Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013418

Physical Location & Seq

Genomic Coordinates Forward (+)

2375310 .. 2375891

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G034200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAATCTTGGAGACCAAGAAGCCCAGAGACTAGTTTATCAAGTGATGAGGATCAAGTCAAAGATCATGATCAAGATTCGGGTTCTACTACGGCGAAACGAAGCTACGAATGCACATTTTGCAAGAGGGGTTTCACCAACGCTCAAGCCCTGGGAGGTCACATGAATATCCACAGGAAAGACAGAGCCAAAGCAAAGCAACTCGTCTCAGGTACTTCATCACTAAATTCAAACCACTACTCAAATGAGGATCAATACTCCTCTTTGAGTACATATCATCATCAACAATTTAGTACTGCACCAATTTCAAGCCAGGCGGGTTCAGGGCACTATCCGGTTGTGGATCAGAGGAATTACCAGATGTATTTTCAGCCATCTGGGTCCAGCCCTAGAATCCCATATGGTTATGACCATGATGATTCAATTGGGTCAAGGCATCCGTCTTTGGGTGTGAACCAAGAACTCTGGGGTGCAAATTTGAGCTTGCGGTTCAGCCCCAACCATTTGGAAGATGATGAGTACAGAAGGGGACTGAGGAGTAATGATGAGGTGGATTTGGAGCTTCGACTTGGGCATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051252 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2000278 GO:2000573 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

194

Amino Acids

21.78

Weight (kDa)

6.1

Isoelectric Point (pI)

65.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53820 AT5G43540
fragaria_vesca	FvH4_4g03020
malus_domestica	MD13G1209600.v1.1 MD16G1212300.v1.1
prunus_persica	Prupe.1G034200_v2.0.a1
pyrus_communis	pycom13g18170 pycom16g17830
rosa_chinensis	RchiOBHm_Chr4g0391211
rosa_laevigata	RLG00000009877
rosa_multiflora	Rmu_sc0000040.1_g000014
rosa_roxburghii	Rroxscaffold_5G00337000
rosa_rugosa	Rorug03G0335200
rosa_samantha	Rh4AG035900 Rh4BG030900 Rh4CG039200 Rh4DG033600
rosa_wichuraiana	Rw4G002820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	317, 487
AclWI	GGATC	3 cut(s)	60, 258, 351
AcsI	RAATTY	2 cut(s)	226, 475
AfaI	GTAC	4 cut(s)	214, 271, 295, 521
AfiI	CCNNNNNNNGG	1 cut(s)	446
AgsI	TTSAA	3 cut(s)	231, 309, 423
AhlI	ACTAGT	1 cut(s)	32
AjnI	CCWGG	2 cut(s)	150, 312
AluBI	AGCT	3 cut(s)	105, 483, 562
AluI	AGCT	3 cut(s)	105, 483, 562
Alw26I	GTCTC	3 cut(s)	7, 23, 211
AlwI	GGATC	3 cut(s)	60, 258, 351
ApoI	RAATTY	2 cut(s)	226, 475
AspS9I	GGNCC	1 cut(s)	381
AsuHPI	GGTGA	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	381
BaeGI	GKGCMC	1 cut(s)	330
BccI	CCATC	1 cut(s)	382
BceAI	ACGGC	1 cut(s)	108
BciT130I	CCWGG	2 cut(s)	152, 314
BclI	TGATCA	1 cut(s)	70
BcoDI	GTCTC	3 cut(s)	7, 23, 211
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	2 cut(s)	33, 390
BmcAI	AGTACT	1 cut(s)	295
Bme1390I	CCNGG	2 cut(s)	152, 314
Bme18I	GGWCC	1 cut(s)	381
BmgT120I	GGNCC	1 cut(s)	381
BmiI	GGNNCC	1 cut(s)	382
BmrFI	CCNGG	2 cut(s)	152, 314
BmsI	GCATC	1 cut(s)	445
BpuEI	CTTGAG	1 cut(s)	129
BsaBI	GATNNNNATC	2 cut(s)	51, 69
BsaI	GGTCTC	1 cut(s)	7
BsaJI	CCNNGG	2 cut(s)	150, 151
BsaWI	WCCGGW	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse8I	GATNNNNATC	2 cut(s)	51, 69
BseBI	CCWGG	2 cut(s)	152, 314
BseDI	CCNNGG	2 cut(s)	150, 151
BseGI	GGATG	1 cut(s)	436
BseJI	GATNNNNATC	2 cut(s)	51, 69
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMII	CTCAG	2 cut(s)	222, 524
BseRI	GAGGAG	2 cut(s)	250, 550
BseSI	GKGCMC	1 cut(s)	330
BsgI	GTGCAG	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	1 cut(s)	543
BslI	CCNNNNNNNGG	1 cut(s)	446
BsmAI	GTCTC	3 cut(s)	7, 23, 211
BsmBI	CGTCTC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	543
BsmI	GAATGC	1 cut(s)	116
Bso31I	GGTCTC	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	5 cut(s)	52, 64, 70, 250, 343
BspACI	CCGC	2 cut(s)	317, 487
BspCNI	CTCAG	2 cut(s)	221, 525
BspHI	TCATGA	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	382
BspPI	GGATC	3 cut(s)	60, 258, 351
BspTNI	GGTCTC	1 cut(s)	7
BssECI	CCNNGG	2 cut(s)	150, 151
BssMI	GATC	5 cut(s)	52, 64, 70, 250, 343
Bst2UI	CCWGG	2 cut(s)	152, 314
BstAPI	GCANNNNNTGC	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	485
BstDEI	CTNAG	2 cut(s)	208, 533
BstF5I	GGATG	1 cut(s)	436
BstKTI	GATC	5 cut(s)	55, 67, 73, 253, 346
BstMAI	GTCTC	3 cut(s)	7, 23, 211
BstMBI	GATC	5 cut(s)	52, 64, 70, 250, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 120
BstNI	CCWGG	2 cut(s)	152, 314
BstSCI	CCNGG	2 cut(s)	150, 312
BstSLI	GKGCMC	1 cut(s)	330
BstXI	CCANNNNNNTGG	1 cut(s)	505
BtsCI	GGATG	1 cut(s)	436
Cac8I	GCNNGC	1 cut(s)	485
CciI	TCATGA	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	381
Csp6I	GTAC	4 cut(s)	213, 270, 294, 520
CviAII	CATG	4 cut(s)	68, 163, 413, 575
CviQI	GTAC	4 cut(s)	213, 270, 294, 520
DdeI	CTNAG	2 cut(s)	208, 533
DpnI	GATC	5 cut(s)	54, 66, 72, 252, 345
DpnII	GATC	5 cut(s)	52, 64, 70, 250, 343
Eco31I	GGTCTC	1 cut(s)	7
Eco47I	GGWCC	1 cut(s)	381
EcoRII	CCWGG	2 cut(s)	150, 312
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	4 cut(s)	71, 166, 416, 578
FaiI	YATR	8 cut(s)	69, 164, 274, 400, 402, 408, 414, 576
FaqI	GGGAC	1 cut(s)	543
FatI	CATG	4 cut(s)	67, 162, 412, 574
FauI	CCCGC	1 cut(s)	310
FauNDI	CATATG	1 cut(s)	400
FbaI	TGATCA	1 cut(s)	70
FokI	GGATG	1 cut(s)	423
FspBI	CTAG	2 cut(s)	33, 390
HapII	CCGG	1 cut(s)	335
Hin1II	CATG	4 cut(s)	71, 166, 416, 578
HinfI	GANTC	4 cut(s)	5, 77, 393, 419
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	2 cut(s)	68, 74
Hpy8I	GTNNAC	1 cut(s)	454
HpyAV	CCTTC	1 cut(s)	519
HpyCH4V	TGCA	4 cut(s)	114, 123, 299, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 120
HpyF3I	CTNAG	2 cut(s)	208, 533
Hsp92II	CATG	4 cut(s)	71, 166, 416, 578
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	5 cut(s)	52, 64, 70, 250, 343
LmnI	GCTCC	1 cut(s)	559
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	2 cut(s)	33, 390
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	5 cut(s)	54, 66, 72, 252, 345
MboI	GATC	5 cut(s)	52, 64, 70, 250, 343
MboII	GAAGA	1 cut(s)	521
MfeI	CAATTG	1 cut(s)	423
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	6 cut(s)	226, 287, 303, 352, 423, 475
MnlI	CCTC	8 cut(s)	43, 120, 149, 241, 271, 342, 528, 541
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	2 cut(s)	152, 314
MunI	CAATTG	1 cut(s)	423
Mva1269I	GAATGC	1 cut(s)	116
MvaI	CCWGG	2 cut(s)	152, 314
MwoI	GCNNNNNNNGC	2 cut(s)	111, 120
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	5 cut(s)	52, 64, 70, 250, 343
NlaIII	CATG	4 cut(s)	71, 166, 416, 578
NlaIV	GGNNCC	1 cut(s)	382
NmuCI	GTSAC	1 cut(s)	158
PagI	TCATGA	1 cut(s)	67
PasI	CCCWGGG	1 cut(s)	151
PctI	GAATGC	1 cut(s)	116
PfeI	GAWTC	4 cut(s)	5, 77, 393, 419
Psp6I	CCWGG	2 cut(s)	150, 312
PspGI	CCWGG	2 cut(s)	150, 312
PspN4I	GGNNCC	1 cut(s)	382
PspPI	GGNCC	1 cut(s)	381
RsaI	GTAC	4 cut(s)	214, 271, 295, 521
RsaNI	GTAC	4 cut(s)	213, 270, 294, 520
Sau3AI	GATC	5 cut(s)	52, 64, 70, 250, 343
Sau96I	GGNCC	1 cut(s)	381
ScaI	AGTACT	1 cut(s)	295
ScrFI	CCNGG	2 cut(s)	152, 314
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	6 cut(s)	107, 160, 214, 485, 552, 564
SfaNI	GCATC	1 cut(s)	445
SinI	GGWCC	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	144
SmoI	CTYRAG	1 cut(s)	144
SpeI	ACTAGT	1 cut(s)	32
Sse9I	AATT	6 cut(s)	226, 287, 303, 352, 423, 475
SsiI	CCGC	2 cut(s)	317, 487
SspMI	CTAG	2 cut(s)	33, 390
StyD4I	CCNGG	2 cut(s)	150, 312
TaqI	TCGA	1 cut(s)	565
TasI	AATT	6 cut(s)	226, 287, 303, 352, 423, 475
TatI	WGTACW	3 cut(s)	269, 293, 519
TfiI	GAWTC	4 cut(s)	5, 77, 393, 419
TseFI	GTSAC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	2 cut(s)	179, 207
TspGWI	ACGGA	1 cut(s)	429
VpaK11BI	GGWCC	1 cut(s)	381
XapI	RAATTY	2 cut(s)	226, 475
XspI	CTAG	2 cut(s)	33, 390
ZrmI	AGTACT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.