Rmu_ssc0000150.1_g000023

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000150.1
Physical Location & Seq
Reverse (-)
117249 .. 120444
3196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000150.1_g000023.1.cds

Sequence Viewer

Length: 1857 bp
atgattcaatactgttccttgtactcgtattcaggatttgctttgcttcagagcccggattttgttgataaaaaacaatcagctagagaagctgaagcccttggatcttcgccaactcatgagatttcagctggctctggtgagccattgctcagcctaaagcttggtaagcggatgtactttgaagatgtttgtgcaggaaataatgctaagacctctgctgtttctgttatatccacaccaatgggaacaaaagcaaagagatttaagtccattggtcaaagtacagctgctactcgctgccaagttgaaggctgcaatattgatctctcatcagcgaaagattaccatcgcaaacataggatttgtgcaaatcattccaaatcaccaaaggtcgttgttaatggtgtggaacgtcggttttgccagcaatgtagcaggttccatggcctttctgaatttgatgaaaagaagagaagctgtcgcaggcgtctttcagatcacaacgcaaggcgtcgcaaaccactgccaggagcactgcgagatcaagcgaggctgtcctcatcactgtacagtacagatgggaggcaagacatgagccttgttttggaccaagccccatgtgtctactcgaggaatgctacaaatttatcatgggatggcgcatgtagcttcaggttgacaccaacaaaagattattttccaaatcctgcaaaaggaggaggcacttccagacagctaaatttggctgaaaatcgaacttcaagttccttagcaatgctttatcaagattctagtaggttgccaccatctaagggcacagcatcacaagttctaaatcgaggtgccgaagaatctatgatctctttcaacctggatgcaccgcagaatcttaatcgtgctctctctcttctgtcaaccagttcgtgggcttcatgcgaggcaaaacctgtttcacttgataataccaatcacagttatcataccaacatgcctcggcctgtgatgcaggcaatgaaccaaggcttgccattgtcgtcagaatactggcaaaatgaacagccatccctcgacaccacccaagtgaatgtttcgcattcacagagtaatggcagcaaccaatatcaggatcttcatttgttcaaggggccctatgaaatctcacctttcttaaggaacctcgaaactgctttggttaccccgtcttgctctaatcgcatggaagaattcggtggattcagattgcgaatgctcgactcgtctgggaaatcccttgttaacctctttctaagaatgctcgactcgtctgggaaatcccttgttaacctctttctaagaatgctcgactcgtctgggaaatcccttgttaacctctttctaagaatgctcgactcgtctgggaaatcccttgttaacctctttctaagaatgctcgactcgtctgggaaatcccttgttaacctctttctaagaatgctcgactcgtctgggaaatcccttgttaacctctttctaagaatgctcgactcgtctgggaaatcccttgttaacctctttctaagaatgctcgactcgtctgggaaatcccttgttaacctctttctaagaatgctcgactcgtctgggaaatcccttgttaacctctttctaagaatgctcgactcgtctgggaaatcccttgttaacctctttctaagaatgctcgactcgtctgggaaatcccttgttaacctctttctaagaatgctcgactcgtctgggaaatcccttgttaacctctttctaagaatgctcgactcatggagacccaacccattaatggctgccaccaactggtccactcgcgttggacgctaa

Protein Analysis

618

Amino Acids

68.59

Weight (kDa)

9.76

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 429
AccB1I GGYRCC 1 cut(s) 845
AccB7I CCANNNNNTGG 2 cut(s) 927, 1833
AccI GTMKAC 1 cut(s) 627
AccII CGCG 1 cut(s) 1845
AciI CCGC 2 cut(s) 172, 884
AclWI GGATC 2 cut(s) 112, 1137
AcsI RAATTY 4 cut(s) 458, 646, 742, 1226
AcuI CTGAAG 3 cut(s) 32, 114, 658
AcyI GRCGYC 2 cut(s) 490, 514
AfaI GTAC 5 cut(s) 23, 179, 286, 572, 577
AfiI CCNNNNNNNGG 8 cut(s) 530, 607, 716, 815, 927, 1126, 1819, 1833
AflII CTTAAG 1 cut(s) 1171
AgsI TTSAA 6 cut(s) 8, 185, 311, 765, 871, 1144
AjnI CCWGG 2 cut(s) 529, 873
AleI CACNNNNGTG 1 cut(s) 1082
AluBI AGCT 8 cut(s) 83, 92, 131, 163, 290, 480, 672, 739
AluI AGCT 8 cut(s) 83, 92, 131, 163, 290, 480, 672, 739
Alw21I GWGCWC 2 cut(s) 538, 904
Alw26I GTCTC 1 cut(s) 1798
AlwI GGATC 2 cut(s) 112, 1137
Ama87I CYCGRG 1 cut(s) 631
AoxI GGCC 3 cut(s) 448, 998, 1148
ApaI GGGCCC 1 cut(s) 1152
ApeKI GCWGC 5 cut(s) 290, 300, 315, 1113, 1823
ApoI RAATTY 4 cut(s) 458, 646, 742, 1226
AseI ATTAAT 1 cut(s) 1817
AspLEI GCGC 1 cut(s) 665
AspS9I GGNCC 4 cut(s) 610, 1148, 1149, 1836
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 3 cut(s) 152, 378, 1155
AvaI CYCGRG 1 cut(s) 631
AvaII GGWCC 2 cut(s) 610, 1836
BaeGI GKGCMC 2 cut(s) 821, 1152
BanI GGYRCC 1 cut(s) 845
BanII GRGCYC 2 cut(s) 56, 1152
Bbv12I GWGCWC 2 cut(s) 538, 904
BbvI GCAGC 5 cut(s) 277, 287, 302, 1125, 1810
BccI CCATC 5 cut(s) 357, 575, 653, 817, 1072
BciT130I CCWGG 2 cut(s) 531, 875
BcnI CCSGG 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 1798
BfaI CTAG 2 cut(s) 84, 795
BfrI CTTAAG 1 cut(s) 1171
BfuAI ACCTGC 1 cut(s) 429
BisI GCNGC 5 cut(s) 291, 301, 316, 1114, 1824
BlpI GCTNAGC 1 cut(s) 152
BlsI GCNGC 5 cut(s) 292, 302, 317, 1115, 1825
Bme1390I CCNGG 3 cut(s) 56, 531, 875
Bme18I GGWCC 2 cut(s) 610, 1836
BmeT110I CYCGRG 1 cut(s) 631
BmgT120I GGNCC 4 cut(s) 610, 1148, 1149, 1836
BmiI GGNNCC 5 cut(s) 443, 847, 1149, 1150, 1178
BmrFI CCNGG 3 cut(s) 56, 531, 875
BmsI GCATC 3 cut(s) 833, 868, 996
Bpu10I CCTNAGC 1 cut(s) 772
Bpu1102I GCTNAGC 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 348
BsaHI GRCGYC 2 cut(s) 490, 514
BsaI GGTCTC 1 cut(s) 1798
BsaJI CCNNGG 4 cut(s) 100, 445, 995, 1021
Bsc4I CCNNNNNNNGG 8 cut(s) 530, 607, 716, 815, 927, 1126, 1819, 1833
Bse1I ACTGG 3 cut(s) 921, 1052, 1838
Bse3DI GCAATG 4 cut(s) 146, 437, 783, 1020
Bse8I GATNNNNATC 1 cut(s) 348
BseBI CCWGG 2 cut(s) 531, 875
BseDI CCNNGG 4 cut(s) 100, 445, 995, 1021
BseGI GGATG 4 cut(s) 180, 664, 883, 1064
BseJI GATNNNNATC 1 cut(s) 348
BseLI CCNNNNNNNGG 8 cut(s) 530, 607, 716, 815, 927, 1126, 1819, 1833
BseMI GCAATG 4 cut(s) 146, 437, 783, 1020
BseMII CTCAG 1 cut(s) 166
BseNI ACTGG 3 cut(s) 921, 1052, 1838
BseRI GAGGAG 1 cut(s) 735
BseSI GKGCMC 2 cut(s) 821, 1152
BseXI GCAGC 5 cut(s) 277, 287, 302, 1125, 1810
BsgI GTGCAG 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 1845
BshFI GGCC 3 cut(s) 450, 1000, 1150
BshNI GGYRCC 1 cut(s) 845
BsiHKAI GWGCWC 2 cut(s) 538, 904
BsiHKCI CYCGRG 1 cut(s) 631
BsiSI CCGG 1 cut(s) 56
BslI CCNNNNNNNGG 8 cut(s) 530, 607, 716, 815, 927, 1126, 1819, 1833
BsmAI GTCTC 1 cut(s) 1798
BsnI GGCC 3 cut(s) 450, 1000, 1150
Bso31I GGTCTC 1 cut(s) 1798
BsoBI CYCGRG 1 cut(s) 631
Bsp120I GGGCCC 1 cut(s) 1148
Bsp1286I GDGCHC 5 cut(s) 56, 538, 821, 904, 1152
Bsp1407I TGTACA 1 cut(s) 570
Bsp143I GATC 6 cut(s) 104, 325, 499, 544, 861, 1129
Bsp1720I GCTNAGC 1 cut(s) 152
Bsp19I CCATGG 1 cut(s) 445
BspACI CCGC 2 cut(s) 172, 884
BspANI GGCC 3 cut(s) 450, 1000, 1150
BspCNI CTCAG 1 cut(s) 165
BspFNI CGCG 1 cut(s) 1845
BspHI TCATGA 1 cut(s) 118
BspLI GGNNCC 5 cut(s) 443, 847, 1149, 1150, 1178
BspMI ACCTGC 1 cut(s) 429
BspPI GGATC 2 cut(s) 112, 1137
BspT107I GGYRCC 1 cut(s) 845
BspTI CTTAAG 1 cut(s) 1171
BspTNI GGTCTC 1 cut(s) 1798
BsrDI GCAATG 4 cut(s) 146, 437, 783, 1020
BsrGI TGTACA 1 cut(s) 570
BsrI ACTGG 3 cut(s) 921, 1052, 1838
BssECI CCNNGG 4 cut(s) 100, 445, 995, 1021
BssMI GATC 6 cut(s) 104, 325, 499, 544, 861, 1129
BssNI GRCGYC 2 cut(s) 490, 514
BssT1I CCWWGG 3 cut(s) 100, 445, 1021
Bst2UI CCWGG 2 cut(s) 531, 875
Bst4CI ACNGT 4 cut(s) 14, 570, 575, 977
Bst6I CTCTTC 2 cut(s) 467, 915
BstACI GRCGYC 2 cut(s) 490, 514
BstAFI CTTAAG 1 cut(s) 1171
BstAUI TGTACA 1 cut(s) 570
BstC8I GCNNGC 5 cut(s) 133, 428, 488, 1011, 1028
BstDSI CCRYGG 1 cut(s) 445
BstEII GGTNACC 1 cut(s) 1195
BstENI CCTNNNNNAGG 1 cut(s) 714
BstF5I GGATG 4 cut(s) 180, 664, 883, 1064
BstFNI CGCG 1 cut(s) 1845
BstHHI GCGC 1 cut(s) 665
BstKTI GATC 6 cut(s) 107, 328, 502, 547, 864, 1132
BstMAI GTCTC 1 cut(s) 1798
BstMBI GATC 6 cut(s) 104, 325, 499, 544, 861, 1129
BstMWI GCNNNNNNNGC 6 cut(s) 89, 169, 669, 1006, 1215, 1851
BstNI CCWGG 2 cut(s) 531, 875
BstNSI RCATGY 2 cut(s) 669, 994
BstPI GGTNACC 1 cut(s) 1195
BstSCI CCNGG 3 cut(s) 54, 529, 873
BstSLI GKGCMC 2 cut(s) 821, 1152
BstUI CGCG 1 cut(s) 1845
BstV1I GCAGC 5 cut(s) 277, 287, 302, 1125, 1810
BstX2I RGATCY 2 cut(s) 104, 1129
BstXI CCANNNNNNTGG 1 cut(s) 244
BstYI RGATCY 2 cut(s) 104, 1129
BsuRI GGCC 3 cut(s) 450, 1000, 1150
BtgI CCRYGG 1 cut(s) 445
BtgZI GCGATG 1 cut(s) 335
BtsCI GGATG 4 cut(s) 180, 664, 883, 1064
BtsI GCAGTG 2 cut(s) 524, 536
BtsIMutI CAGTG 3 cut(s) 524, 536, 566
BveI ACCTGC 1 cut(s) 429
Cac8I GCNNGC 5 cut(s) 133, 428, 488, 1011, 1028
CciI TCATGA 1 cut(s) 118
CfoI GCGC 1 cut(s) 665
Cfr13I GGNCC 4 cut(s) 610, 1148, 1149, 1836
CseI GACGC 2 cut(s) 479, 503
Csp6I GTAC 5 cut(s) 22, 178, 285, 571, 576
CspCI CAANNNNNGTGG 1 cut(s) 1828
CviQI GTAC 5 cut(s) 22, 178, 285, 571, 576
DpnI GATC 6 cut(s) 106, 327, 501, 546, 863, 1131
DpnII GATC 6 cut(s) 104, 325, 499, 544, 861, 1129
Eam1104I CTCTTC 2 cut(s) 467, 915
EarI CTCTTC 2 cut(s) 467, 915
Eco130I CCWWGG 3 cut(s) 100, 445, 1021
Eco24I GRGCYC 2 cut(s) 56, 1152
Eco31I GGTCTC 1 cut(s) 1798
Eco47I GGWCC 2 cut(s) 610, 1836
Eco57I CTGAAG 3 cut(s) 32, 114, 658
Eco88I CYCGRG 1 cut(s) 631
Eco91I GGTNACC 1 cut(s) 1195
EcoNI CCTNNNNNAGG 1 cut(s) 714
EcoO109I RGGNCCY 2 cut(s) 1148, 1149
EcoO65I GGTNACC 1 cut(s) 1195
EcoRI GAATTC 1 cut(s) 1226
EcoRII CCWGG 2 cut(s) 529, 873
EcoT14I CCWWGG 3 cut(s) 100, 445, 1021
EcoT38I GRGCYC 2 cut(s) 56, 1152
ErhI CCWWGG 3 cut(s) 100, 445, 1021
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 5 cut(s) 291, 301, 316, 1114, 1824
FokI GGATG 4 cut(s) 187, 671, 890, 1051
FriOI GRGCYC 2 cut(s) 56, 1152
Fsp4HI GCNGC 5 cut(s) 291, 301, 316, 1114, 1824
FspBI CTAG 2 cut(s) 84, 795
GlaI GCGC 1 cut(s) 664
GluI GCNGC 5 cut(s) 291, 301, 316, 1114, 1824
HaeIII GGCC 3 cut(s) 450, 1000, 1150
HapII CCGG 1 cut(s) 56
HgaI GACGC 2 cut(s) 479, 503
HhaI GCGC 1 cut(s) 665
Hin1I GRCGYC 2 cut(s) 490, 514
Hin6I GCGC 1 cut(s) 663
HinP1I GCGC 1 cut(s) 663
HindIII AAGCTT 1 cut(s) 161
HpaII CCGG 1 cut(s) 56
HphI GGTGA 3 cut(s) 152, 378, 1155
Hpy188I TCNGA 5 cut(s) 51, 457, 499, 1042, 1241
Hpy188III TCNNGA 5 cut(s) 33, 119, 732, 788, 1127
Hpy99I CGWCG 2 cut(s) 420, 519
HpyAV CCTTC 1 cut(s) 305
HpyCH4III ACNGT 4 cut(s) 14, 570, 575, 977
HpyCH4IV ACGT 1 cut(s) 415
HpyCH4V TGCA 6 cut(s) 197, 318, 371, 713, 881, 1009
HpyF10VI GCNNNNNNNGC 6 cut(s) 89, 169, 669, 1006, 1215, 1851
HpySE526I ACGT 1 cut(s) 415
Hsp92I GRCGYC 2 cut(s) 490, 514
HspAI GCGC 1 cut(s) 663
Kzo9I GATC 6 cut(s) 104, 325, 499, 544, 861, 1129
LmnI GCTCC 1 cut(s) 533
Lsp1109I GCAGC 5 cut(s) 277, 287, 302, 1125, 1810
LweI GCATC 3 cut(s) 833, 868, 996
MaeI CTAG 2 cut(s) 84, 795
MaeII ACGT 1 cut(s) 415
MaeIII GTNAC 1 cut(s) 1195
MalI GATC 6 cut(s) 106, 327, 501, 546, 863, 1131
MboI GATC 6 cut(s) 104, 325, 499, 544, 861, 1129
MboII GAAGA 7 cut(s) 99, 197, 484, 863, 902, 1124, 1235
MflI RGATCY 2 cut(s) 104, 1129
MhlI GDGCHC 5 cut(s) 56, 538, 821, 904, 1152
MluCI AATT 4 cut(s) 458, 646, 742, 1226
MmeI TCCRAC 1 cut(s) 1828
MslI CAYNNNNRTG 2 cut(s) 242, 1082
MspA1I CMGCKG 2 cut(s) 131, 290
MspCI CTTAAG 1 cut(s) 1171
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 3 cut(s) 56, 531, 875
MvaI CCWGG 2 cut(s) 531, 875
MvnI CGCG 1 cut(s) 1845
MwoI GCNNNNNNNGC 6 cut(s) 89, 169, 669, 1006, 1215, 1851
NciI CCSGG 1 cut(s) 56
NcoI CCATGG 1 cut(s) 445
NdeII GATC 6 cut(s) 104, 325, 499, 544, 861, 1129
NlaIV GGNNCC 5 cut(s) 443, 847, 1149, 1150, 1178
NmeAIII GCCGAG 1 cut(s) 976
NspI RCATGY 2 cut(s) 669, 994
OliI CACNNNNGTG 1 cut(s) 1082
PaeR7I CTCGAG 1 cut(s) 631
PagI TCATGA 1 cut(s) 118
PfeI GAWTC 5 cut(s) 4, 791, 854, 889, 1236
PflMI CCANNNNNTGG 2 cut(s) 927, 1833
PkrI GCNGC 5 cut(s) 292, 302, 317, 1115, 1825
PshBI ATTAAT 1 cut(s) 1817
Psp6I CCWGG 2 cut(s) 529, 873
PspEI GGTNACC 1 cut(s) 1195
PspGI CCWGG 2 cut(s) 529, 873
PspN4I GGNNCC 5 cut(s) 443, 847, 1149, 1150, 1178
PspOMI GGGCCC 1 cut(s) 1148
PspPI GGNCC 4 cut(s) 610, 1148, 1149, 1836
PspXI VCTCGAGB 1 cut(s) 631
PsuI RGATCY 2 cut(s) 104, 1129
PvuII CAGCTG 2 cut(s) 131, 290
RsaI GTAC 5 cut(s) 23, 179, 286, 572, 577
RsaNI GTAC 5 cut(s) 22, 178, 285, 571, 576
RseI CAYNNNNRTG 2 cut(s) 242, 1082
SatI GCNGC 5 cut(s) 291, 301, 316, 1114, 1824
Sau3AI GATC 6 cut(s) 104, 325, 499, 544, 861, 1129
Sau96I GGNCC 4 cut(s) 610, 1148, 1149, 1836
ScrFI CCNGG 3 cut(s) 56, 531, 875
SduI GDGCHC 5 cut(s) 56, 538, 821, 904, 1152
SfaNI GCATC 3 cut(s) 833, 868, 996
Sfr274I CTCGAG 1 cut(s) 631
SinI GGWCC 2 cut(s) 610, 1836
SlaI CTCGAG 1 cut(s) 631
SmiMI CAYNNNNRTG 2 cut(s) 242, 1082
SmlI CTYRAG 2 cut(s) 631, 1171
SmoI CTYRAG 2 cut(s) 631, 1171
Sse9I AATT 4 cut(s) 458, 646, 742, 1226
SsiI CCGC 2 cut(s) 172, 884
SspI AATATT 1 cut(s) 322
SspMI CTAG 2 cut(s) 84, 795
StyD4I CCNGG 3 cut(s) 54, 529, 873
StyI CCWWGG 3 cut(s) 100, 445, 1021
TaaI ACNGT 4 cut(s) 14, 570, 575, 977
TaiI ACGT 1 cut(s) 418
TasI AATT 4 cut(s) 458, 646, 742, 1226
TatI WGTACW 5 cut(s) 21, 177, 284, 570, 575
TfiI GAWTC 5 cut(s) 4, 791, 854, 889, 1236
TscAI CASTG 3 cut(s) 531, 543, 573
TseI GCWGC 5 cut(s) 290, 300, 315, 1113, 1823
TspDTI ATGAA 6 cut(s) 480, 924, 1031, 1071, 1124, 1170
TspRI CASTG 3 cut(s) 531, 543, 573
Van91I CCANNNNNTGG 2 cut(s) 927, 1833
Vha464I CTTAAG 1 cut(s) 1171
VpaK11BI GGWCC 2 cut(s) 610, 1836
VspI ATTAAT 1 cut(s) 1817
XagI CCTNNNNNAGG 1 cut(s) 714
XapI RAATTY 4 cut(s) 458, 646, 742, 1226
XceI RCATGY 2 cut(s) 669, 994
XcmI CCANNNNNNNNNTGG 1 cut(s) 1816
XhoI CTCGAG 1 cut(s) 631
XmiI GTMKAC 1 cut(s) 627
XspI CTAG 2 cut(s) 84, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.