Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000040.1

Orthogroup ID

OG0013418

Physical Location & Seq

Genomic Coordinates Forward (+)

61435 .. 61995

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000040.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atggaatcatggacagtacccctcagcccagagacatcaagtgatgaagagagagagagagatgataattccggctctgcaaaacgaagctacgagtgcacattctgcaagcgaggcttcaccaacgctcaagccttgggaggacacatgaacattcaccgcaaggatagagcaaaggccaagcaactctcgaaccagtaccgctccaacgaggactgcatatctatgtcttcttctcagttcagtgcaccagtttacactcaaccagcttctgggtactacccggttttggctcatcatgagcatcatgtgcaaaggaactatcatcagatgtattatcagccatccgagtcgagtgctaggttttatggttccctgaatgatgattcaatgtcatcacagtcttctatgagtcatcatgtgaaccaagaactctggggtgccaatttgagcttgaggttcagcccaactgggcgaatggaggatgatgatttcagaatgggtgtgaggaatcatgaagaagttgatttggagcttcgtctaggccatggaggattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051252 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2000278 GO:2000573 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

21.28

Weight (kDa)

5.97

Isoelectric Point (pI)

69.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53820 AT5G43540
fragaria_vesca	FvH4_4g03020
malus_domestica	MD13G1209600.v1.1 MD16G1212300.v1.1
prunus_persica	Prupe.1G034200_v2.0.a1
pyrus_communis	pycom13g18170 pycom16g17830
rosa_chinensis	RchiOBHm_Chr4g0391211
rosa_laevigata	RLG00000009877
rosa_multiflora	Rmu_sc0000040.1_g000014
rosa_roxburghii	Rroxscaffold_5G00337000
rosa_rugosa	Rorug03G0335200
rosa_samantha	Rh4AG035900 Rh4BG030900 Rh4CG039200 Rh4DG033600
rosa_wichuraiana	Rw4G002820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	440
AccB7I	CCANNNNNTGG	1 cut(s)	272
AccBSI	CCGCTC	1 cut(s)	204
AciI	CCGC	2 cut(s)	160, 202
AfaI	GTAC	3 cut(s)	18, 200, 278
AfiI	CCNNNNNNNGG	2 cut(s)	272, 289
AgsI	TTSAA	1 cut(s)	390
AluBI	AGCT	4 cut(s)	90, 269, 453, 535
AluI	AGCT	4 cut(s)	90, 269, 453, 535
Alw21I	GWGCWC	2 cut(s)	101, 250
Alw26I	GTCTC	1 cut(s)	26
Alw44I	GTGCAC	2 cut(s)	97, 246
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	2 cut(s)	177, 544
ApaLI	GTGCAC	2 cut(s)	97, 246
AsuC2I	CCSGG	1 cut(s)	284
AsuHPI	GGTGA	2 cut(s)	112, 149
BaeGI	GKGCMC	2 cut(s)	101, 250
BanI	GGYRCC	1 cut(s)	440
BbsI	GAAGAC	2 cut(s)	222, 396
Bbv12I	GWGCWC	2 cut(s)	101, 250
BbvCI	CCTCAGC	1 cut(s)	23
BccI	CCATC	1 cut(s)	352
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BcnI	CCSGG	1 cut(s)	284
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	2 cut(s)	360, 542
Bme1390I	CCNGG	1 cut(s)	284
BmiI	GGNNCC	2 cut(s)	373, 442
BmrFI	CCNGG	1 cut(s)	284
BmrI	ACTGGG	1 cut(s)	480
BmsI	GCATC	1 cut(s)	313
BmuI	ACTGGG	1 cut(s)	480
BpiI	GAAGAC	2 cut(s)	222, 396
Bpu10I	CCTNAGC	1 cut(s)	23
BpuEI	CTTGAG	2 cut(s)	114, 475
BpuMI	CCSGG	1 cut(s)	284
BsaJI	CCNNGG	2 cut(s)	135, 547
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 289
Bse1I	ACTGG	3 cut(s)	196, 251, 475
BseDI	CCNNGG	2 cut(s)	135, 547
BseGI	GGATG	2 cut(s)	344, 490
BseLI	CCNNNNNNNGG	2 cut(s)	272, 289
BseMII	CTCAG	2 cut(s)	37, 251
BseNI	ACTGG	3 cut(s)	196, 251, 475
BseSI	GKGCMC	2 cut(s)	101, 250
BshFI	GGCC	2 cut(s)	179, 546
BshNI	GGYRCC	1 cut(s)	440
BsiHKAI	GWGCWC	2 cut(s)	101, 250
BsiSI	CCGG	2 cut(s)	72, 284
BslI	CCNNNNNNNGG	2 cut(s)	272, 289
BsmAI	GTCTC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	179, 546
Bsp1286I	GDGCHC	2 cut(s)	101, 250
Bsp19I	CCATGG	1 cut(s)	547
BspACI	CCGC	2 cut(s)	160, 202
BspANI	GGCC	2 cut(s)	179, 546
BspCNI	CTCAG	2 cut(s)	36, 250
BspHI	TCATGA	2 cut(s)	298, 514
BspLI	GGNNCC	2 cut(s)	373, 442
BspT107I	GGYRCC	1 cut(s)	440
BsrBI	CCGCTC	1 cut(s)	204
BsrI	ACTGG	3 cut(s)	196, 251, 475
BssECI	CCNNGG	2 cut(s)	135, 547
BssT1I	CCWWGG	2 cut(s)	135, 547
Bst4CI	ACNGT	2 cut(s)	16, 402
Bst6I	CTCTTC	1 cut(s)	42
BstAPI	GCANNNNNTGC	2 cut(s)	105, 310
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	2 cut(s)	23, 237
BstDSI	CCRYGG	1 cut(s)	547
BstF5I	GGATG	2 cut(s)	344, 490
BstMAI	GTCTC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 105, 114, 310
BstSCI	CCNGG	1 cut(s)	282
BstSLI	GKGCMC	2 cut(s)	101, 250
BstV2I	GAAGAC	2 cut(s)	222, 396
BsuRI	GGCC	2 cut(s)	179, 546
BtgI	CCRYGG	1 cut(s)	547
BtsCI	GGATG	2 cut(s)	344, 490
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	110
CaiI	CAGNNNCTG	1 cut(s)	272
CciI	TCATGA	2 cut(s)	298, 514
Csp6I	GTAC	3 cut(s)	17, 199, 277
CviAII	CATG	7 cut(s)	9, 148, 299, 308, 419, 515, 548
CviQI	GTAC	3 cut(s)	17, 199, 277
DdeI	CTNAG	2 cut(s)	23, 237
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco130I	CCWWGG	2 cut(s)	135, 547
EcoT14I	CCWWGG	2 cut(s)	135, 547
ErhI	CCWWGG	2 cut(s)	135, 547
FaeI	CATG	7 cut(s)	12, 151, 302, 311, 422, 518, 551
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FatI	CATG	7 cut(s)	8, 147, 298, 307, 418, 514, 547
FokI	GGATG	2 cut(s)	331, 497
FspBI	CTAG	2 cut(s)	360, 542
HaeIII	GGCC	2 cut(s)	179, 546
HapII	CCGG	2 cut(s)	72, 284
Hin1II	CATG	7 cut(s)	12, 151, 302, 311, 422, 518, 551
HinfI	GANTC	5 cut(s)	5, 350, 386, 412, 511
HpaII	CCGG	2 cut(s)	72, 284
HphI	GGTGA	2 cut(s)	112, 149
Hpy166II	GTNNAC	4 cut(s)	99, 248, 256, 424
Hpy188I	TCNGA	3 cut(s)	330, 349, 497
Hpy188III	TCNNGA	3 cut(s)	190, 299, 515
Hpy8I	GTNNAC	4 cut(s)	99, 248, 256, 424
HpyCH4III	ACNGT	2 cut(s)	16, 402
HpyCH4V	TGCA	6 cut(s)	80, 99, 108, 219, 248, 313
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 105, 114, 310
HpyF3I	CTNAG	2 cut(s)	23, 237
Hsp92II	CATG	7 cut(s)	12, 151, 302, 311, 422, 518, 551
LmnI	GCTCC	2 cut(s)	209, 532
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	2 cut(s)	360, 542
MbiI	CCGCTC	1 cut(s)	204
MboII	GAAGA	5 cut(s)	59, 222, 225, 396, 530
MhlI	GDGCHC	2 cut(s)	101, 250
MluCI	AATT	2 cut(s)	67, 445
MlyI	GAGTC	2 cut(s)	359, 421
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	8 cut(s)	32, 107, 134, 205, 450, 475, 501, 545
MslI	CAYNNNNRTG	1 cut(s)	224
MspI	CCGG	2 cut(s)	72, 284
MspR9I	CCNGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	4 cut(s)	96, 105, 114, 310
NciI	CCSGG	1 cut(s)	284
NcoI	CCATGG	1 cut(s)	547
NlaIII	CATG	7 cut(s)	12, 151, 302, 311, 422, 518, 551
NlaIV	GGNNCC	2 cut(s)	373, 442
PagI	TCATGA	2 cut(s)	298, 514
PfeI	GAWTC	3 cut(s)	5, 386, 511
PflMI	CCANNNNNTGG	1 cut(s)	272
PleI	GAGTC	2 cut(s)	358, 420
PpsI	GAGTC	2 cut(s)	358, 420
PspN4I	GGNNCC	2 cut(s)	373, 442
PstNI	CAGNNNCTG	1 cut(s)	272
RsaI	GTAC	3 cut(s)	18, 200, 278
RsaNI	GTAC	3 cut(s)	17, 199, 277
RseI	CAYNNNNRTG	1 cut(s)	224
SchI	GAGTC	2 cut(s)	359, 421
ScrFI	CCNGG	1 cut(s)	284
SduI	GDGCHC	2 cut(s)	101, 250
SetI	ASST	6 cut(s)	92, 271, 365, 455, 461, 537
SfaNI	GCATC	1 cut(s)	313
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	2 cut(s)	129, 454
SmoI	CTYRAG	2 cut(s)	129, 454
Sse9I	AATT	2 cut(s)	67, 445
SsiI	CCGC	2 cut(s)	160, 202
SspMI	CTAG	2 cut(s)	360, 542
StyD4I	CCNGG	1 cut(s)	282
StyI	CCWWGG	2 cut(s)	135, 547
TaaI	ACNGT	2 cut(s)	16, 402
TaqI	TCGA	2 cut(s)	191, 353
TasI	AATT	2 cut(s)	67, 445
TfiI	GAWTC	3 cut(s)	5, 386, 511
TscAI	CASTG	1 cut(s)	250
TspDTI	ATGAA	3 cut(s)	60, 164, 531
TspRI	CASTG	1 cut(s)	250
Van91I	CCANNNNNTGG	1 cut(s)	272
VneI	GTGCAC	2 cut(s)	97, 246
XspI	CTAG	2 cut(s)	360, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.