pycom13g10470

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
7007115 .. 7009246
2132 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g10470.3

Sequence Viewer

Length: 1389 bp
ATGAATTCGGTGCTGATGATGGAGTGGAATGAAAAACCTCCTTCACCATGGGATTTGGAGAACCTTTTCATGTATGGTGCAAAAGTTACTGAAAATCCTAAGAAATTACAACCAGCAGACTGGGGCATTGAAAGGGAACGAGGATTGAACTCTGAATCTTTGTATTCGACTGGGGGTGATGGGGGTAGTGGTGTTTCCGGCTCTGATTTTGGAGATGGTTCATCAAAGTGTTCGAAATCAGCTTCTGTCAATTCTTCGGTCGGGGAAAGTAAGAAATCCAATTTCAACTTTGAGTCTTCTGAAGGTTTCCCAAAGGATTTCTTTGATAAAAAGGATTCAGCTGAAGCTGAGGCCCTTGGATCGTCTCCAACTCATGAGGTTTCGGCTGGCTCTGGCGAGCCCTTGCTCAGTCTAAAGCTTGGTAAGCGGATGTACTTCGAAGACGTTTGTGCAGGAAATAATCATGAGACCTCTTCTCTTTCTGTTATTTCCACATCAATACCGACAAGGACAAAGAGGTATAAGTCCCCTGCTCAGAGTGCGTTTGCATCACACTGCCAAGTTGAAGGCTGCAATCTTGATCTTTCATCAGTCAAAGATTACCATCGCAAACATAGGATTTGTGCAAATCATTCCAAATCTCCGAAGGTTGTTGTAGATGGTGTGGAACGCCGGTTTTGCCAGCAGTGTAGCAGGCGACTTTCTGATCACAATGCAAGGCGCCGCAAGCCACAGACAGAAGTAGCGAGACACCCAGCGAGGCTGTCTTCATCACTGTTCATTACAGATGACAGGCAACAGATGAGCCTTGCTTTTGACCAAGGTCCATATGTTTACACAAAGCATGCTTCAAATTTAACATGGGATGGCTCGTGCAATCTCAAGTTCGCACAAACGAAAGATTATTTTCCAAATCCTGCAAAAGCAGGAGGCAATGCCAGGCAGCTAAATTTTGCCAACAATGAAACTCCAGGCTCGATAACCATGCTTTATCAGGATTCCAGTAGGCTGTCACCATCTGAGAACACTGCGGCTGAGGTTCTCAACCAAGGTGCTGAAGAATCTATGATTTCCTTCAACCTGGATGCAACACGGGATATTCATCGTGCTCTCTCTCTTCTGTCAACAAGTCCTTGGGTTTCAGGCGAGTCGAAACCTGTTCCATTTGATACCAACCAAAGCTATCATAACAACTTGCCTCAACAGGGGATGCATGCAATGACTCAAGGTGTGCCGGTCTCTTCAGAGTACTGGCAAAGTCAGCATCCATCCCTCGATACCCAAGCACATGTCTCCCACTCACACAGTAATGTCAGCAACCACTTTCAGGATCTTCATCAGTTCAAGGCGCCGTATGAGTTTGGCTATCACCCAAACCAATTCAGTTAA

Protein Analysis

463

Amino Acids

51.12

Weight (kDa)

6.55

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 720, 1348
AciI CCGC 3 cut(s) 427, 724, 1031
AclWI GGATC 2 cut(s) 367, 1338
AcsI RAATTY 3 cut(s) 4, 853, 949
AcuI CTGAAG 4 cut(s) 321, 363, 1077, 1227
AcyI GRCGYC 2 cut(s) 721, 1349
AfaI GTAC 2 cut(s) 434, 1250
AfiI CCNNNNNNNGG 2 cut(s) 1205, 1327
AflIII ACRYGT 1 cut(s) 1288
AgsI TTSAA 7 cut(s) 131, 148, 286, 566, 852, 1078, 1345
AjnI CCWGG 3 cut(s) 938, 970, 1080
AluBI AGCT 6 cut(s) 242, 341, 347, 418, 946, 1182
AluI AGCT 6 cut(s) 242, 341, 347, 418, 946, 1182
Alw21I GWGCWC 1 cut(s) 1111
Alw26I GTCTC 5 cut(s) 369, 461, 742, 1243, 1297
AlwI GGATC 2 cut(s) 367, 1338
AlwNI CAGNNNCTG 1 cut(s) 245
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 2 cut(s) 570, 943
ApoI RAATTY 3 cut(s) 4, 853, 949
Asp700I GAANNNNTTC 1 cut(s) 65
AspLEI GCGC 2 cut(s) 723, 1351
AspS9I GGNCC 2 cut(s) 352, 824
AsuHPI GGTGA 4 cut(s) 36, 188, 1005, 1361
AsuII TTCGAA 2 cut(s) 233, 438
AvaII GGWCC 1 cut(s) 824
BanI GGYRCC 2 cut(s) 720, 1348
BanII GRGCYC 1 cut(s) 402
BauI CACGAG 1 cut(s) 871
BbsI GAAGAC 3 cut(s) 288, 447, 759
Bbv12I GWGCWC 1 cut(s) 1111
BbvCI CCTCAGC 2 cut(s) 348, 1035
BbvI GCAGC 2 cut(s) 557, 955
BccI CCATC 8 cut(s) 13, 173, 209, 612, 653, 860, 1024, 1276
BceAI ACGGC 1 cut(s) 1336
BcgI CGANNNNNNTGC 2 cut(s) 967, 1001
BciT130I CCWGG 3 cut(s) 940, 972, 1082
BclI TGATCA 1 cut(s) 706
BcoDI GTCTC 5 cut(s) 369, 461, 742, 1243, 1297
BfoI RGCGCY 2 cut(s) 724, 1352
BisI GCNGC 4 cut(s) 571, 724, 944, 1032
BlsI GCNGC 4 cut(s) 572, 725, 945, 1033
BmcAI AGTACT 1 cut(s) 1250
Bme1390I CCNGG 3 cut(s) 940, 972, 1082
Bme18I GGWCC 1 cut(s) 824
BmgT120I GGNCC 2 cut(s) 352, 824
BmiI GGNNCC 2 cut(s) 722, 1350
BmrFI CCNGG 3 cut(s) 940, 972, 1082
BmrI ACTGGG 2 cut(s) 130, 180
BmsI GCATC 4 cut(s) 557, 1075, 1200, 1273
BmuI ACTGGG 2 cut(s) 130, 180
BoxI GACNNNNGTC 1 cut(s) 822
BpiI GAAGAC 3 cut(s) 288, 447, 759
BpmI CTGGAG 1 cut(s) 954
Bpu10I CCTNAGC 2 cut(s) 348, 1035
Bpu14I TTCGAA 2 cut(s) 233, 438
BpuEI CTTGAG 2 cut(s) 866, 1209
BsaBI GATNNNNATC 3 cut(s) 603, 1101, 1335
BsaHI GRCGYC 2 cut(s) 721, 1349
BsaI GGTCTC 2 cut(s) 461, 1243
BsaJI CCNNGG 5 cut(s) 47, 355, 820, 1048, 1133
Bsc4I CCNNNNNNNGG 2 cut(s) 1205, 1327
Bse118I RCCGGY 2 cut(s) 672, 1234
Bse1I ACTGG 4 cut(s) 125, 175, 1002, 1256
Bse3DI GCAATG 2 cut(s) 940, 1224
Bse8I GATNNNNATC 3 cut(s) 603, 1101, 1335
BseBI CCWGG 3 cut(s) 940, 972, 1082
BseDI CCNNGG 5 cut(s) 47, 355, 820, 1048, 1133
BseGI GGATG 6 cut(s) 435, 871, 1090, 1215, 1264, 1268
BseJI GATNNNNATC 3 cut(s) 603, 1101, 1335
BseLI CCNNNNNNNGG 2 cut(s) 1205, 1327
BseMI GCAATG 2 cut(s) 940, 1224
BseMII CTCAG 5 cut(s) 339, 421, 548, 1011, 1026
BseNI ACTGG 4 cut(s) 125, 175, 1002, 1256
BseXI GCAGC 2 cut(s) 557, 955
BseYI CCCAGC 1 cut(s) 754
BsgI GTGCAG 1 cut(s) 471
Bsh1285I CGRYCG 1 cut(s) 261
BshFI GGCC 1 cut(s) 353
BshNI GGYRCC 2 cut(s) 720, 1348
BsiEI CGRYCG 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 1111
BsiSI CCGG 3 cut(s) 198, 673, 1235
BslFI GGGAC 1 cut(s) 511
BslI CCNNNNNNNGG 2 cut(s) 1205, 1327
BsmAI GTCTC 5 cut(s) 369, 461, 742, 1243, 1297
BsmBI CGTCTC 1 cut(s) 369
BsmFI GGGAC 1 cut(s) 511
BsnI GGCC 1 cut(s) 353
Bso31I GGTCTC 2 cut(s) 461, 1243
Bsp119I TTCGAA 2 cut(s) 233, 438
Bsp1286I GDGCHC 2 cut(s) 402, 1111
Bsp143I GATC 4 cut(s) 359, 580, 706, 1330
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 3 cut(s) 427, 724, 1031
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 5 cut(s) 340, 420, 547, 1012, 1027
BspHI TCATGA 2 cut(s) 373, 463
BspLI GGNNCC 2 cut(s) 722, 1350
BspPI GGATC 2 cut(s) 367, 1338
BspT104I TTCGAA 2 cut(s) 233, 438
BspT107I GGYRCC 2 cut(s) 720, 1348
BspTNI GGTCTC 2 cut(s) 461, 1243
BsrDI GCAATG 2 cut(s) 940, 1224
BsrFI RCCGGY 2 cut(s) 672, 1234
BsrI ACTGG 4 cut(s) 125, 175, 1002, 1256
BssAI RCCGGY 2 cut(s) 672, 1234
BssECI CCNNGG 5 cut(s) 47, 355, 820, 1048, 1133
BssMI GATC 4 cut(s) 359, 580, 706, 1330
BssNI GRCGYC 2 cut(s) 721, 1349
BssSI CACGAG 1 cut(s) 871
BssT1I CCWWGG 5 cut(s) 47, 355, 820, 1048, 1133
Bst2BI CACGAG 1 cut(s) 871
Bst2UI CCWGG 3 cut(s) 940, 972, 1082
Bst4CI ACNGT 2 cut(s) 777, 1307
Bst6I CTCTTC 3 cut(s) 478, 1122, 1246
BstACI GRCGYC 2 cut(s) 721, 1349
BstBI TTCGAA 2 cut(s) 233, 438
BstC8I GCNNGC 7 cut(s) 388, 398, 683, 695, 728, 846, 1215
BstDEI CTNAG 6 cut(s) 99, 348, 407, 534, 1020, 1035
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 6 cut(s) 435, 871, 1090, 1215, 1264, 1268
BstH2I RGCGCY 2 cut(s) 724, 1352
BstHHI GCGC 2 cut(s) 723, 1351
BstKTI GATC 4 cut(s) 362, 583, 709, 1333
BstMAI GTCTC 5 cut(s) 369, 461, 742, 1243, 1297
BstMBI GATC 4 cut(s) 359, 580, 706, 1330
BstMCI CGRYCG 1 cut(s) 261
BstMWI GCNNNNNNNGC 5 cut(s) 424, 539, 678, 727, 1261
BstNI CCWGG 3 cut(s) 940, 972, 1082
BstNSI RCATGY 3 cut(s) 848, 1217, 1292
BstPAI GACNNNNGTC 1 cut(s) 822
BstSCI CCNGG 3 cut(s) 938, 970, 1080
BstV1I GCAGC 2 cut(s) 557, 955
BstV2I GAAGAC 3 cut(s) 288, 447, 759
BstX2I RGATCY 1 cut(s) 1330
BstXI CCANNNNNNTGG 1 cut(s) 120
BstYI RGATCY 1 cut(s) 1330
BsuRI GGCC 1 cut(s) 353
BtgI CCRYGG 1 cut(s) 47
BtgZI GCGATG 1 cut(s) 590
BtsCI GGATG 6 cut(s) 435, 871, 1090, 1215, 1264, 1268
BtsI GCAGTG 3 cut(s) 553, 692, 1026
BtsIMutI CAGTG 4 cut(s) 553, 692, 773, 1026
Cac8I GCNNGC 7 cut(s) 388, 398, 683, 695, 728, 846, 1215
CaiI CAGNNNCTG 1 cut(s) 245
CciI TCATGA 2 cut(s) 373, 463
CfoI GCGC 2 cut(s) 723, 1351
Cfr10I RCCGGY 2 cut(s) 672, 1234
Cfr13I GGNCC 2 cut(s) 352, 824
Csp6I GTAC 2 cut(s) 433, 1249
CviAII CATG 9 cut(s) 48, 70, 374, 464, 845, 861, 985, 1214, 1289
CviQI GTAC 2 cut(s) 433, 1249
DdeI CTNAG 6 cut(s) 99, 348, 407, 534, 1020, 1035
DinI GGCGCC 2 cut(s) 722, 1350
DpnI GATC 4 cut(s) 361, 582, 708, 1332
DpnII GATC 4 cut(s) 359, 580, 706, 1330
Eam1104I CTCTTC 3 cut(s) 478, 1122, 1246
EarI CTCTTC 3 cut(s) 478, 1122, 1246
Eco130I CCWWGG 5 cut(s) 47, 355, 820, 1048, 1133
Eco24I GRGCYC 1 cut(s) 402
Eco31I GGTCTC 2 cut(s) 461, 1243
Eco47I GGWCC 1 cut(s) 824
Eco57I CTGAAG 4 cut(s) 321, 363, 1077, 1227
EcoO109I RGGNCCY 1 cut(s) 352
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 3 cut(s) 938, 970, 1080
EcoT14I CCWWGG 5 cut(s) 47, 355, 820, 1048, 1133
EcoT22I ATGCAT 1 cut(s) 1215
EcoT38I GRGCYC 1 cut(s) 402
EgeI GGCGCC 2 cut(s) 722, 1350
EheI GGCGCC 2 cut(s) 722, 1350
ErhI CCWWGG 5 cut(s) 47, 355, 820, 1048, 1133
Esp3I CGTCTC 1 cut(s) 369
FaeI CATG 9 cut(s) 51, 73, 377, 467, 848, 864, 988, 1217, 1292
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FaqI GGGAC 1 cut(s) 511
FatI CATG 9 cut(s) 47, 69, 373, 463, 844, 860, 984, 1213, 1288
FauNDI CATATG 1 cut(s) 829
FbaI TGATCA 1 cut(s) 706
Fnu4HI GCNGC 4 cut(s) 571, 724, 944, 1032
FokI GGATG 6 cut(s) 442, 878, 1097, 1222, 1251, 1255
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 4 cut(s) 571, 724, 944, 1032
GlaI GCGC 2 cut(s) 722, 1350
GluI GCNGC 4 cut(s) 571, 724, 944, 1032
GsaI CCCAGC 1 cut(s) 758
GsuI CTGGAG 1 cut(s) 954
HaeII RGCGCY 2 cut(s) 724, 1352
HaeIII GGCC 1 cut(s) 353
HapII CCGG 3 cut(s) 198, 673, 1235
HhaI GCGC 2 cut(s) 723, 1351
Hin1I GRCGYC 2 cut(s) 721, 1349
Hin1II CATG 9 cut(s) 51, 73, 377, 467, 848, 864, 988, 1217, 1292
Hin6I GCGC 2 cut(s) 721, 1349
HinP1I GCGC 2 cut(s) 721, 1349
HincII GTYRAC 1 cut(s) 1125
HindII GTYRAC 1 cut(s) 1125
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 7 cut(s) 155, 293, 335, 998, 1061, 1148, 1222
HpaII CCGG 3 cut(s) 198, 673, 1235
HphI GGTGA 4 cut(s) 36, 188, 1005, 1361
Hpy166II GTNNAC 2 cut(s) 835, 1125
Hpy188I TCNGA 8 cut(s) 154, 205, 301, 537, 645, 706, 1021, 1246
Hpy188III TCNNGA 5 cut(s) 374, 464, 578, 995, 1328
Hpy8I GTNNAC 2 cut(s) 835, 1125
HpyAV CCTTC 5 cut(s) 51, 296, 560, 640, 1084
HpyCH4III ACNGT 2 cut(s) 777, 1307
HpyCH4IV ACGT 1 cut(s) 444
HpyF10VI GCNNNNNNNGC 5 cut(s) 424, 539, 678, 727, 1261
HpyF3I CTNAG 6 cut(s) 99, 348, 407, 534, 1020, 1035
HpySE526I ACGT 1 cut(s) 444
Hsp92I GRCGYC 2 cut(s) 721, 1349
Hsp92II CATG 9 cut(s) 51, 73, 377, 467, 848, 864, 988, 1217, 1292
HspAI GCGC 2 cut(s) 721, 1349
KasI GGCGCC 2 cut(s) 720, 1348
Ksp22I TGATCA 1 cut(s) 706
Kzo9I GATC 4 cut(s) 359, 580, 706, 1330
Lsp1109I GCAGC 2 cut(s) 557, 955
LweI GCATC 4 cut(s) 557, 1075, 1200, 1273
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 2 cut(s) 85, 1011
MalI GATC 4 cut(s) 361, 582, 708, 1332
MboI GATC 4 cut(s) 359, 580, 706, 1330
MboII GAAGA 9 cut(s) 246, 288, 452, 465, 759, 1070, 1109, 1233, 1325
MflI RGATCY 1 cut(s) 1330
MhlI GDGCHC 2 cut(s) 402, 1111
MluCI AATT 7 cut(s) 4, 104, 250, 280, 853, 949, 1379
Mly113I GGCGCC 2 cut(s) 721, 1349
MlyI GAGTC 3 cut(s) 302, 1157, 1216
MmeI TCCRAC 1 cut(s) 392
Mph1103I ATGCAT 1 cut(s) 1215
MroXI GAANNNNTTC 1 cut(s) 65
MseI TTAA 2 cut(s) 857, 1387
MslI CAYNNNNRTG 2 cut(s) 226, 1308
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 3 cut(s) 198, 673, 1235
MspR9I CCNGG 3 cut(s) 940, 972, 1082
MvaI CCWGG 3 cut(s) 940, 972, 1082
MwoI GCNNNNNNNGC 5 cut(s) 424, 539, 678, 727, 1261
NarI GGCGCC 2 cut(s) 721, 1349
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 829
NdeII GATC 4 cut(s) 359, 580, 706, 1330
NlaIII CATG 9 cut(s) 51, 73, 377, 467, 848, 864, 988, 1217, 1292
NlaIV GGNNCC 2 cut(s) 722, 1350
NmuCI GTSAC 1 cut(s) 1011
NsiI ATGCAT 1 cut(s) 1215
NspI RCATGY 3 cut(s) 848, 1217, 1292
NspV TTCGAA 2 cut(s) 233, 438
PaeI GCATGC 2 cut(s) 848, 1217
PagI TCATGA 2 cut(s) 373, 463
PciI ACATGT 1 cut(s) 1288
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 4 cut(s) 155, 335, 998, 1061
PkrI GCNGC 4 cut(s) 572, 725, 945, 1033
PleI GAGTC 3 cut(s) 301, 1156, 1216
PluTI GGCGCC 2 cut(s) 724, 1352
PpsI GAGTC 3 cut(s) 301, 1156, 1216
PscI ACATGT 1 cut(s) 1288
PshAI GACNNNNGTC 1 cut(s) 822
Psp6I CCWGG 3 cut(s) 938, 970, 1080
PspFI CCCAGC 1 cut(s) 754
PspGI CCWGG 3 cut(s) 938, 970, 1080
PspN4I GGNNCC 2 cut(s) 722, 1350
PspPI GGNCC 2 cut(s) 352, 824
PstNI CAGNNNCTG 1 cut(s) 245
PsuI RGATCY 1 cut(s) 1330
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 2 cut(s) 434, 1250
RsaNI GTAC 2 cut(s) 433, 1249
RseI CAYNNNNRTG 2 cut(s) 226, 1308
SaqAI TTAA 2 cut(s) 857, 1387
SatI GCNGC 4 cut(s) 571, 724, 944, 1032
Sau3AI GATC 4 cut(s) 359, 580, 706, 1330
Sau96I GGNCC 2 cut(s) 352, 824
ScaI AGTACT 1 cut(s) 1250
SchI GAGTC 3 cut(s) 302, 1157, 1216
ScrFI CCNGG 3 cut(s) 940, 972, 1082
SduI GDGCHC 2 cut(s) 402, 1111
SfaNI GCATC 4 cut(s) 557, 1075, 1200, 1273
SfoI GGCGCC 2 cut(s) 722, 1350
SfuI TTCGAA 2 cut(s) 233, 438
SinI GGWCC 1 cut(s) 824
SmiMI CAYNNNNRTG 2 cut(s) 226, 1308
SmlI CTYRAG 2 cut(s) 881, 1224
SmoI CTYRAG 2 cut(s) 881, 1224
SphI GCATGC 2 cut(s) 848, 1217
Sse9I AATT 7 cut(s) 4, 104, 250, 280, 853, 949, 1379
SsiI CCGC 3 cut(s) 427, 724, 1031
SspDI GGCGCC 2 cut(s) 720, 1348
StyD4I CCNGG 3 cut(s) 938, 970, 1080
StyI CCWWGG 5 cut(s) 47, 355, 820, 1048, 1133
TaaI ACNGT 2 cut(s) 777, 1307
TaiI ACGT 1 cut(s) 447
TaqI TCGA 6 cut(s) 167, 233, 438, 977, 1151, 1275
TaqII GACCGA 1 cut(s) 247
TasI AATT 7 cut(s) 4, 104, 250, 280, 853, 949, 1379
TatI WGTACW 2 cut(s) 432, 1248
TauI GCSGC 2 cut(s) 726, 1034
TfiI GAWTC 4 cut(s) 155, 335, 998, 1061
Tru1I TTAA 2 cut(s) 857, 1387
Tru9I TTAA 2 cut(s) 857, 1387
TscAI CASTG 4 cut(s) 560, 692, 780, 1033
TseFI GTSAC 1 cut(s) 1011
TseI GCWGC 2 cut(s) 570, 943
Tsp45I GTSAC 1 cut(s) 1011
TspRI CASTG 4 cut(s) 560, 692, 780, 1033
VpaK11BI GGWCC 1 cut(s) 824
XapI RAATTY 3 cut(s) 4, 853, 949
XceI RCATGY 3 cut(s) 848, 1217, 1292
XmnI GAANNNNTTC 1 cut(s) 65
ZrmI AGTACT 1 cut(s) 1250
Zsp2I ATGCAT 1 cut(s) 1215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.