FvH4_4g02610

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012075
Physical Location & Seq
Forward (+)
2354554 .. 2356408
1855 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02610.t2

Sequence Viewer

Length: 723 bp
ATGGACCAGTTTATTCGTGAAGCATTGGAGGGTGATTTCTTATGTTATGAGAATCCTCCAGTACTCATGAATCCAAGTGCCTTTGTGCCTTACAGTGATCAACGTGCTCCTCGGTTAGGCAATAAGCCTCCTTATCCTGGGTCTAATTCCATGAACGTGAGCAAGAGAATGGTGCAGTTCTTGAGGAACAGTTGTCCTTCTTCTACGGCTAAGACCGATGCTGGAGAGAAGGAGCACGGCAAGGAAAAGGGTTTTCGCCACATGATCAATGAGCGAATGAGGAGGGAGAAGCAGAAGCAGGGCTATTTTGCCTTGCATTCTCTGCTGCCGAATGGAACCAAGAGTGATAAGAACTGGATTGTGCAAGTAGCGACCACGACAATTGAGCAGCTGGAGAGACAAAAGGACGAGCTGAGAAAGCGAAACATGGAGCTTGAATCGATTTTGTGCAACCAGAGATTGGTGAAGTGGAGCAGAATTAGACTGAGGGTAGCCAATCCTACTTCTGGAGTTGATTCTATGATGGAGGTTCTTAAGTGCTTGAAAAGTTTGGGATTGAAGACCAGAAATATTCAATCCAGTTTCTCTCCCTATGAGTTTTCTGCAGAAGTGGAAATTGAATCCAAGATCGGAGGCGCAGTGGTAGAAGCTGCAATGCAAGAGACACTGCATGAAGTTGAGAGGAAACTTCTATCTTCATTTCCTCATTTACCTGGAAGGTAA

Protein Analysis

241

Amino Acids

27.43

Weight (kDa)

9.35

Isoelectric Point (pI)

42.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 86 - 132 9.9e-06 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43650 AT5G43650
fragaria_vesca FvH4_4g02610 FvH4_4g02610
malus_domestica MD13G1206900.v1.1 MD16G1208400.v1.1
prunus_persica Prupe.1G030500_v2.0.a1
pyrus_communis pycom13g17920 pycom16g17560
rosa_chinensis RchiOBHm_Chr4g0390311
rosa_laevigata RLG00000009925
rosa_multiflora Rmu_sc0010889.1_g000004
rosa_roxburghii Rroxscaffold_5G00336420
rosa_rugosa Rorug03G0330100
rosa_samantha Rh4AG031600 Rh4BG025600 Rh4CG034700 Rh4DG026700
rosa_wichuraiana Rw4G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 460
AfaI GTAC 1 cut(s) 63
AfiI CCNNNNNNNGG 4 cut(s) 116, 137, 460, 506
AflII CTTAAG 1 cut(s) 533
AgsI TTSAA 5 cut(s) 437, 544, 559, 575, 620
AjnI CCWGG 2 cut(s) 136, 712
AluBI AGCT 4 cut(s) 391, 412, 433, 650
AluI AGCT 4 cut(s) 391, 412, 433, 650
Alw21I GWGCWC 2 cut(s) 109, 237
Alw26I GTCTC 2 cut(s) 391, 656
ApeKI GCWGC 3 cut(s) 325, 388, 650
AspLEI GCGC 1 cut(s) 638
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 44, 475
AvaII GGWCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 566
Bbv12I GWGCWC 2 cut(s) 109, 237
BbvI GCAGC 3 cut(s) 312, 400, 637
BccI CCATC 1 cut(s) 517
BceAI ACGGC 2 cut(s) 222, 253
BciT130I CCWGG 2 cut(s) 138, 714
BclI TGATCA 2 cut(s) 97, 264
BcoDI GTCTC 2 cut(s) 391, 656
BfmI CTRYAG 1 cut(s) 603
BfrI CTTAAG 1 cut(s) 533
BisI GCNGC 3 cut(s) 326, 389, 651
BlsI GCNGC 3 cut(s) 327, 390, 652
BmcAI AGTACT 1 cut(s) 63
Bme1390I CCNGG 2 cut(s) 138, 714
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 337
BmrFI CCNGG 2 cut(s) 138, 714
BmsI GCATC 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 566
BpmI CTGGAG 4 cut(s) 42, 243, 413, 528
BpuEI CTTGAG 1 cut(s) 202
Bsa29I ATCGAT 1 cut(s) 440
BsaJI CCNNGG 2 cut(s) 110, 137
BsaXI ACNNNNNCTCC 2 cut(s) 624, 654
Bsc4I CCNNNNNNNGG 4 cut(s) 116, 137, 460, 506
Bse1I ACTGG 4 cut(s) 7, 59, 359, 579
Bse3DI GCAATG 1 cut(s) 660
BseBI CCWGG 2 cut(s) 138, 714
BseCI ATCGAT 1 cut(s) 440
BseDI CCNNGG 2 cut(s) 110, 137
BseLI CCNNNNNNNGG 4 cut(s) 116, 137, 460, 506
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 2 cut(s) 404, 476
BseNI ACTGG 4 cut(s) 7, 59, 359, 579
BseRI GAGGAG 2 cut(s) 99, 295
BseXI GCAGC 3 cut(s) 312, 400, 637
BsgI GTGCAG 1 cut(s) 194
BshVI ATCGAT 1 cut(s) 440
BsiHKAI GWGCWC 2 cut(s) 109, 237
BslI CCNNNNNNNGG 4 cut(s) 116, 137, 460, 506
BsmAI GTCTC 2 cut(s) 391, 656
BsmI GAATGC 1 cut(s) 316
Bsp1286I GDGCHC 2 cut(s) 109, 237
Bsp143I GATC 3 cut(s) 97, 264, 627
BspCNI CTCAG 2 cut(s) 405, 477
BspDI ATCGAT 1 cut(s) 440
BspHI TCATGA 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 337
BspMAI CTGCAG 1 cut(s) 607
BspTI CTTAAG 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 660
BsrI ACTGG 4 cut(s) 7, 59, 359, 579
BssECI CCNNGG 2 cut(s) 110, 137
BssMI GATC 3 cut(s) 97, 264, 627
Bst2UI CCWGG 2 cut(s) 138, 714
Bst4CI ACNGT 2 cut(s) 95, 191
BstAFI CTTAAG 1 cut(s) 533
BstAPI GCANNNNNTGC 1 cut(s) 322
BstDEI CTNAG 3 cut(s) 210, 413, 485
BstENI CCTNNNNNAGG 1 cut(s) 114
BstHHI GCGC 1 cut(s) 638
BstKTI GATC 3 cut(s) 100, 267, 630
BstMAI GTCTC 2 cut(s) 391, 656
BstMBI GATC 3 cut(s) 97, 264, 627
BstMWI GCNNNNNNNGC 2 cut(s) 322, 418
BstNI CCWGG 2 cut(s) 138, 714
BstSCI CCNGG 2 cut(s) 136, 712
BstSFI CTRYAG 1 cut(s) 603
BstV1I GCAGC 3 cut(s) 312, 400, 637
BstV2I GAAGAC 1 cut(s) 566
Bsu15I ATCGAT 1 cut(s) 440
BsuTUI ATCGAT 1 cut(s) 440
BtsI GCAGTG 2 cut(s) 645, 665
BtsIMutI CAGTG 3 cut(s) 100, 645, 665
CciI TCATGA 1 cut(s) 66
CfoI GCGC 1 cut(s) 638
Cfr13I GGNCC 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 440
Csp6I GTAC 1 cut(s) 62
CspCI CAANNNNNGTGG 2 cut(s) 364, 399
CviAII CATG 5 cut(s) 67, 151, 262, 427, 671
CviJI RGCY 8 cut(s) 127, 209, 303, 391, 412, 433, 494, 650
CviKI_1 RGCY 8 cut(s) 127, 209, 303, 391, 412, 433, 494, 650
CviQI GTAC 1 cut(s) 62
DdeI CTNAG 3 cut(s) 210, 413, 485
DpnI GATC 3 cut(s) 99, 266, 629
DpnII GATC 3 cut(s) 97, 264, 627
Eco47I GGWCC 1 cut(s) 4
EcoNI CCTNNNNNAGG 1 cut(s) 114
EcoRII CCWGG 2 cut(s) 136, 712
FaeI CATG 5 cut(s) 70, 154, 265, 430, 674
FaiI YATR 9 cut(s) 43, 48, 68, 152, 263, 428, 521, 594, 672
FatI CATG 5 cut(s) 66, 150, 261, 426, 670
FbaI TGATCA 2 cut(s) 97, 264
Fnu4HI GCNGC 3 cut(s) 326, 389, 651
Fsp4HI GCNGC 3 cut(s) 326, 389, 651
GlaI GCGC 1 cut(s) 637
GluI GCNGC 3 cut(s) 326, 389, 651
GsuI CTGGAG 4 cut(s) 42, 243, 413, 528
HhaI GCGC 1 cut(s) 638
Hin1II CATG 5 cut(s) 70, 154, 265, 430, 674
Hin6I GCGC 1 cut(s) 636
HinP1I GCGC 1 cut(s) 636
HinfI GANTC 5 cut(s) 52, 70, 437, 515, 620
HphI GGTGA 2 cut(s) 44, 475
Hpy188I TCNGA 1 cut(s) 632
Hpy188III TCNNGA 4 cut(s) 17, 67, 181, 507
HpyAV CCTTC 3 cut(s) 207, 223, 711
HpyCH4III ACNGT 2 cut(s) 95, 191
HpyCH4IV ACGT 2 cut(s) 103, 156
HpyCH4V TGCA 8 cut(s) 175, 316, 364, 450, 605, 653, 658, 670
HpyF10VI GCNNNNNNNGC 2 cut(s) 322, 418
HpyF3I CTNAG 3 cut(s) 210, 413, 485
HpySE526I ACGT 2 cut(s) 103, 156
Hsp92II CATG 5 cut(s) 70, 154, 265, 430, 674
HspAI GCGC 1 cut(s) 636
Ksp22I TGATCA 2 cut(s) 97, 264
Kzo9I GATC 3 cut(s) 97, 264, 627
LmnI GCTCC 4 cut(s) 112, 232, 430, 471
Lsp1109I GCAGC 3 cut(s) 312, 400, 637
LweI GCATC 1 cut(s) 208
MaeII ACGT 2 cut(s) 103, 156
MalI GATC 3 cut(s) 99, 266, 629
MboI GATC 3 cut(s) 97, 264, 627
MboII GAAGA 3 cut(s) 192, 571, 687
MfeI CAATTG 1 cut(s) 381
MhlI GDGCHC 2 cut(s) 109, 237
MluCI AATT 4 cut(s) 145, 381, 477, 615
MseI TTAA 1 cut(s) 534
MslI CAYNNNNRTG 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 391
MspCI CTTAAG 1 cut(s) 533
MspR9I CCNGG 2 cut(s) 138, 714
MunI CAATTG 1 cut(s) 381
Mva1269I GAATGC 1 cut(s) 316
MvaI CCWGG 2 cut(s) 138, 714
MwoI GCNNNNNNNGC 2 cut(s) 322, 418
NdeII GATC 3 cut(s) 97, 264, 627
NlaIII CATG 5 cut(s) 70, 154, 265, 430, 674
NlaIV GGNNCC 1 cut(s) 337
PagI TCATGA 1 cut(s) 66
PctI GAATGC 1 cut(s) 316
PfeI GAWTC 5 cut(s) 52, 70, 437, 515, 620
PflMI CCANNNNNTGG 1 cut(s) 460
PkrI GCNGC 3 cut(s) 327, 390, 652
Psp6I CCWGG 2 cut(s) 136, 712
PspGI CCWGG 2 cut(s) 136, 712
PspN4I GGNNCC 1 cut(s) 337
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 607
PvuII CAGCTG 1 cut(s) 391
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 3 cut(s) 326, 389, 651
Sau3AI GATC 3 cut(s) 97, 264, 627
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 63
ScrFI CCNGG 2 cut(s) 138, 714
SduI GDGCHC 2 cut(s) 109, 237
SetI ASST 9 cut(s) 106, 159, 393, 414, 435, 531, 652, 715, 722
SfaNI GCATC 1 cut(s) 208
SfcI CTRYAG 1 cut(s) 603
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 155
SmlI CTYRAG 2 cut(s) 181, 533
SmoI CTYRAG 2 cut(s) 181, 533
Sse9I AATT 4 cut(s) 145, 381, 477, 615
SspI AATATT 1 cut(s) 571
StyD4I CCNGG 2 cut(s) 136, 712
TaaI ACNGT 2 cut(s) 95, 191
TaiI ACGT 2 cut(s) 106, 159
TaqI TCGA 1 cut(s) 440
TaqII GACCGA 1 cut(s) 230
TasI AATT 4 cut(s) 145, 381, 477, 615
TatI WGTACW 1 cut(s) 61
TfiI GAWTC 5 cut(s) 52, 70, 437, 515, 620
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TscAI CASTG 3 cut(s) 100, 645, 672
TseI GCWGC 3 cut(s) 325, 388, 650
TspDTI ATGAA 4 cut(s) 83, 167, 687, 687
TspRI CASTG 3 cut(s) 100, 645, 672
Van91I CCANNNNNTGG 1 cut(s) 460
Vha464I CTTAAG 1 cut(s) 533
VpaK11BI GGWCC 1 cut(s) 4
XagI CCTNNNNNAGG 1 cut(s) 114
ZrmI AGTACT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.