AT5G43650

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012075
Physical Location & Seq
Reverse (-)
17533130 .. 17534796
1667 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G43650.2

Sequence Viewer

Length: 744 bp
ATGGATAACTTTTTTCTAGGTTTGAGTTGTCAAGAAGAAAACAACTTCTGGGATCTAATCGTGGCCGACATCTCGGGTGATAGAAGCGTCAGTGTACCTATCAGAAGCGCCTTTAGGTCATATATGAAGGACACGGAACTGAGGATGATGTCGCCGAAGATATCTTCTTCGAAGGTGAACGTGAAGAAGAGAATGGTCAATCTTCTGAGAAAGAATTGGGAGGAGAAGAAAAATACGGTGGCTCCAGAGAAGGAAAGAAGCCGGCGACATATGTTGAAAGAAAGGACGAGAAGAGAGAAACAAAAACAGAGTTACTTAGCTCTCCATTCTCTACTACCATTTGCCACTAAGAATGACAAAAATTCGATTGTCGAAAAAGCCGTGGATGAGATTGCGAAATTACAAAGATTAAAGAAAGAACTAGTGAGAAGAATTAAAGTGATTGAGGAAAAATCAGCAAAGGATGGTCATGATGAAATGAGTGAAACAAAGGTTAGGGTTAATCTAAAAGAACCTTTGTCTGGACTAGATTCAATGCTTGAAGCGCTTCATTATCTTAAATCAATGGGAACAAAACTGAAAACAGTCCATGCCAATTTCTCTCCTCAAGAGTTTTCTGCGACCATGACCATCGAGACTCAGATTAGAGGAGAGGAGGTTGAAAAGAGAGTGGAAAGAAGACTCCAGGAAACTGAATGGAAACTTCTCTTTCTCCCAGAAGCTTCCTTTTACAAAGACTACTAA

Protein Analysis

247

Amino Acids

29.01

Weight (kDa)

9.57

Isoelectric Point (pI)

62.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 87 - 135 7.9e-07 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43650 AT5G43650
fragaria_vesca FvH4_4g02610 FvH4_4g02610
malus_domestica MD13G1206900.v1.1 MD16G1208400.v1.1
prunus_persica Prupe.1G030500_v2.0.a1
pyrus_communis pycom13g17920 pycom16g17560
rosa_chinensis RchiOBHm_Chr4g0390311
rosa_laevigata RLG00000009925
rosa_multiflora Rmu_sc0010889.1_g000004
rosa_roxburghii Rroxscaffold_5G00336420
rosa_rugosa Rorug03G0330100
rosa_samantha Rh4AG031600 Rh4BG025600 Rh4CG034700 Rh4DG026700
rosa_wichuraiana Rw4G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 60
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 361
AfaI GTAC 1 cut(s) 96
AfeI AGCGCT 1 cut(s) 546
AfiI CCNNNNNNNGG 1 cut(s) 521
AgsI TTSAA 4 cut(s) 277, 534, 542, 662
AhlI ACTAGT 1 cut(s) 421
AjnI CCWGG 1 cut(s) 684
AluBI AGCT 2 cut(s) 320, 722
AluI AGCT 2 cut(s) 320, 722
Alw26I GTCTC 1 cut(s) 629
AlwI GGATC 1 cut(s) 60
Ama87I CYCGRG 1 cut(s) 73
Aor51HI AGCGCT 1 cut(s) 546
AoxI GGCC 1 cut(s) 63
ApoI RAATTY 1 cut(s) 361
Asp700I GAANNNNTTC 1 cut(s) 546
AspLEI GCGC 2 cut(s) 110, 547
AsuHPI GGTGA 2 cut(s) 89, 187
AsuII TTCGAA 1 cut(s) 170
AvaI CYCGRG 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 685
BccI CCATC 2 cut(s) 458, 638
BceAI ACGGC 1 cut(s) 365
BciT130I CCWGG 1 cut(s) 686
BcoDI GTCTC 1 cut(s) 629
BcuI ACTAGT 1 cut(s) 421
BfaI CTAG 3 cut(s) 17, 422, 527
BfoI RGCGCY 2 cut(s) 111, 548
Bme1390I CCNGG 1 cut(s) 686
BmeT110I CYCGRG 1 cut(s) 73
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 686
BpiI GAAGAC 1 cut(s) 685
BpmI CTGGAG 2 cut(s) 228, 668
Bpu14I TTCGAA 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 591
BsaJI CCNNGG 1 cut(s) 381
BsaXI ACNNNNNCTCC 4 cut(s) 226, 256, 642, 672
Bsc4I CCNNNNNNNGG 1 cut(s) 521
Bse118I RCCGGY 1 cut(s) 261
BseBI CCWGG 1 cut(s) 686
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 3 cut(s) 150, 391, 469
BseLI CCNNNNNNNGG 1 cut(s) 521
BseMII CTCAG 3 cut(s) 131, 197, 653
BseRI GAGGAG 4 cut(s) 236, 594, 663, 668
BshFI GGCC 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 73
BsiSI CCGG 1 cut(s) 262
BslI CCNNNNNNNGG 1 cut(s) 521
BsmAI GTCTC 1 cut(s) 629
BsnI GGCC 1 cut(s) 65
BsoBI CYCGRG 1 cut(s) 73
Bsp119I TTCGAA 1 cut(s) 170
Bsp143I GATC 1 cut(s) 52
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 3 cut(s) 132, 198, 652
BspHI TCATGA 1 cut(s) 469
BspLI GGNNCC 1 cut(s) 243
BspPI GGATC 1 cut(s) 60
BspT104I TTCGAA 1 cut(s) 170
BsrFI RCCGGY 1 cut(s) 261
BssAI RCCGGY 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 686
Bst4CI ACNGT 2 cut(s) 238, 586
Bst6I CTCTTC 2 cut(s) 182, 286
BstBI TTCGAA 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 263
BstDEI CTNAG 5 cut(s) 140, 206, 316, 348, 639
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 3 cut(s) 150, 391, 469
BstH2I RGCGCY 2 cut(s) 111, 548
BstHHI GCGC 2 cut(s) 110, 547
BstKTI GATC 1 cut(s) 55
BstMAI GTCTC 1 cut(s) 629
BstMBI GATC 1 cut(s) 52
BstMWI GCNNNNNNNGC 1 cut(s) 544
BstNI CCWGG 1 cut(s) 686
BstSCI CCNGG 1 cut(s) 684
BstV2I GAAGAC 1 cut(s) 685
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 1 cut(s) 65
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 3 cut(s) 150, 391, 469
BtsIMutI CAGTG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 263
CciI TCATGA 1 cut(s) 469
CfoI GCGC 2 cut(s) 110, 547
Cfr10I RCCGGY 1 cut(s) 261
CseI GACGC 1 cut(s) 76
Csp6I GTAC 1 cut(s) 95
CviAII CATG 3 cut(s) 470, 590, 625
CviJI RGCY 6 cut(s) 65, 242, 261, 320, 380, 722
CviKI_1 RGCY 6 cut(s) 65, 242, 261, 320, 380, 722
CviQI GTAC 1 cut(s) 95
DdeI CTNAG 5 cut(s) 140, 206, 316, 348, 639
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 2 cut(s) 182, 286
EarI CTCTTC 2 cut(s) 182, 286
Eco32I GATATC 1 cut(s) 162
Eco47III AGCGCT 1 cut(s) 546
Eco88I CYCGRG 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 684
EcoRV GATATC 1 cut(s) 162
FaeI CATG 3 cut(s) 473, 593, 628
FaiI YATR 8 cut(s) 121, 123, 125, 270, 272, 471, 591, 626
FatI CATG 3 cut(s) 469, 589, 624
FauNDI CATATG 1 cut(s) 270
FokI GGATG 3 cut(s) 157, 398, 476
FspBI CTAG 3 cut(s) 17, 422, 527
GlaI GCGC 2 cut(s) 109, 546
GsuI CTGGAG 2 cut(s) 228, 668
HaeII RGCGCY 2 cut(s) 111, 548
HaeIII GGCC 1 cut(s) 65
HapII CCGG 1 cut(s) 262
HgaI GACGC 1 cut(s) 76
HhaI GCGC 2 cut(s) 110, 547
Hin1II CATG 3 cut(s) 473, 593, 628
Hin6I GCGC 2 cut(s) 108, 545
HinP1I GCGC 2 cut(s) 108, 545
HindIII AAGCTT 1 cut(s) 720
HinfI GANTC 3 cut(s) 530, 637, 681
HpaII CCGG 1 cut(s) 262
HphI GGTGA 2 cut(s) 89, 187
Hpy166II GTNNAC 2 cut(s) 95, 178
Hpy188I TCNGA 3 cut(s) 104, 207, 642
Hpy188III TCNNGA 6 cut(s) 32, 245, 470, 522, 608, 634
Hpy8I GTNNAC 2 cut(s) 95, 178
HpyAV CCTTC 3 cut(s) 121, 166, 244
HpyCH4III ACNGT 2 cut(s) 238, 586
HpyCH4IV ACGT 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 1 cut(s) 544
HpyF3I CTNAG 5 cut(s) 140, 206, 316, 348, 639
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 3 cut(s) 473, 593, 628
HspAI GCGC 2 cut(s) 108, 545
KroI GCCGGC 1 cut(s) 261
KroNI GCCGGC 1 cut(s) 263
Kzo9I GATC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 7 cut(s) 34, 258, 275, 507, 671, 698, 729
MaeI CTAG 3 cut(s) 17, 422, 527
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 311
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MflI RGATCY 1 cut(s) 52
MluCI AATT 5 cut(s) 214, 361, 398, 432, 595
MlyI GAGTC 2 cut(s) 631, 675
MnlI CCTC 7 cut(s) 135, 214, 439, 615, 641, 646, 649
MroNI GCCGGC 1 cut(s) 261
MroXI GAANNNNTTC 1 cut(s) 546
MseI TTAA 4 cut(s) 410, 435, 501, 558
MspI CCGG 1 cut(s) 262
MspR9I CCNGG 1 cut(s) 686
MvaI CCWGG 1 cut(s) 686
MwoI GCNNNNNNNGC 1 cut(s) 544
NaeI GCCGGC 1 cut(s) 263
NdeI CATATG 1 cut(s) 270
NdeII GATC 1 cut(s) 52
NgoMIV GCCGGC 1 cut(s) 261
NlaIII CATG 3 cut(s) 473, 593, 628
NlaIV GGNNCC 1 cut(s) 243
NspV TTCGAA 1 cut(s) 170
PagI TCATGA 1 cut(s) 469
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PdiI GCCGGC 1 cut(s) 263
PdmI GAANNNNTTC 1 cut(s) 546
PfeI GAWTC 1 cut(s) 530
PfoI TCCNGGA 1 cut(s) 684
PleI GAGTC 2 cut(s) 631, 675
PpsI GAGTC 2 cut(s) 631, 675
Psp6I CCWGG 1 cut(s) 684
PspGI CCWGG 1 cut(s) 684
PspN4I GGNNCC 1 cut(s) 243
PsuI RGATCY 1 cut(s) 52
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
SaqAI TTAA 4 cut(s) 410, 435, 501, 558
Sau3AI GATC 1 cut(s) 52
SchI GAGTC 2 cut(s) 631, 675
ScrFI CCNGG 1 cut(s) 686
SfuI TTCGAA 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 606
SmoI CTYRAG 1 cut(s) 606
SpeI ACTAGT 1 cut(s) 421
Sse9I AATT 5 cut(s) 214, 361, 398, 432, 595
SspMI CTAG 3 cut(s) 17, 422, 527
StyD4I CCNGG 1 cut(s) 684
TaaI ACNGT 2 cut(s) 238, 586
TaiI ACGT 1 cut(s) 183
TaqI TCGA 4 cut(s) 170, 365, 372, 633
TasI AATT 5 cut(s) 214, 361, 398, 432, 595
TfiI GAWTC 1 cut(s) 530
Tru1I TTAA 4 cut(s) 410, 435, 501, 558
Tru9I TTAA 4 cut(s) 410, 435, 501, 558
TscAI CASTG 1 cut(s) 97
TspDTI ATGAA 3 cut(s) 140, 489, 539
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 1 cut(s) 97
XapI RAATTY 1 cut(s) 361
XmnI GAANNNNTTC 1 cut(s) 546
XspI CTAG 3 cut(s) 17, 422, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.