Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0012075

Physical Location & Seq

Genomic Coordinates Forward (+)

18878715 .. 18880603

Gene Structure 1889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1206900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGACCGATATATCCTCAAAGCCTTGGAAGGTGAATTTTTATGGTATGATGAGAGTCCTCCAGTATTACTGAATCAAAGTGCTTTTGTGCCGTACACAAATAGACCCATTAGTAATCAGCTCCCTAATGGTGTGGCAAAATCCATGAACGTGAACAAGAGGATGCTGCAATTCTTGAGGAAAAGCTGGCAACCTGCAGCTGCAAGAAATGAAGCCGGAGAGGACGGCAGAGAACGGGGGTTACGCCATATGATCAACGAGCGCATGAGGAGGGAGAAGCAGAAGCAAAGCTACTTAGCCTTGCATTCTATGCTGTCCGCTGGAACCAGGAATGATAAGAACTTGATTGTGCAAATGACAGCAATGAATATTCAGCAGCTGAAGAGGTATGAGGAGGAGCTGAGAAAGAAGAACATGGAGCTTGAAACACTTCTGGTAGAAAATGAAAAGGAGAGAGTGAAATGGACAAAGATTAGATTAAAGGTGGCTAATCCTACATCAGGAATTGATTCTACGTTGGAGGTTCTTAAGTGCTTGCAACATTTGGGTTTGAAAGCCAGAAATATTCGCTCTAATTTCTCACTCGAGGAGTTTTCAGCAGAGCTGGAAATTGAGTCCAAGATTGGAGCCGCAGAGATAGAAGAGTCTGTGCAAGAAACACTCTATGAAGCCGAGAGGAAATTGCATTTTCCATTTCCAGCAGGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

237

Amino Acids

27.45

Weight (kDa)

9.21

Isoelectric Point (pI)

53.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43650 AT5G43650
fragaria_vesca	FvH4_4g02610 FvH4_4g02610
malus_domestica	MD13G1206900.v1.1 MD16G1208400.v1.1
prunus_persica	Prupe.1G030500_v2.0.a1
pyrus_communis	pycom13g17920 pycom16g17560
rosa_chinensis	RchiOBHm_Chr4g0390311
rosa_laevigata	RLG00000009925
rosa_multiflora	Rmu_sc0010889.1_g000004
rosa_roxburghii	Rroxscaffold_5G00336420
rosa_rugosa	Rorug03G0330100
rosa_samantha	Rh4AG031600 Rh4BG025600 Rh4CG034700 Rh4DG026700
rosa_wichuraiana	Rw4G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	202
AciI	CCGC	2 cut(s)	318, 630
AcsI	RAATTY	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	401
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	500
AflII	CTTAAG	1 cut(s)	527
AgsI	TTSAA	2 cut(s)	425, 553
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	8 cut(s)	121, 186, 200, 291, 379, 400, 421, 604
AluI	AGCT	8 cut(s)	121, 186, 200, 291, 379, 400, 421, 604
AlwNI	CAGNNNCTG	1 cut(s)	379
Ama87I	CYCGRG	1 cut(s)	584
ApeKI	GCWGC	4 cut(s)	166, 197, 200, 376
ApoI	RAATTY	1 cut(s)	35
Asp700I	GAANNNNTTC	2 cut(s)	429, 508
AspLEI	GCGC	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	44
AvaI	CYCGRG	1 cut(s)	584
AvaII	GGWCC	1 cut(s)	4
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BbvI	GCAGC	4 cut(s)	153, 187, 209, 388
BceAI	ACGGC	2 cut(s)	76, 241
BciT130I	CCWGG	1 cut(s)	328
BclI	TGATCA	1 cut(s)	252
BfmI	CTRYAG	1 cut(s)	195
BfrI	CTTAAG	1 cut(s)	527
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	5 cut(s)	167, 198, 201, 377, 630
BlsI	GCNGC	5 cut(s)	168, 199, 202, 378, 631
Bme1390I	CCNGG	1 cut(s)	328
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	325, 628
BmrFI	CCNGG	1 cut(s)	328
BmsI	GCATC	1 cut(s)	153
BpmI	CTGGAG	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse1I	ACTGG	1 cut(s)	62
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	4 cut(s)	283, 407, 410, 602
BseXI	GCAGC	4 cut(s)	153, 187, 209, 388
BsiHKCI	CYCGRG	1 cut(s)	584
BsiSI	CCGG	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmI	GAATGC	1 cut(s)	304
BsoBI	CYCGRG	1 cut(s)	584
Bsp143I	GATC	1 cut(s)	252
BspACI	CCGC	2 cut(s)	318, 630
BspCNI	CTCAG	1 cut(s)	393
BspLI	GGNNCC	2 cut(s)	325, 628
BspMAI	CTGCAG	1 cut(s)	199
BspMI	ACCTGC	1 cut(s)	202
BspTI	CTTAAG	1 cut(s)	527
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	328
Bst6I	CTCTTC	2 cut(s)	377, 636
BstAFI	CTTAAG	1 cut(s)	527
BstAPI	GCANNNNNTGC	1 cut(s)	310
BstC8I	GCNNGC	2 cut(s)	188, 536
BstDEI	CTNAG	2 cut(s)	295, 401
BstENI	CCTNNNNNAGG	1 cut(s)	498
BstF5I	GGATG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	1 cut(s)	255
BstMBI	GATC	1 cut(s)	252
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstNI	CCWGG	1 cut(s)	328
BstSCI	CCNGG	1 cut(s)	326
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	4 cut(s)	153, 187, 209, 388
BtsCI	GGATG	1 cut(s)	168
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	2 cut(s)	188, 536
CaiI	CAGNNNCTG	1 cut(s)	379
CfoI	GCGC	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	3 cut(s)	145, 265, 415
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	2 cut(s)	295, 401
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
Eam1104I	CTCTTC	2 cut(s)	377, 636
EarI	CTCTTC	2 cut(s)	377, 636
Eco130I	CCWWGG	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	401
Eco88I	CYCGRG	1 cut(s)	584
EcoNI	CCTNNNNNAGG	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	3 cut(s)	148, 268, 418
FatI	CATG	3 cut(s)	144, 264, 414
FauNDI	CATATG	1 cut(s)	249
FbaI	TGATCA	1 cut(s)	252
Fnu4HI	GCNGC	5 cut(s)	167, 198, 201, 377, 630
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	5 cut(s)	167, 198, 201, 377, 630
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	5 cut(s)	167, 198, 201, 377, 630
GsuI	CTGGAG	1 cut(s)	45
HapII	CCGG	1 cut(s)	216
HhaI	GCGC	1 cut(s)	264
Hin1II	CATG	3 cut(s)	148, 268, 418
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HinfI	GANTC	5 cut(s)	55, 73, 509, 614, 644
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	2 cut(s)	96, 154
Hpy188III	TCNNGA	2 cut(s)	175, 501
Hpy8I	GTNNAC	2 cut(s)	96, 154
HpyAV	CCTTC	2 cut(s)	23, 699
HpyCH4IV	ACGT	2 cut(s)	150, 515
HpyCH4V	TGCA	8 cut(s)	169, 197, 203, 304, 352, 538, 652, 685
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	2 cut(s)	295, 401
HpySE526I	ACGT	2 cut(s)	150, 515
Hsp92II	CATG	3 cut(s)	148, 268, 418
HspAI	GCGC	1 cut(s)	262
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	1 cut(s)	252
LmnI	GCTCC	4 cut(s)	126, 397, 418, 626
Lsp1109I	GCAGC	4 cut(s)	153, 187, 209, 388
LweI	GCATC	1 cut(s)	153
MaeII	ACGT	2 cut(s)	150, 515
MaeIII	GTNAC	1 cut(s)	240
MalI	GATC	1 cut(s)	254
MboI	GATC	1 cut(s)	252
MboII	GAAGA	3 cut(s)	394, 421, 653
MluCI	AATT	6 cut(s)	35, 170, 504, 574, 609, 680
MlyI	GAGTC	3 cut(s)	64, 623, 653
MmeI	TCCRAC	1 cut(s)	498
MroXI	GAANNNNTTC	2 cut(s)	429, 508
MseI	TTAA	2 cut(s)	479, 528
MslI	CAYNNNNRTG	1 cut(s)	149
MspA1I	CMGCKG	3 cut(s)	200, 320, 379
MspCI	CTTAAG	1 cut(s)	527
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	328
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	1 cut(s)	310
NdeI	CATATG	1 cut(s)	249
NdeII	GATC	1 cut(s)	252
NlaIII	CATG	3 cut(s)	148, 268, 418
NlaIV	GGNNCC	2 cut(s)	325, 628
NmeAIII	GCCGAG	1 cut(s)	697
PaeR7I	CTCGAG	1 cut(s)	584
PctI	GAATGC	1 cut(s)	304
PdmI	GAANNNNTTC	2 cut(s)	429, 508
PfeI	GAWTC	2 cut(s)	73, 509
PkrI	GCNGC	5 cut(s)	168, 199, 202, 378, 631
PleI	GAGTC	3 cut(s)	63, 622, 652
PpsI	GAGTC	3 cut(s)	63, 622, 652
Psp6I	CCWGG	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	2 cut(s)	325, 628
PspPI	GGNCC	1 cut(s)	4
PspXI	VCTCGAGB	1 cut(s)	584
PsrI	GAACNNNNNNTAC	2 cut(s)	225, 257
PstI	CTGCAG	1 cut(s)	199
PstNI	CAGNNNCTG	1 cut(s)	379
PvuII	CAGCTG	2 cut(s)	200, 379
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	479, 528
SatI	GCNGC	5 cut(s)	167, 198, 201, 377, 630
Sau3AI	GATC	1 cut(s)	252
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	3 cut(s)	64, 623, 653
ScrFI	CCNGG	1 cut(s)	328
SfaNI	GCATC	1 cut(s)	153
SfcI	CTRYAG	1 cut(s)	195
Sfr274I	CTCGAG	1 cut(s)	584
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	584
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	3 cut(s)	175, 527, 584
SmoI	CTYRAG	3 cut(s)	175, 527, 584
Sse9I	AATT	6 cut(s)	35, 170, 504, 574, 609, 680
SsiI	CCGC	2 cut(s)	318, 630
SspI	AATATT	2 cut(s)	370, 565
StyD4I	CCNGG	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	24
TaiI	ACGT	2 cut(s)	153, 518
TaqI	TCGA	1 cut(s)	585
TaqII	GACCGA	1 cut(s)	21
TasI	AATT	6 cut(s)	35, 170, 504, 574, 609, 680
TauI	GCSGC	1 cut(s)	632
TfiI	GAWTC	2 cut(s)	73, 509
Tru1I	TTAA	2 cut(s)	479, 528
Tru9I	TTAA	2 cut(s)	479, 528
TseI	GCWGC	4 cut(s)	166, 197, 200, 376
TspDTI	ATGAA	5 cut(s)	161, 225, 380, 459, 681
Vha464I	CTTAAG	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	498
XapI	RAATTY	1 cut(s)	35
XhoI	CTCGAG	1 cut(s)	584
XmnI	GAANNNNTTC	2 cut(s)	429, 508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.