Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0013418

Physical Location & Seq

Genomic Coordinates Forward (+)

20117741 .. 20118310

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1212300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGAATCTTGGAGACCAAGAACCCCGCAGACGAGCTCAAGTGATGAAGATCAAGTCAGATCAGATGATCACAATTCAGGTGCTGCAACAGTGAAACGAAGCTACGAATGCACGTTTTGCAAGAGGGGGTTTACCAATGCTCAAGCCTTGGGAGGTCACATGAACATCCACAGGAAAGACCGAGTCAAACCGATGCAACACATCTCAGGTAAATCATCACTTAATGCAAACCACTACTCGAATGAGGATCAATACATATCCATGAGTACTTCTCATCATCATCATCAATATAGTAGCGTACCACTTTCAAGCCAGGGGGTTTCTGGGTACTACCCAGTTTTCGATCAGATGAATTACCAAAGGTATTTTCAGCCAACTGGGTCTAACCCTAGAATCCCATACGGTTATGATCTTGACGATTCATCAGTTGGGTCAAGGTCACACTCTTTGGGTATGAACCAAGAACTTTGGGGTACGAATTTGAGCTTGCAGTTGGAGGATGATGAATTCAGAAGGGGTGTGAGGAGTAACGATGAAGTGGATTTGGAACTTCGACTTGGGCATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051252 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2000278 GO:2000573 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

21.5

Weight (kDa)

6.24

Isoelectric Point (pI)

55.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53820 AT5G43540
fragaria_vesca	FvH4_4g03020
malus_domestica	MD13G1209600.v1.1 MD16G1212300.v1.1
prunus_persica	Prupe.1G034200_v2.0.a1
pyrus_communis	pycom13g18170 pycom16g17830
rosa_chinensis	RchiOBHm_Chr4g0391211
rosa_laevigata	RLG00000009877
rosa_multiflora	Rmu_sc0000040.1_g000014
rosa_roxburghii	Rroxscaffold_5G00337000
rosa_rugosa	Rorug03G0335200
rosa_samantha	Rh4AG035900 Rh4BG030900 Rh4CG039200 Rh4DG033600
rosa_wichuraiana	Rw4G002820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	26
AclWI	GGATC	1 cut(s)	255
AcsI	RAATTY	2 cut(s)	478, 506
AfaI	GTAC	4 cut(s)	268, 300, 329, 475
AgsI	TTSAA	1 cut(s)	309
AjnI	CCWGG	1 cut(s)	312
AjuI	GAANNNNNNNTTGG	3 cut(s)	351, 383, 540
AluBI	AGCT	3 cut(s)	36, 102, 486
AluI	AGCT	3 cut(s)	36, 102, 486
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	7
AlwI	GGATC	1 cut(s)	255
AlwNI	CAGNNNCTG	1 cut(s)	83
ApeKI	GCWGC	1 cut(s)	83
ApoI	RAATTY	2 cut(s)	478, 506
BanII	GRGCYC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	314
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	7
BfaI	CTAG	1 cut(s)	390
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
BmcAI	AGTACT	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	314
BmrFI	CCNGG	1 cut(s)	314
BmrI	ACTGGG	2 cut(s)	329, 387
BmsI	GCATC	1 cut(s)	183
BmuI	ACTGGG	2 cut(s)	329, 387
BplI	GAGNNNNNCTC	2 cut(s)	256, 288
BpuEI	CTTGAG	2 cut(s)	22, 126
BsaBI	GATNNNNATC	1 cut(s)	48
BsaI	GGTCTC	1 cut(s)	7
BsaJI	CCNNGG	2 cut(s)	147, 313
Bse1I	ACTGG	2 cut(s)	335, 382
Bse8I	GATNNNNATC	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	147, 313
BseGI	GGATG	2 cut(s)	165, 505
BseJI	GATNNNNATC	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	2 cut(s)	335, 382
BseRI	GAGGAG	1 cut(s)	538
BseXI	GCAGC	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	7
BsmI	GAATGC	1 cut(s)	113
Bso31I	GGTCTC	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	6 cut(s)	49, 59, 67, 247, 343, 409
BspACI	CCGC	1 cut(s)	26
BspCNI	CTCAG	1 cut(s)	218
BspPI	GGATC	1 cut(s)	255
BspTNI	GGTCTC	1 cut(s)	7
BsrI	ACTGG	2 cut(s)	335, 382
BssECI	CCNNGG	2 cut(s)	147, 313
BssMI	GATC	6 cut(s)	49, 59, 67, 247, 343, 409
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	2 cut(s)	91, 404
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	488
BstDEI	CTNAG	1 cut(s)	205
BstF5I	GGATG	2 cut(s)	165, 505
BstKTI	GATC	6 cut(s)	52, 62, 70, 250, 346, 412
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	6 cut(s)	49, 59, 67, 247, 343, 409
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 117
BstNI	CCWGG	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	70
BtsCI	GGATG	2 cut(s)	165, 505
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	488
CaiI	CAGNNNCTG	1 cut(s)	83
Csp6I	GTAC	4 cut(s)	267, 299, 328, 474
CviAII	CATG	3 cut(s)	160, 262, 563
CviJI	RGCY	6 cut(s)	36, 102, 146, 312, 373, 486
CviKI_1	RGCY	6 cut(s)	36, 102, 146, 312, 373, 486
CviQI	GTAC	4 cut(s)	267, 299, 328, 474
DdeI	CTNAG	1 cut(s)	205
DpnI	GATC	6 cut(s)	51, 61, 69, 249, 345, 411
DpnII	GATC	6 cut(s)	49, 59, 67, 247, 343, 409
Ecl136II	GAGCTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	38
Eco31I	GGTCTC	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	36
EcoRI	GAATTC	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	3 cut(s)	163, 265, 566
FaiI	YATR	8 cut(s)	161, 257, 263, 291, 400, 408, 455, 564
FatI	CATG	3 cut(s)	159, 261, 562
FauI	CCCGC	1 cut(s)	33
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	2 cut(s)	152, 512
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	1 cut(s)	390
GluI	GCNGC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	163, 265, 566
HinfI	GANTC	4 cut(s)	5, 183, 393, 419
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	4 cut(s)	59, 64, 348, 512
Hpy188III	TCNNGA	1 cut(s)	413
Hpy8I	GTNNAC	1 cut(s)	132
HpyAV	CCTTC	1 cut(s)	507
HpyCH4III	ACNGT	2 cut(s)	91, 404
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	6 cut(s)	86, 111, 120, 196, 227, 490
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 117
HpyF3I	CTNAG	1 cut(s)	205
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	3 cut(s)	163, 265, 566
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	6 cut(s)	49, 59, 67, 247, 343, 409
LpnPI	CCDG	8 cut(s)	63, 157, 192, 299, 309, 326, 348, 363
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	3 cut(s)	155, 438, 527
MalI	GATC	6 cut(s)	51, 61, 69, 249, 345, 411
MboI	GATC	6 cut(s)	49, 59, 67, 247, 343, 409
MboII	GAAGA	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	4 cut(s)	73, 352, 478, 506
MlyI	GAGTC	1 cut(s)	192
MmeI	TCCRAC	1 cut(s)	474
MnlI	CCTC	5 cut(s)	117, 146, 238, 490, 516
MseI	TTAA	2 cut(s)	222, 568
MslI	CAYNNNNRTG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	314
Mva1269I	GAATGC	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	2 cut(s)	108, 117
NdeII	GATC	6 cut(s)	49, 59, 67, 247, 343, 409
NlaIII	CATG	3 cut(s)	163, 265, 566
NmuCI	GTSAC	2 cut(s)	155, 438
PctI	GAATGC	1 cut(s)	113
PfeI	GAWTC	3 cut(s)	5, 393, 419
PflFI	GACNNNGTC	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PstNI	CAGNNNCTG	1 cut(s)	83
PsyI	GACNNNGTC	1 cut(s)	182
RsaI	GTAC	4 cut(s)	268, 300, 329, 475
RsaNI	GTAC	4 cut(s)	267, 299, 328, 474
RseI	CAYNNNNRTG	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	222, 568
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	6 cut(s)	49, 59, 67, 247, 343, 409
ScaI	AGTACT	1 cut(s)	268
SchI	GAGTC	1 cut(s)	192
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	9 cut(s)	38, 82, 104, 116, 157, 211, 365, 440, 488
SfaNI	GCATC	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	2 cut(s)	37, 141
SmoI	CTYRAG	2 cut(s)	37, 141
Sse9I	AATT	4 cut(s)	73, 352, 478, 506
SsiI	CCGC	1 cut(s)	26
SspMI	CTAG	1 cut(s)	390
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	312
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	91, 404
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	3 cut(s)	239, 342, 553
TaqII	GACCGA	1 cut(s)	195
TasI	AATT	4 cut(s)	73, 352, 478, 506
TatI	WGTACW	1 cut(s)	266
TfiI	GAWTC	3 cut(s)	5, 393, 419
Tru1I	TTAA	2 cut(s)	222, 568
Tru9I	TTAA	2 cut(s)	222, 568
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	2 cut(s)	155, 438
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	2 cut(s)	155, 438
TspDTI	ATGAA	7 cut(s)	60, 176, 365, 411, 470, 519, 549
TspRI	CASTG	1 cut(s)	96
Tth111I	GACNNNGTC	1 cut(s)	182
XapI	RAATTY	2 cut(s)	478, 506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XspI	CTAG	1 cut(s)	390
ZrmI	AGTACT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.