RLG00000009925

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012075
Physical Location & Seq
Reverse (-)
60292249 .. 60293762
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009925

Sequence Viewer

Length: 702 bp
ATGGACCGGTTTATTTTGGAGGCATTGGAGGGTGATTTCTTATGGTATGAAAATCCTCCGGTACTGAATCCAAGCGCCTTTGTGCCTTACACTGAAGCTCCTGAGTCAGGCCAGCCTACTAATTCTGGGTCTAATTCCATGAACATGAATAAGAGGATGGTGCGGTTCTTGATGAAGAGTTATCCACCTCCGACGGCTAGGATCAAAATCGGAGAGAAGGAGCAAGGCAAGGACAAGGGTTTTCGCCACATGATCAATGAGCGAATGAGGAGGGAGAAGCAGAAGCAGTGCTACTTTGACTTGCATTCTTTGCTGCCTAATGGAACCAAGAGTGATAAGAATTGGATTGTGCAAATGGCGACCACGAACATTCAGCAGCTGGAGAGGCATAAGGAGGAGCTGAGAAAGCGGAACATGGAGTTCGAATCGATTTTGGGCAAGGAGAGATCAGTGAAGTGGAGAAGGATTAGATTGAGGGTAGCCAATCCTACTTCAGGAGTTGATTCTATGCTGGAGGTTCTTAAGTGCTTGAAAAGTTTGGGATTAAAGACCAGAAATATTCAATCATTTTTCTCTCCGGATGAGTTTTCTGCAGAAGTGGAAATTGAATCCAAGATCGAAGCCACAGTGGTAGAAGCCGCAATGCAAGAAACACTATATGAAGTCCAGAGGAAACTTCTTTCTTCATTTCCAGGAAGGTAA

Protein Analysis

234

Amino Acids

27.11

Weight (kDa)

9.37

Isoelectric Point (pI)

51.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 82 - 128 1.2e-07 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43650 AT5G43650
fragaria_vesca FvH4_4g02610 FvH4_4g02610
malus_domestica MD13G1206900.v1.1 MD16G1208400.v1.1
prunus_persica Prupe.1G030500_v2.0.a1
pyrus_communis pycom13g17920 pycom16g17560
rosa_chinensis RchiOBHm_Chr4g0390311
rosa_laevigata RLG00000009925
rosa_multiflora Rmu_sc0010889.1_g000004
rosa_roxburghii Rroxscaffold_5G00336420
rosa_rugosa Rorug03G0330100
rosa_samantha Rh4AG031600 Rh4BG025600 Rh4CG034700 Rh4DG026700
rosa_wichuraiana Rw4G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 577
AciI CCGC 3 cut(s) 163, 409, 639
AclWI GGATC 1 cut(s) 209
AcuI CTGAAG 2 cut(s) 114, 477
AfaI GTAC 1 cut(s) 63
AfiI CCNNNNNNNGG 2 cut(s) 107, 494
AflII CTTAAG 1 cut(s) 521
AgeI ACCGGT 1 cut(s) 6
AgsI TTSAA 3 cut(s) 532, 563, 608
AjnI CCWGG 1 cut(s) 691
AluBI AGCT 3 cut(s) 98, 379, 400
AluI AGCT 3 cut(s) 98, 379, 400
AlwI GGATC 1 cut(s) 209
AlwNI CAGNNNCTG 1 cut(s) 379
Aor13HI TCCGGA 1 cut(s) 577
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 2 cut(s) 313, 376
AsiGI ACCGGT 1 cut(s) 6
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 44
AsuII TTCGAA 1 cut(s) 423
AvaII GGWCC 1 cut(s) 4
BarI GAAGNNNNNNTAC 2 cut(s) 275, 307
BbvI GCAGC 2 cut(s) 300, 388
BccI CCATC 1 cut(s) 151
BceAI ACGGC 1 cut(s) 210
BciT130I CCWGG 1 cut(s) 693
BclI TGATCA 1 cut(s) 252
BfaI CTAG 1 cut(s) 198
BfmI CTRYAG 1 cut(s) 591
BfoI RGCGCY 1 cut(s) 78
BfrI CTTAAG 1 cut(s) 521
BisI GCNGC 3 cut(s) 314, 377, 639
BlsI GCNGC 3 cut(s) 315, 378, 640
Bme1390I CCNGG 1 cut(s) 693
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 325
BmrFI CCNGG 1 cut(s) 693
BpmI CTGGAG 2 cut(s) 401, 533
Bpu14I TTCGAA 1 cut(s) 423
Bsa29I ATCGAT 1 cut(s) 428
BsaBI GATNNNNATC 1 cut(s) 206
BsaWI WCCGGW 3 cut(s) 6, 58, 577
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 494
Bse118I RCCGGY 1 cut(s) 6
Bse3DI GCAATG 1 cut(s) 648
Bse8I GATNNNNATC 1 cut(s) 206
BseAI TCCGGA 1 cut(s) 577
BseBI CCWGG 1 cut(s) 693
BseCI ATCGAT 1 cut(s) 428
BseGI GGATG 2 cut(s) 162, 586
BseJI GATNNNNATC 1 cut(s) 206
BseLI CCNNNNNNNGG 2 cut(s) 107, 494
BseMI GCAATG 1 cut(s) 648
BseMII CTCAG 2 cut(s) 93, 392
BseRI GAGGAG 2 cut(s) 283, 410
BseXI GCAGC 2 cut(s) 300, 388
BshFI GGCC 1 cut(s) 111
BshTI ACCGGT 1 cut(s) 6
BshVI ATCGAT 1 cut(s) 428
BsiSI CCGG 3 cut(s) 7, 59, 578
BslI CCNNNNNNNGG 2 cut(s) 107, 494
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 1 cut(s) 111
Bsp119I TTCGAA 1 cut(s) 423
Bsp13I TCCGGA 1 cut(s) 577
Bsp143I GATC 4 cut(s) 201, 252, 446, 615
BspACI CCGC 3 cut(s) 163, 409, 639
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 2 cut(s) 94, 393
BspDI ATCGAT 1 cut(s) 428
BspEI TCCGGA 1 cut(s) 577
BspLI GGNNCC 1 cut(s) 325
BspMAI CTGCAG 1 cut(s) 595
BspPI GGATC 1 cut(s) 209
BspT104I TTCGAA 1 cut(s) 423
BspTI CTTAAG 1 cut(s) 521
BsrDI GCAATG 1 cut(s) 648
BsrFI RCCGGY 1 cut(s) 6
BssAI RCCGGY 1 cut(s) 6
BssMI GATC 4 cut(s) 201, 252, 446, 615
Bst2UI CCWGG 1 cut(s) 693
Bst4CI ACNGT 1 cut(s) 628
Bst6I CTCTTC 1 cut(s) 170
BstAFI CTTAAG 1 cut(s) 521
BstAPI GCANNNNNTGC 1 cut(s) 310
BstBI TTCGAA 1 cut(s) 423
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 2 cut(s) 102, 401
BstENI CCTNNNNNAGG 2 cut(s) 105, 492
BstF5I GGATG 2 cut(s) 162, 586
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 4 cut(s) 204, 255, 449, 618
BstMBI GATC 4 cut(s) 201, 252, 446, 615
BstMWI GCNNNNNNNGC 3 cut(s) 310, 385, 406
BstNI CCWGG 1 cut(s) 693
BstSCI CCNGG 1 cut(s) 691
BstSFI CTRYAG 1 cut(s) 591
BstV1I GCAGC 2 cut(s) 300, 388
Bsu15I ATCGAT 1 cut(s) 428
BsuRI GGCC 1 cut(s) 111
BsuTUI ATCGAT 1 cut(s) 428
BtsCI GGATG 2 cut(s) 162, 586
BtsI GCAGTG 1 cut(s) 293
BtsIMutI CAGTG 4 cut(s) 90, 293, 456, 633
Cac8I GCNNGC 1 cut(s) 113
CaiI CAGNNNCTG 1 cut(s) 379
CfoI GCGC 1 cut(s) 77
Cfr10I RCCGGY 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 428
Csp6I GTAC 1 cut(s) 62
CspAI ACCGGT 1 cut(s) 6
CviAII CATG 4 cut(s) 139, 145, 250, 415
CviJI RGCY 9 cut(s) 98, 111, 115, 197, 379, 400, 482, 623, 638
CviKI_1 RGCY 9 cut(s) 98, 111, 115, 197, 379, 400, 482, 623, 638
CviQI GTAC 1 cut(s) 62
DdeI CTNAG 2 cut(s) 102, 401
DpnI GATC 4 cut(s) 203, 254, 448, 617
DpnII GATC 4 cut(s) 201, 252, 446, 615
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 2 cut(s) 114, 477
EcoNI CCTNNNNNAGG 2 cut(s) 105, 492
EcoRII CCWGG 1 cut(s) 691
FaeI CATG 4 cut(s) 142, 148, 253, 418
FatI CATG 4 cut(s) 138, 144, 249, 414
FbaI TGATCA 1 cut(s) 252
Fnu4HI GCNGC 3 cut(s) 314, 377, 639
FokI GGATG 2 cut(s) 169, 593
Fsp4HI GCNGC 3 cut(s) 314, 377, 639
FspBI CTAG 1 cut(s) 198
GlaI GCGC 1 cut(s) 76
GluI GCNGC 3 cut(s) 314, 377, 639
GsuI CTGGAG 2 cut(s) 401, 533
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 1 cut(s) 111
HapII CCGG 3 cut(s) 7, 59, 578
HhaI GCGC 1 cut(s) 77
Hin1II CATG 4 cut(s) 142, 148, 253, 418
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HinfI GANTC 5 cut(s) 67, 104, 425, 503, 608
HpaII CCGG 3 cut(s) 7, 59, 578
HphI GGTGA 1 cut(s) 44
Hpy188I TCNGA 2 cut(s) 192, 212
Hpy188III TCNNGA 5 cut(s) 101, 169, 495, 578, 667
Hpy99I CGWCG 1 cut(s) 196
HpyAV CCTTC 3 cut(s) 211, 456, 690
HpyCH4III ACNGT 1 cut(s) 628
HpyCH4V TGCA 4 cut(s) 304, 352, 593, 646
HpyF10VI GCNNNNNNNGC 3 cut(s) 310, 385, 406
HpyF3I CTNAG 2 cut(s) 102, 401
Hsp92II CATG 4 cut(s) 142, 148, 253, 418
HspAI GCGC 1 cut(s) 75
Kpn2I TCCGGA 1 cut(s) 577
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 4 cut(s) 201, 252, 446, 615
LmnI GCTCC 3 cut(s) 103, 220, 397
Lsp1109I GCAGC 2 cut(s) 300, 388
MaeI CTAG 1 cut(s) 198
MalI GATC 4 cut(s) 203, 254, 448, 617
MboI GATC 4 cut(s) 201, 252, 446, 615
MboII GAAGA 2 cut(s) 187, 675
MluCI AATT 4 cut(s) 121, 133, 340, 603
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 215
MroI TCCGGA 1 cut(s) 577
MseI TTAA 2 cut(s) 522, 545
MslI CAYNNNNRTG 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 379
MspCI CTTAAG 1 cut(s) 521
MspI CCGG 3 cut(s) 7, 59, 578
MspR9I CCNGG 1 cut(s) 693
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 1 cut(s) 693
MwoI GCNNNNNNNGC 3 cut(s) 310, 385, 406
NdeII GATC 4 cut(s) 201, 252, 446, 615
NlaIII CATG 4 cut(s) 142, 148, 253, 418
NlaIV GGNNCC 1 cut(s) 325
NspV TTCGAA 1 cut(s) 423
PctI GAATGC 1 cut(s) 304
PfeI GAWTC 4 cut(s) 67, 425, 503, 608
PfoI TCCNGGA 1 cut(s) 691
PinAI ACCGGT 1 cut(s) 6
PkrI GCNGC 3 cut(s) 315, 378, 640
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 691
PspGI CCWGG 1 cut(s) 691
PspN4I GGNNCC 1 cut(s) 325
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 595
PstNI CAGNNNCTG 1 cut(s) 379
PvuII CAGCTG 1 cut(s) 379
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
RseI CAYNNNNRTG 1 cut(s) 143
SaqAI TTAA 2 cut(s) 522, 545
SatI GCNGC 3 cut(s) 314, 377, 639
Sau3AI GATC 4 cut(s) 201, 252, 446, 615
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 1 cut(s) 693
SetI ASST 6 cut(s) 100, 190, 381, 402, 519, 701
SfcI CTRYAG 1 cut(s) 591
SfuI TTCGAA 1 cut(s) 423
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 521
SmoI CTYRAG 1 cut(s) 521
Sse9I AATT 4 cut(s) 121, 133, 340, 603
SsiI CCGC 3 cut(s) 163, 409, 639
SspI AATATT 1 cut(s) 559
SspMI CTAG 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 691
TaaI ACNGT 1 cut(s) 628
TaqI TCGA 3 cut(s) 423, 428, 618
TasI AATT 4 cut(s) 121, 133, 340, 603
TauI GCSGC 1 cut(s) 641
TfiI GAWTC 4 cut(s) 67, 425, 503, 608
Tru1I TTAA 2 cut(s) 522, 545
Tru9I TTAA 2 cut(s) 522, 545
TscAI CASTG 4 cut(s) 97, 293, 456, 633
TseI GCWGC 2 cut(s) 313, 376
TspDTI ATGAA 6 cut(s) 63, 155, 161, 188, 675, 675
TspRI CASTG 4 cut(s) 97, 293, 456, 633
Vha464I CTTAAG 1 cut(s) 521
VpaK11BI GGWCC 1 cut(s) 4
XagI CCTNNNNNAGG 2 cut(s) 105, 492
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.