 1 cut(s) 232
EcoRII CCWGG 3 cut(s) 151, 769, 1110
EcoT14I CCWWGG 4 cut(s) 340, 685, 1050, 1258
EcoT38I GRGCYC 1 cut(s) 1389
ErhI CCWWGG 4 cut(s) 340, 685, 1050, 1258
FaeI CATG 9 cut(s) 55, 362, 689, 838, 864, 897, 909, 1176, 1231
FaqI GGGAC 2 cut(s) 47, 1288
FatI CATG 9 cut(s) 51, 358, 685, 834, 860, 893, 905, 1172, 1227
Fnu4HI GCNGC 4 cut(s) 531, 541, 556, 1351
FokI GGATG 5 cut(s) 6, 427, 911, 1033, 1127
FriOI GRGCYC 1 cut(s) 1389
Fsp4HI GCNGC 4 cut(s) 531, 541, 556, 1351
FspBI CTAG 2 cut(s) 324, 1032
GlaI GCGC 1 cut(s) 904
GluI GCNGC 4 cut(s) 531, 541, 556, 1351
GsuI CTGGAG 1 cut(s) 124
HaeIII GGCC 3 cut(s) 690, 1237, 1387
HapII CCGG 1 cut(s) 1234
HgaI GACGC 2 cut(s) 719, 743
HhaI GCGC 1 cut(s) 905
Hin1I GRCGYC 2 cut(s) 730, 754
Hin1II CATG 9 cut(s) 55, 362, 689, 838, 864, 897, 909, 1176, 1231
Hin6I GCGC 1 cut(s) 903
HinP1I GCGC 1 cut(s) 903
HincII GTYRAC 2 cut(s) 921, 1155
HindII GTYRAC 2 cut(s) 921, 1155
HindIII AAGCTT 2 cut(s) 86, 401
HinfI GANTC 4 cut(s) 137, 1028, 1091, 1126
HpaII CCGG 1 cut(s) 1234
HphI GGTGA 3 cut(s) 170, 392, 618
Hpy166II GTNNAC 3 cut(s) 868, 921, 1155
Hpy188I TCNGA 6 cut(s) 81, 136, 187, 697, 739, 1279
Hpy188III TCNNGA 4 cut(s) 359, 969, 1025, 1364
Hpy8I GTNNAC 3 cut(s) 868, 921, 1155
Hpy99I CGWCG 2 cut(s) 660, 759
HpyAV CCTTC 4 cut(s) 33, 107, 278, 545
HpyCH4III ACNGT 3 cut(s) 810, 815, 1214
HpyCH4IV ACGT 2 cut(s) 655, 998
HpyCH4V TGCA 6 cut(s) 437, 558, 611, 953, 1118, 1246
HpyF10VI GCNNNNNNNGC 4 cut(s) 329, 409, 909, 1243
HpyF3I CTNAG 3 cut(s) 190, 392, 450
HpySE526I ACGT 2 cut(s) 655, 998
Hsp92I GRCGYC 2 cut(s) 730, 754
Hsp92II CATG 9 cut(s) 55, 362, 689, 838, 864, 897, 909, 1176, 1231
HspAI GCGC 1 cut(s) 903
Kzo9I GATC 6 cut(s) 344, 565, 739, 784, 1098, 1366
LmnI GCTCC 2 cut(s) 59, 773
Lsp1109I GCAGC 4 cut(s) 517, 527, 542, 1362
LweI GCATC 4 cut(s) 28, 1070, 1105, 1233
MaeI CTAG 2 cut(s) 324, 1032
MaeII ACGT 2 cut(s) 655, 998
MaeIII GTNAC 2 cut(s) 67, 1343
MalI GATC 6 cut(s) 346, 567, 741, 786, 1100, 1368
MboI GATC 6 cut(s) 344, 565, 739, 784, 1098, 1366
MboII GAAGA 8 cut(s) 94, 228, 339, 437, 724, 1100, 1139, 1361
MflI RGATCY 2 cut(s) 344, 1366
MhlI GDGCHC 4 cut(s) 778, 1058, 1141, 1389
MluCI AATT 6 cut(s) 232, 698, 886, 979, 1415, 1420
MlyI GAGTC 1 cut(s) 1100
MmeI TCCRAC 1 cut(s) 285
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 5 cut(s) 507, 642, 1010, 1131, 1423
MslI CAYNNNNRTG 1 cut(s) 482
MspA1I CMGCKG 2 cut(s) 371, 530
MspI CCGG 1 cut(s) 1234
MspR9I CCNGG 4 cut(s) 153, 771, 1112, 1234
Mva1269I GAATGC 1 cut(s) 883
MvaI CCWGG 3 cut(s) 153, 771, 1112
MwoI GCNNNNNNNGC 4 cut(s) 329, 409, 909, 1243
NciI CCSGG 1 cut(s) 1234
NcoI CCATGG 1 cut(s) 685
NdeII GATC 6 cut(s) 344, 565, 739, 784, 1098, 1366
NlaIII CATG 9 cut(s) 55, 362, 689, 838, 864, 897, 909, 1176, 1231
NlaIV GGNNCC 4 cut(s) 683, 1084, 1386, 1387
NspI RCATGY 2 cut(s) 909, 1231
PaeR7I CTCGAG 1 cut(s) 871
PagI TCATGA 1 cut(s) 358
PctI GAATGC 1 cut(s) 883
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 3 cut(s) 137, 1028, 1126
PflMI CCANNNNNTGG 1 cut(s) 1164
PkrI GCNGC 4 cut(s) 532, 542, 557, 1352
PleI GAGTC 1 cut(s) 1099
PpsI GAGTC 1 cut(s) 1099
Psp6I CCWGG 3 cut(s) 151, 769, 1110
PspGI CCWGG 3 cut(s) 151, 769, 1110
PspN4I GGNNCC 4 cut(s) 683, 1084, 1386, 1387
PspOMI GGGCCC 1 cut(s) 1385
PspPI GGNCC 3 cut(s) 850, 1385, 1386
PspXI VCTCGAGB 1 cut(s) 871
PstNI CAGNNNCTG 1 cut(s) 227
PsuI RGATCY 2 cut(s) 344, 1366
PvuII CAGCTG 1 cut(s) 371
RsaI GTAC 5 cut(s) 202, 419, 526, 812, 817
RsaNI GTAC 5 cut(s) 201, 418, 525, 811, 816
RseI CAYNNNNRTG 1 cut(s) 482
SaqAI TTAA 5 cut(s) 507, 642, 1010, 1131, 1423
SatI GCNGC 4 cut(s) 531, 541, 556, 1351
Sau3AI GATC 6 cut(s) 344, 565, 739, 784, 1098, 1366
Sau96I GGNCC 3 cut(s) 850, 1385, 1386
SchI GAGTC 1 cut(s) 1100
ScrFI CCNGG 4 cut(s) 153, 771, 1112, 1234
SduI GDGCHC 4 cut(s) 778, 1058, 1141, 1389
SfaNI GCATC 4 cut(s) 28, 1070, 1105, 1233
Sfr274I CTCGAG 1 cut(s) 871
SinI GGWCC 1 cut(s) 850
SlaI CTCGAG 1 cut(s) 871
SmiMI CAYNNNNRTG 1 cut(s) 482
SmlI CTYRAG 2 cut(s) 272, 871
SmoI CTYRAG 2 cut(s) 272, 871
Sse9I AATT 6 cut(s) 232, 698, 886, 979, 1415, 1420
SsiI CCGC 2 cut(s) 412, 528
SspI AATATT 1 cut(s) 562
SspMI CTAG 2 cut(s) 324, 1032
StyD4I CCNGG 4 cut(s) 151, 769, 1110, 1232
StyI CCWWGG 4 cut(s) 340, 685, 1050, 1258
TaaI ACNGT 3 cut(s) 810, 815, 1214
TaiI ACGT 2 cut(s) 658, 1001
TaqI TCGA 4 cut(s) 787, 872, 1078, 1308
TasI AATT 6 cut(s) 232, 698, 886, 979, 1415, 1420
TatI WGTACW 3 cut(s) 417, 810, 815
TfiI GAWTC 3 cut(s) 137, 1028, 1126
Tru1I TTAA 5 cut(s) 507, 642, 1010, 1131, 1423
Tru9I TTAA 5 cut(s) 507, 642, 1010, 1131, 1423
TscAI CASTG 3 cut(s) 771, 783, 813
TseI GCWGC 4 cut(s) 530, 540, 555, 1350
TspDTI ATGAA 7 cut(s) 40, 143, 720, 1161, 1268, 1308, 1361
TspRI CASTG 3 cut(s) 771, 783, 813
Van91I CCANNNNNTGG 1 cut(s) 1164
VpaK11BI GGWCC 1 cut(s) 850
XagI CCTNNNNNAGG 1 cut(s) 954
XapI RAATTY 4 cut(s) 232, 698, 886, 979
XceI RCATGY 2 cut(s) 909, 1231
XhoI CTCGAG 1 cut(s) 871
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 2 cut(s) 324, 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.