Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013418

Physical Location & Seq

Genomic Coordinates Forward (+)

2660415 .. 2661587

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGAGTCATGGACAGTTCCCCTCAGCCCAGAGACTTCGAGTGATGAAGAGAGAGATGAAAATTCCGGCACTGCGAAACGAAGCTACGAGTGCACATTCTGCAAGCGAGGCTTCACCAACGCTCAAGCCTTGGGAGGACACATGAACATTCACCGCAAGGATCGAGCCAAGGCCAAGCAACTCTCGAACCAGTACCGCTCCAACGAGGACTACGTATCAATGTCTGCTTCTCAGTTCAGCACACCGATTTATACTCAACCGGCTTCTGGGTACTACCCAGTTTTGGGTCATCATGAGCATCATGTGCAGAGGAACTATCATCAGATGTGTTATCAGCCATCTGAGTCTAGCCCTAGGTTTTATAGTTCCATGGATGATGATTCAATGTCATCACAGTCGTCTGTGAGTCATCATGTGAACCAAGAACTCTGGGGTGCTAATTTGAGCTTGAGGTTCAGCCCAGCTGGGCGCATGGAGGACGATGATTTCAGAATGGGAGTGAGGAATCATGAAGAAGTTGATTTGGAGCTTCGTCTAGGCCATGGAGGATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051252 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2000278 GO:2000573 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

21.03

Weight (kDa)

5.85

Isoelectric Point (pI)

67.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53820 AT5G43540
fragaria_vesca	FvH4_4g03020
malus_domestica	MD13G1209600.v1.1 MD16G1212300.v1.1
prunus_persica	Prupe.1G034200_v2.0.a1
pyrus_communis	pycom13g18170 pycom16g17830
rosa_chinensis	RchiOBHm_Chr4g0391211
rosa_laevigata	RLG00000009877
rosa_multiflora	Rmu_sc0000040.1_g000014
rosa_roxburghii	Rroxscaffold_5G00337000
rosa_rugosa	Rorug03G0335200
rosa_samantha	Rh4AG035900 Rh4BG030900 Rh4CG039200 Rh4DG033600
rosa_wichuraiana	Rw4G002820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	198
AciI	CCGC	2 cut(s)	154, 196
AclWI	GGATC	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	61
AfaI	GTAC	2 cut(s)	194, 272
AfiI	CCNNNNNNNGG	3 cut(s)	266, 283, 284
AgsI	TTSAA	1 cut(s)	384
AluBI	AGCT	4 cut(s)	84, 447, 464, 529
AluI	AGCT	4 cut(s)	84, 447, 464, 529
Alw21I	GWGCWC	1 cut(s)	95
Alw26I	GTCTC	1 cut(s)	26
Alw44I	GTGCAC	1 cut(s)	91
AlwI	GGATC	1 cut(s)	168
AoxI	GGCC	2 cut(s)	171, 538
ApaLI	GTGCAC	1 cut(s)	91
ApoI	RAATTY	1 cut(s)	61
AspA2I	CCTAGG	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	471
AsuHPI	GGTGA	2 cut(s)	106, 143
AvrII	CCTAGG	1 cut(s)	353
BaeGI	GKGCMC	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	95
BbvCI	CCTCAGC	1 cut(s)	23
BccI	CCATC	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	3 cut(s)	348, 354, 536
BlnI	CCTAGG	1 cut(s)	353
BmrI	ACTGGG	1 cut(s)	272
BmsI	GCATC	1 cut(s)	307
BmuI	ACTGGG	1 cut(s)	272
Bpu10I	CCTNAGC	1 cut(s)	23
BpuEI	CTTGAG	2 cut(s)	108, 469
BsaAI	YACGTR	1 cut(s)	214
BsaJI	CCNNGG	5 cut(s)	129, 168, 353, 369, 541
Bsc4I	CCNNNNNNNGG	3 cut(s)	266, 283, 284
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	2 cut(s)	190, 278
BseDI	CCNNGG	5 cut(s)	129, 168, 353, 369, 541
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	3 cut(s)	266, 283, 284
BseMII	CTCAG	3 cut(s)	37, 245, 333
BseNI	ACTGG	2 cut(s)	190, 278
BseSI	GKGCMC	1 cut(s)	95
BseYI	CCCAGC	2 cut(s)	460, 464
BsgI	GTGCAG	1 cut(s)	326
BshFI	GGCC	2 cut(s)	173, 540
BsiHKAI	GWGCWC	1 cut(s)	95
BsiSI	CCGG	2 cut(s)	66, 260
BslI	CCNNNNNNNGG	3 cut(s)	266, 283, 284
BsmAI	GTCTC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	173, 540
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	160
Bsp19I	CCATGG	2 cut(s)	369, 541
BspACI	CCGC	2 cut(s)	154, 196
BspANI	GGCC	2 cut(s)	173, 540
BspCNI	CTCAG	3 cut(s)	36, 244, 334
BspHI	TCATGA	2 cut(s)	292, 508
BspPI	GGATC	1 cut(s)	168
BsrBI	CCGCTC	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	259
BsrI	ACTGG	2 cut(s)	190, 278
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	5 cut(s)	129, 168, 353, 369, 541
BssMI	GATC	1 cut(s)	160
BssT1I	CCWWGG	5 cut(s)	129, 168, 353, 369, 541
Bst4CI	ACNGT	2 cut(s)	16, 396
Bst6I	CTCTTC	1 cut(s)	42
BstAPI	GCANNNNNTGC	2 cut(s)	99, 304
BstBAI	YACGTR	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	104
BstDEI	CTNAG	3 cut(s)	23, 231, 342
BstDSI	CCRYGG	2 cut(s)	369, 541
BstF5I	GGATG	1 cut(s)	379
BstHHI	GCGC	1 cut(s)	471
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	4 cut(s)	90, 99, 108, 304
BstSLI	GKGCMC	1 cut(s)	95
BstSNI	TACGTA	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	173, 540
BtgI	CCRYGG	2 cut(s)	369, 541
BtsCI	GGATG	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	104
CciI	TCATGA	2 cut(s)	292, 508
CfoI	GCGC	1 cut(s)	471
Cfr10I	RCCGGY	1 cut(s)	259
Csp6I	GTAC	2 cut(s)	193, 271
CviAII	CATG	9 cut(s)	9, 142, 293, 302, 370, 413, 472, 509, 542
CviQI	GTAC	2 cut(s)	193, 271
DdeI	CTNAG	3 cut(s)	23, 231, 342
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco105I	TACGTA	1 cut(s)	214
Eco130I	CCWWGG	5 cut(s)	129, 168, 353, 369, 541
EcoT14I	CCWWGG	5 cut(s)	129, 168, 353, 369, 541
ErhI	CCWWGG	5 cut(s)	129, 168, 353, 369, 541
FaeI	CATG	9 cut(s)	12, 145, 296, 305, 373, 416, 475, 512, 545
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FatI	CATG	9 cut(s)	8, 141, 292, 301, 369, 412, 471, 508, 541
FokI	GGATG	1 cut(s)	386
FspBI	CTAG	3 cut(s)	348, 354, 536
GlaI	GCGC	1 cut(s)	470
GsaI	CCCAGC	2 cut(s)	464, 468
HaeIII	GGCC	2 cut(s)	173, 540
HapII	CCGG	2 cut(s)	66, 260
HhaI	GCGC	1 cut(s)	471
Hin1II	CATG	9 cut(s)	12, 145, 296, 305, 373, 416, 475, 512, 545
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HinfI	GANTC	5 cut(s)	5, 344, 380, 406, 505
HpaII	CCGG	2 cut(s)	66, 260
HphI	GGTGA	2 cut(s)	106, 143
Hpy166II	GTNNAC	2 cut(s)	93, 418
Hpy188I	TCNGA	3 cut(s)	324, 343, 491
Hpy188III	TCNNGA	3 cut(s)	184, 293, 509
Hpy8I	GTNNAC	2 cut(s)	93, 418
HpyCH4III	ACNGT	2 cut(s)	16, 396
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	3 cut(s)	93, 102, 307
HpyF10VI	GCNNNNNNNGC	4 cut(s)	90, 99, 108, 304
HpyF3I	CTNAG	3 cut(s)	23, 231, 342
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	9 cut(s)	12, 145, 296, 305, 373, 416, 475, 512, 545
HspAI	GCGC	1 cut(s)	469
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	2 cut(s)	203, 526
LpnPI	CCDG	9 cut(s)	42, 79, 203, 252, 273, 291, 415, 450, 474
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	3 cut(s)	348, 354, 536
MaeII	ACGT	1 cut(s)	213
MalI	GATC	1 cut(s)	162
MbiI	CCGCTC	1 cut(s)	198
MboI	GATC	1 cut(s)	160
MboII	GAAGA	2 cut(s)	59, 524
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	2 cut(s)	61, 439
MlyI	GAGTC	3 cut(s)	14, 353, 415
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	9 cut(s)	32, 101, 128, 199, 303, 444, 469, 495, 539
MspA1I	CMGCKG	1 cut(s)	464
MspI	CCGG	2 cut(s)	66, 260
MwoI	GCNNNNNNNGC	4 cut(s)	90, 99, 108, 304
NcoI	CCATGG	2 cut(s)	369, 541
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	9 cut(s)	12, 145, 296, 305, 373, 416, 475, 512, 545
PagI	TCATGA	2 cut(s)	292, 508
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	380, 505
PleI	GAGTC	3 cut(s)	13, 352, 414
PpsI	GAGTC	3 cut(s)	13, 352, 414
Ppu21I	YACGTR	1 cut(s)	214
PspFI	CCCAGC	2 cut(s)	460, 464
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	2 cut(s)	194, 272
RsaNI	GTAC	2 cut(s)	193, 271
Sau3AI	GATC	1 cut(s)	160
SchI	GAGTC	3 cut(s)	14, 353, 415
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	7 cut(s)	86, 216, 359, 449, 455, 466, 531
SfaNI	GCATC	1 cut(s)	307
SmlI	CTYRAG	2 cut(s)	123, 448
SmoI	CTYRAG	2 cut(s)	123, 448
SnaBI	TACGTA	1 cut(s)	214
Sse9I	AATT	2 cut(s)	61, 439
SsiI	CCGC	2 cut(s)	154, 196
SspMI	CTAG	3 cut(s)	348, 354, 536
StyI	CCWWGG	5 cut(s)	129, 168, 353, 369, 541
TaaI	ACNGT	2 cut(s)	16, 396
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	3 cut(s)	38, 163, 185
TasI	AATT	2 cut(s)	61, 439
TfiI	GAWTC	2 cut(s)	380, 505
TscAI	CASTG	1 cut(s)	76
TspDTI	ATGAA	4 cut(s)	60, 72, 158, 525
TspRI	CASTG	1 cut(s)	76
VneI	GTGCAC	1 cut(s)	91
XapI	RAATTY	1 cut(s)	61
XmaJI	CCTAGG	1 cut(s)	353
XspI	CTAG	3 cut(s)	348, 354, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.