Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0013418

Physical Location & Seq

Genomic Coordinates Forward (+)

19381784 .. 19382359

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1209600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGAATCTTGGAGACCAAGAAGCCCGGATACGAGTTCAAGCGATGAAGATCAAGTCAGAGATGACGATCATGATTCAGGTGCTACAACAGTGAAACGAAGCTACGAATGCACATTTTGCAAGAGGGGGTTTACCAACGCTCAAGCCTTGGGAGGTCACATGAACATCCACAGGAAAGACCGAGCCAAAGCGAAGCAACTCATCTCAGGTACATCATCACTTAATTCAAACCACTACTCGAATGAGGATCAATACATATCCATGAGTACTTCTCATCATCATCAATATAGTAGTGCACCAATTCCAAGCCAGGGGGCTTCTGGGTACTACCCAGTTTTGGATCAGATGAATTACCAAATGTATTTTCAGCCAAATGGGTCTAACCCTAGAATCCCATACGGTTATGATCATGATGATTCATCAGTTGGGTCAAGGTCACAGTCTTTGGGTATGAACCAAGAACTTTGGGGTGCAAATTTAAGCTTGCGGTTGGAGGATGATGAATTCAGAAGGGGTGTGAGGAGTAATGATGAAGTGGATTTGGAACTTCGACTTGGGAATGGTCGGTTTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051252 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2000278 GO:2000573 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

21.62

Weight (kDa)

5.71

Isoelectric Point (pI)

57.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53820 AT5G43540
fragaria_vesca	FvH4_4g03020
malus_domestica	MD13G1209600.v1.1 MD16G1212300.v1.1
prunus_persica	Prupe.1G034200_v2.0.a1
pyrus_communis	pycom13g18170 pycom16g17830
rosa_chinensis	RchiOBHm_Chr4g0391211
rosa_laevigata	RLG00000009877
rosa_multiflora	Rmu_sc0000040.1_g000014
rosa_roxburghii	Rroxscaffold_5G00337000
rosa_rugosa	Rorug03G0335200
rosa_samantha	Rh4AG035900 Rh4BG030900 Rh4CG039200 Rh4DG033600
rosa_wichuraiana	Rw4G002820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	487
AclWI	GGATC	2 cut(s)	255, 348
AcsI	RAATTY	2 cut(s)	475, 503
AfaI	GTAC	3 cut(s)	211, 268, 326
AfiI	CCNNNNNNNGG	2 cut(s)	311, 337
AgsI	TTSAA	2 cut(s)	39, 228
AjnI	CCWGG	1 cut(s)	309
AjuI	GAANNNNNNNTTGG	4 cut(s)	348, 380, 537, 569
AluBI	AGCT	2 cut(s)	102, 483
AluI	AGCT	2 cut(s)	102, 483
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	7
Alw44I	GTGCAC	1 cut(s)	294
AlwI	GGATC	2 cut(s)	255, 348
ApaLI	GTGCAC	1 cut(s)	294
ApoI	RAATTY	2 cut(s)	475, 503
AsuC2I	CCSGG	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	298
BarI	GAAGNNNNNNTAC	2 cut(s)	13, 45
Bbv12I	GWGCWC	1 cut(s)	298
BciT130I	CCWGG	1 cut(s)	311
BciVI	GTATCC	1 cut(s)	22
BclI	TGATCA	1 cut(s)	406
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	7
BfaI	CTAG	1 cut(s)	387
BfuI	GTATCC	1 cut(s)	22
BmcAI	AGTACT	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	26, 311
BmrFI	CCNGG	2 cut(s)	26, 311
BmrI	ACTGGG	1 cut(s)	326
BmuI	ACTGGG	1 cut(s)	326
BplI	GAGNNNNNCTC	2 cut(s)	256, 288
BpuEI	CTTGAG	1 cut(s)	126
BpuMI	CCSGG	1 cut(s)	26
BsaBI	GATNNNNATC	2 cut(s)	48, 66
BsaI	GGTCTC	1 cut(s)	7
BsaJI	CCNNGG	2 cut(s)	147, 310
Bsc4I	CCNNNNNNNGG	2 cut(s)	311, 337
Bse1I	ACTGG	1 cut(s)	332
Bse8I	GATNNNNATC	2 cut(s)	48, 66
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	2 cut(s)	147, 310
BseGI	GGATG	2 cut(s)	165, 502
BseJI	GATNNNNATC	2 cut(s)	48, 66
BseLI	CCNNNNNNNGG	2 cut(s)	311, 337
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	1 cut(s)	535
BseSI	GKGCMC	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	2 cut(s)	311, 337
BsmAI	GTCTC	1 cut(s)	7
BsmI	GAATGC	1 cut(s)	113
Bso31I	GGTCTC	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	5 cut(s)	49, 67, 247, 340, 406
BspACI	CCGC	1 cut(s)	487
BspCNI	CTCAG	1 cut(s)	218
BspHI	TCATGA	2 cut(s)	70, 409
BspPI	GGATC	2 cut(s)	255, 348
BspTNI	GGTCTC	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	2 cut(s)	147, 310
BssMI	GATC	5 cut(s)	49, 67, 247, 340, 406
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	3 cut(s)	91, 401, 441
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	485
BstDEI	CTNAG	1 cut(s)	205
BstF5I	GGATG	2 cut(s)	165, 502
BstKTI	GATC	5 cut(s)	52, 70, 250, 343, 409
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	5 cut(s)	49, 67, 247, 340, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 117
BstNI	CCWGG	1 cut(s)	311
BstSCI	CCNGG	2 cut(s)	24, 309
BstSLI	GKGCMC	1 cut(s)	298
BsuI	GTATCC	1 cut(s)	22
BtgZI	GCGATG	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	165, 502
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	485
CciI	TCATGA	2 cut(s)	70, 409
Csp6I	GTAC	3 cut(s)	210, 267, 325
CviAII	CATG	4 cut(s)	71, 160, 262, 410
CviJI	RGCY	8 cut(s)	24, 102, 146, 185, 309, 317, 370, 483
CviKI_1	RGCY	8 cut(s)	24, 102, 146, 185, 309, 317, 370, 483
CviQI	GTAC	3 cut(s)	210, 267, 325
DdeI	CTNAG	1 cut(s)	205
DpnI	GATC	5 cut(s)	51, 69, 249, 342, 408
DpnII	GATC	5 cut(s)	49, 67, 247, 340, 406
Eco130I	CCWWGG	1 cut(s)	147
Eco31I	GGTCTC	1 cut(s)	7
EcoRI	GAATTC	1 cut(s)	503
EcoRII	CCWGG	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	4 cut(s)	74, 163, 265, 413
FatI	CATG	4 cut(s)	70, 159, 261, 409
FbaI	TGATCA	1 cut(s)	406
FokI	GGATG	2 cut(s)	152, 509
FspBI	CTAG	1 cut(s)	387
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	4 cut(s)	74, 163, 265, 413
HindIII	AAGCTT	1 cut(s)	481
HinfI	GANTC	4 cut(s)	5, 74, 390, 416
HpaII	CCGG	1 cut(s)	26
Hpy166II	GTNNAC	2 cut(s)	132, 296
Hpy188I	TCNGA	3 cut(s)	59, 345, 509
Hpy188III	TCNNGA	2 cut(s)	71, 410
Hpy8I	GTNNAC	2 cut(s)	132, 296
HpyAV	CCTTC	1 cut(s)	504
HpyCH4III	ACNGT	3 cut(s)	91, 401, 441
HpyCH4V	TGCA	4 cut(s)	111, 120, 296, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 117
HpyF3I	CTNAG	1 cut(s)	205
Hsp92II	CATG	4 cut(s)	74, 163, 265, 413
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	5 cut(s)	49, 67, 247, 340, 406
LpnPI	CCDG	8 cut(s)	39, 63, 157, 192, 296, 306, 323, 345
MaeI	CTAG	1 cut(s)	387
MaeIII	GTNAC	2 cut(s)	155, 435
MalI	GATC	5 cut(s)	51, 69, 249, 342, 408
MboI	GATC	5 cut(s)	49, 67, 247, 340, 406
MboII	GAAGA	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	5 cut(s)	223, 300, 349, 475, 503
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	5 cut(s)	117, 146, 238, 487, 513
MseI	TTAA	2 cut(s)	222, 479
MslI	CAYNNNNRTG	1 cut(s)	260
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	2 cut(s)	26, 311
Mva1269I	GAATGC	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	2 cut(s)	108, 117
NciI	CCSGG	1 cut(s)	26
NdeII	GATC	5 cut(s)	49, 67, 247, 340, 406
NlaIII	CATG	4 cut(s)	74, 163, 265, 413
NmuCI	GTSAC	2 cut(s)	155, 435
PagI	TCATGA	2 cut(s)	70, 409
PctI	GAATGC	1 cut(s)	113
PfeI	GAWTC	4 cut(s)	5, 74, 390, 416
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
RsaI	GTAC	3 cut(s)	211, 268, 326
RsaNI	GTAC	3 cut(s)	210, 267, 325
RseI	CAYNNNNRTG	1 cut(s)	260
SaqAI	TTAA	2 cut(s)	222, 479
Sau3AI	GATC	5 cut(s)	49, 67, 247, 340, 406
ScaI	AGTACT	1 cut(s)	268
ScrFI	CCNGG	2 cut(s)	26, 311
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	6 cut(s)	82, 104, 157, 211, 437, 485
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	5 cut(s)	223, 300, 349, 475, 503
SsiI	CCGC	1 cut(s)	487
SspMI	CTAG	1 cut(s)	387
StyD4I	CCNGG	2 cut(s)	24, 309
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	3 cut(s)	91, 401, 441
TaqI	TCGA	2 cut(s)	239, 550
TaqII	GACCGA	1 cut(s)	195
TasI	AATT	5 cut(s)	223, 300, 349, 475, 503
TatI	WGTACW	1 cut(s)	266
TfiI	GAWTC	4 cut(s)	5, 74, 390, 416
Tru1I	TTAA	2 cut(s)	222, 479
Tru9I	TTAA	2 cut(s)	222, 479
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	2 cut(s)	155, 435
Tsp45I	GTSAC	2 cut(s)	155, 435
TspDTI	ATGAA	7 cut(s)	60, 176, 362, 408, 467, 516, 546
TspRI	CASTG	1 cut(s)	96
VneI	GTGCAC	1 cut(s)	294
XapI	RAATTY	2 cut(s)	475, 503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	317
XspI	CTAG	1 cut(s)	387
ZrmI	AGTACT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.