AT5G43540

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013418
Physical Location & Seq
Forward (+)
17496855 .. 17497694
840 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G43540.1

Sequence Viewer

Length: 414 bp
ATGGAGTGTGAGAGATCATCGTCGTCCACGTCATCAGAAACCGGAGCAGTCAGGCACCGTCGTACGTCGTCGTCGTCAGTCTCCACCGTGACGAGACGAATGTACGAGTGCACTTTCTGCAAAAGAGGTTTCACAAACGCACAAGCTTTAGGTGGTCATATGAACATCCATCGACGTGACCGTCTCAACAAGGCCAAGGTGCAAAACGATGCTGACGTGGCACTCTCGCAAACTCATAGATGTTTCCACGTGGCGTCTGACCTTGGAGGCTACGAGCAAGTAGACTCCGTCGTGTTGAGGACGACGACCTCGAACTACATCCAACACTTACGAATCGGCTCGATGGCTACAAGGAGAGAAAACGTCGTCGTTGAAGGAAATGAAATCGATTTGGAGCTGCGTCTTGGCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

137

Amino Acids

15.35

Weight (kDa)

9.12

Isoelectric Point (pI)

65.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013418)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53820 AT5G43540
fragaria_vesca FvH4_4g03020
malus_domestica MD13G1209600.v1.1 MD16G1212300.v1.1
prunus_persica Prupe.1G034200_v2.0.a1
pyrus_communis pycom13g18170 pycom16g17830
rosa_chinensis RchiOBHm_Chr4g0391211
rosa_laevigata RLG00000009877
rosa_multiflora Rmu_sc0000040.1_g000014
rosa_roxburghii Rroxscaffold_5G00337000
rosa_rugosa Rorug03G0335200
rosa_samantha Rh4AG035900 Rh4BG030900 Rh4CG039200 Rh4DG033600
rosa_wichuraiana Rw4G002820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 180
AccB1I GGYRCC 1 cut(s) 54
AccI GTMKAC 1 cut(s) 282
AcvI CACGTG 1 cut(s) 250
AcyI GRCGYC 1 cut(s) 254
AfaI GTAC 2 cut(s) 64, 104
AgsI TTSAA 1 cut(s) 374
AjiI CACGTC 3 cut(s) 30, 176, 217
AluBI AGCT 2 cut(s) 146, 397
AluI AGCT 2 cut(s) 146, 397
Alw21I GWGCWC 1 cut(s) 113
Alw26I GTCTC 3 cut(s) 85, 88, 188
Alw44I GTGCAC 1 cut(s) 109
AoxI GGCC 1 cut(s) 192
ApaLI GTGCAC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 397
BaeGI GKGCMC 1 cut(s) 113
BanI GGYRCC 1 cut(s) 54
BbrPI CACGTG 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 113
BbvI GCAGC 1 cut(s) 384
BccI CCATC 2 cut(s) 177, 337
BcoDI GTCTC 3 cut(s) 85, 88, 188
BisI GCNGC 1 cut(s) 398
BlsI GCNGC 1 cut(s) 399
BmgBI CACGTC 3 cut(s) 30, 176, 217
BmiI GGNNCC 1 cut(s) 56
BmsI GCATC 1 cut(s) 199
Bsa29I ATCGAT 1 cut(s) 387
BsaAI YACGTR 1 cut(s) 250
BsaHI GRCGYC 1 cut(s) 254
BsaJI CCNNGG 2 cut(s) 195, 262
BsaWI WCCGGW 1 cut(s) 41
BseCI ATCGAT 1 cut(s) 387
BseDI CCNNGG 2 cut(s) 195, 262
BseGI GGATG 2 cut(s) 165, 318
BseSI GKGCMC 1 cut(s) 113
BseXI GCAGC 1 cut(s) 384
BshFI GGCC 1 cut(s) 194
BshNI GGYRCC 1 cut(s) 54
BshVI ATCGAT 1 cut(s) 387
BsiHKAI GWGCWC 1 cut(s) 113
BsiSI CCGG 1 cut(s) 42
BsiWI CGTACG 1 cut(s) 62
BsmAI GTCTC 3 cut(s) 85, 88, 188
BsmBI CGTCTC 2 cut(s) 88, 188
BsnI GGCC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 113
Bsp143I GATC 1 cut(s) 14
BspANI GGCC 1 cut(s) 194
BspDI ATCGAT 1 cut(s) 387
BspLI GGNNCC 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 54
BssECI CCNNGG 2 cut(s) 195, 262
BssMI GATC 1 cut(s) 14
BssNI GRCGYC 1 cut(s) 254
BssT1I CCWWGG 2 cut(s) 195, 262
Bst4CI ACNGT 3 cut(s) 59, 88, 182
BstACI GRCGYC 1 cut(s) 254
BstAPI GCANNNNNTGC 1 cut(s) 117
BstBAI YACGTR 1 cut(s) 250
BstF5I GGATG 2 cut(s) 165, 318
BstKTI GATC 1 cut(s) 17
BstMAI GTCTC 3 cut(s) 85, 88, 188
BstMBI GATC 1 cut(s) 14
BstMWI GCNNNNNNNGC 2 cut(s) 117, 218
BstSLI GKGCMC 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 384
Bsu15I ATCGAT 1 cut(s) 387
BsuRI GGCC 1 cut(s) 194
BsuTUI ATCGAT 1 cut(s) 387
BtrI CACGTC 3 cut(s) 30, 176, 217
BtsCI GGATG 2 cut(s) 165, 318
ClaI ATCGAT 1 cut(s) 387
CseI GACGC 2 cut(s) 243, 389
Csp6I GTAC 2 cut(s) 63, 103
CviJI RGCY 7 cut(s) 146, 194, 270, 339, 347, 397, 408
CviKI_1 RGCY 7 cut(s) 146, 194, 270, 339, 347, 397, 408
CviQI GTAC 2 cut(s) 63, 103
DpnI GATC 1 cut(s) 16
DpnII GATC 1 cut(s) 14
DrdI GACNNNNNNGTC 1 cut(s) 180
DseDI GACNNNNNNGTC 1 cut(s) 180
Eco130I CCWWGG 2 cut(s) 195, 262
Eco72I CACGTG 1 cut(s) 250
EcoT14I CCWWGG 2 cut(s) 195, 262
ErhI CCWWGG 2 cut(s) 195, 262
Esp3I CGTCTC 2 cut(s) 88, 188
FaiI YATR 4 cut(s) 159, 161, 237, 412
FauNDI CATATG 1 cut(s) 159
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 1 cut(s) 398
FokI GGATG 2 cut(s) 152, 305
Fsp4HI GCNGC 1 cut(s) 398
GluI GCNGC 1 cut(s) 398
HaeIII GGCC 1 cut(s) 194
HapII CCGG 1 cut(s) 42
HgaI GACGC 2 cut(s) 243, 389
Hin1I GRCGYC 1 cut(s) 254
HindIII AAGCTT 1 cut(s) 144
HinfI GANTC 2 cut(s) 284, 333
HpaII CCGG 1 cut(s) 42
Hpy166II GTNNAC 3 cut(s) 27, 111, 283
Hpy188I TCNGA 2 cut(s) 37, 259
Hpy8I GTNNAC 3 cut(s) 27, 111, 283
HpyAV CCTTC 1 cut(s) 368
HpyCH4III ACNGT 3 cut(s) 59, 88, 182
HpyCH4IV ACGT 6 cut(s) 29, 65, 175, 216, 249, 363
HpyCH4V TGCA 3 cut(s) 111, 120, 202
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 218
HpySE526I ACGT 6 cut(s) 29, 65, 175, 216, 249, 363
Hsp92I GRCGYC 1 cut(s) 254
Kzo9I GATC 1 cut(s) 14
LmnI GCTCC 2 cut(s) 44, 394
LpnPI CCDG 2 cut(s) 37, 55
Lsp1109I GCAGC 1 cut(s) 384
LweI GCATC 1 cut(s) 199
MaeII ACGT 6 cut(s) 29, 65, 175, 216, 249, 363
MaeIII GTNAC 2 cut(s) 88, 176
MalI GATC 1 cut(s) 16
MboI GATC 1 cut(s) 14
MhlI GDGCHC 1 cut(s) 113
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 346
MnlI CCTC 4 cut(s) 119, 260, 291, 319
MslI CAYNNNNRTG 1 cut(s) 174
MspI CCGG 1 cut(s) 42
MwoI GCNNNNNNNGC 2 cut(s) 117, 218
NdeI CATATG 1 cut(s) 159
NdeII GATC 1 cut(s) 14
NlaIV GGNNCC 1 cut(s) 56
NmuCI GTSAC 2 cut(s) 88, 176
PcsI WCGNNNNNNNCGW 5 cut(s) 26, 71, 178, 213, 308
PfeI GAWTC 1 cut(s) 333
Pfl23II CGTACG 1 cut(s) 62
PflFI GACNNNGTC 1 cut(s) 287
PkrI GCNGC 1 cut(s) 399
PleI GAGTC 1 cut(s) 278
PmaCI CACGTG 1 cut(s) 250
PmlI CACGTG 1 cut(s) 250
PpsI GAGTC 1 cut(s) 278
Ppu21I YACGTR 1 cut(s) 250
PspCI CACGTG 1 cut(s) 250
PspLI CGTACG 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 56
PsyI GACNNNGTC 1 cut(s) 287
RsaI GTAC 2 cut(s) 64, 104
RsaNI GTAC 2 cut(s) 63, 103
RseI CAYNNNNRTG 1 cut(s) 174
SatI GCNGC 1 cut(s) 398
Sau3AI GATC 1 cut(s) 14
SchI GAGTC 1 cut(s) 278
SduI GDGCHC 1 cut(s) 113
SfaNI GCATC 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 174
StyI CCWWGG 2 cut(s) 195, 262
TaaI ACNGT 3 cut(s) 59, 88, 182
TaiI ACGT 6 cut(s) 32, 68, 178, 219, 252, 366
TaqI TCGA 4 cut(s) 172, 311, 341, 387
TfiI GAWTC 1 cut(s) 333
TseFI GTSAC 2 cut(s) 88, 176
TseI GCWGC 1 cut(s) 397
Tsp45I GTSAC 2 cut(s) 88, 176
TspDTI ATGAA 2 cut(s) 176, 396
TspGWI ACGGA 1 cut(s) 277
Tth111I GACNNNGTC 1 cut(s) 287
VneI GTGCAC 1 cut(s) 109
XmiI GTMKAC 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.