Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012075

Physical Location & Seq

Genomic Coordinates Forward (+)

2170019 .. 2172394

Gene Structure 2376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G030500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAACATGGACCAATATATCCTTGAAGCACTGGAAGGTGAGTTTTTGTTGCATGAGAGTCTTCCAGTACTAAACCAAAGAGCTTTTGTGCCCTACACAAGCAGACCCATCACTGAAAAGGGGCTTGATAAGCCTCCTAACTCCATGAACATGAACAAGAGGATGGTACAGTTCCTGAGGAAAAGTTGGGCACCTGCAACTGCCCGAATCGTAACCGGAGACGACTGCAAAGAACGCGGTTTTCGGCACATGCTCAACGAGCGCATGAGGAGGGAGAAGCAGAAGCAGAGCTACATGGCCTTGCATTCCATGCTGCCAACTGGAGCTAAGAGTGATAAGAACTGGATTGTGCAAATGACAGCCATGAATATTCAGCAACTGCAGAGGTATAAGGAGGAGCTGAGAAAGAGGAACATGGAGGTTGAAGCCATTTTGGTGGCAAACGAAAAGGAGCGAGTGAATTGGAGCAAGATTAGATTAAGGGTGGCTAATCCAACATCAGGGGTTGATTCTATGCTGGAGGTTCTTAGGTGCTTGCAATATTTGGGGTTGAAAGCCAGAAATGTTCGATCTAATTTCTCTGCCCAGGAGTTTTCAGCAGAGCTGGAAATTGAAACCAAGATTGGGGCCGCGGAGATAGAAGAGGCCTTGCAAGAAACCCTCTACGAAGCTGAGAGGAAACTTCGGTTTTCATTTCCAGGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

236

Amino Acids

27.43

Weight (kDa)

9.41

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43650 AT5G43650
fragaria_vesca	FvH4_4g02610 FvH4_4g02610
malus_domestica	MD13G1206900.v1.1 MD16G1208400.v1.1
prunus_persica	Prupe.1G030500_v2.0.a1
pyrus_communis	pycom13g17920 pycom16g17560
rosa_chinensis	RchiOBHm_Chr4g0390311
rosa_laevigata	RLG00000009925
rosa_multiflora	Rmu_sc0010889.1_g000004
rosa_roxburghii	Rroxscaffold_5G00336420
rosa_rugosa	Rorug03G0330100
rosa_samantha	Rh4AG031600 Rh4BG025600 Rh4CG034700 Rh4DG026700
rosa_wichuraiana	Rw4G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	202, 693
Acc36I	ACCTGC	2 cut(s)	202, 693
AccB1I	GGYRCC	1 cut(s)	190
AccII	CGCG	2 cut(s)	237, 632
AciI	CCGC	3 cut(s)	237, 630, 632
AfaI	GTAC	2 cut(s)	69, 168
AfiI	CCNNNNNNNGG	2 cut(s)	500, 624
AgsI	TTSAA	4 cut(s)	26, 425, 553, 614
AjnI	CCWGG	2 cut(s)	585, 697
AjuI	GAANNNNNNNTTGG	2 cut(s)	606, 638
AluBI	AGCT	6 cut(s)	83, 291, 326, 400, 604, 671
AluI	AGCT	6 cut(s)	83, 291, 326, 400, 604, 671
Alw26I	GTCTC	1 cut(s)	213
AlwNI	CAGNNNCTG	2 cut(s)	175, 379
AoxI	GGCC	3 cut(s)	297, 627, 645
ApeKI	GCWGC	1 cut(s)	313
AspLEI	GCGC	1 cut(s)	264
AspS9I	GGNCC	2 cut(s)	10, 627
AsuHPI	GGTGA	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	10
AxyI	CCTNAGG	1 cut(s)	176
BaeGI	GKGCMC	2 cut(s)	93, 193
BanI	GGYRCC	1 cut(s)	190
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BbsI	GAAGAC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	300
BccI	CCATC	2 cut(s)	116, 157
BciT130I	CCWGG	2 cut(s)	587, 699
BcoDI	GTCTC	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	380
BfuAI	ACCTGC	2 cut(s)	202, 693
BisI	GCNGC	2 cut(s)	314, 630
BlsI	GCNGC	2 cut(s)	315, 631
BmcAI	AGTACT	1 cut(s)	69
Bme1390I	CCNGG	2 cut(s)	587, 699
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	2 cut(s)	10, 627
BmiI	GGNNCC	2 cut(s)	192, 628
BmrFI	CCNGG	2 cut(s)	587, 699
BpiI	GAAGAC	1 cut(s)	53
BpmI	CTGGAG	2 cut(s)	342, 539
BsaJI	CCNNGG	2 cut(s)	585, 630
BsaWI	WCCGGW	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	2 cut(s)	500, 624
Bse1I	ACTGG	4 cut(s)	36, 65, 325, 347
Bse21I	CCTNAGG	1 cut(s)	176
BseBI	CCWGG	2 cut(s)	587, 699
BseDI	CCNNGG	2 cut(s)	585, 630
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	2 cut(s)	500, 624
BseMII	CTCAG	3 cut(s)	167, 392, 663
BseNI	ACTGG	4 cut(s)	36, 65, 325, 347
BseRI	GAGGAG	2 cut(s)	283, 410
BseSI	GKGCMC	2 cut(s)	93, 193
BseXI	GCAGC	1 cut(s)	300
Bsh1236I	CGCG	2 cut(s)	237, 632
BshFI	GGCC	3 cut(s)	299, 629, 647
BshNI	GGYRCC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	216
BslI	CCNNNNNNNGG	2 cut(s)	500, 624
BsmAI	GTCTC	1 cut(s)	213
BsmBI	CGTCTC	1 cut(s)	213
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	3 cut(s)	299, 629, 647
Bsp1286I	GDGCHC	2 cut(s)	93, 193
Bsp143I	GATC	1 cut(s)	569
BspACI	CCGC	3 cut(s)	237, 630, 632
BspANI	GGCC	3 cut(s)	299, 629, 647
BspCNI	CTCAG	3 cut(s)	168, 393, 664
BspFNI	CGCG	2 cut(s)	237, 632
BspLI	GGNNCC	2 cut(s)	192, 628
BspMAI	CTGCAG	1 cut(s)	384
BspMI	ACCTGC	2 cut(s)	202, 693
BspT107I	GGYRCC	1 cut(s)	190
BsrI	ACTGG	4 cut(s)	36, 65, 325, 347
BssECI	CCNNGG	2 cut(s)	585, 630
BssMI	GATC	1 cut(s)	569
Bst2UI	CCWGG	2 cut(s)	587, 699
Bst4CI	ACNGT	1 cut(s)	171
Bst6I	CTCTTC	1 cut(s)	636
BstAPI	GCANNNNNTGC	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	536
BstDEI	CTNAG	5 cut(s)	176, 327, 401, 527, 672
BstDSI	CCRYGG	1 cut(s)	630
BstF5I	GGATG	1 cut(s)	168
BstFNI	CGCG	2 cut(s)	237, 632
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	1 cut(s)	572
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	569
BstMWI	GCNNNNNNNGC	4 cut(s)	130, 234, 259, 310
BstNI	CCWGG	2 cut(s)	587, 699
BstNSI	RCATGY	1 cut(s)	253
BstSCI	CCNGG	2 cut(s)	585, 697
BstSFI	CTRYAG	1 cut(s)	380
BstSLI	GKGCMC	2 cut(s)	93, 193
BstUI	CGCG	2 cut(s)	237, 632
BstV1I	GCAGC	1 cut(s)	300
BstV2I	GAAGAC	1 cut(s)	53
BstXI	CCANNNNNNTGG	1 cut(s)	436
Bsu36I	CCTNAGG	1 cut(s)	176
BsuRI	GGCC	3 cut(s)	299, 629, 647
BtgI	CCRYGG	1 cut(s)	630
BtsCI	GGATG	1 cut(s)	168
BtsIMutI	CAGTG	2 cut(s)	29, 111
BveI	ACCTGC	2 cut(s)	202, 693
Cac8I	GCNNGC	1 cut(s)	536
CaiI	CAGNNNCTG	2 cut(s)	175, 379
CfoI	GCGC	1 cut(s)	264
Cfr13I	GGNCC	2 cut(s)	10, 627
Cfr42I	CCGCGG	1 cut(s)	633
Csp6I	GTAC	2 cut(s)	68, 167
CviQI	GTAC	2 cut(s)	68, 167
DdeI	CTNAG	5 cut(s)	176, 327, 401, 527, 672
DpnI	GATC	1 cut(s)	571
DpnII	GATC	1 cut(s)	569
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
Eco147I	AGGCCT	1 cut(s)	647
Eco47I	GGWCC	1 cut(s)	10
Eco81I	CCTNAGG	1 cut(s)	176
EcoRII	CCWGG	2 cut(s)	585, 697
Esp3I	CGTCTC	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	314, 630
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	2 cut(s)	314, 630
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	2 cut(s)	314, 630
GsuI	CTGGAG	2 cut(s)	342, 539
HaeIII	GGCC	3 cut(s)	299, 629, 647
HapII	CCGG	1 cut(s)	216
HhaI	GCGC	1 cut(s)	264
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HinfI	GANTC	3 cut(s)	58, 207, 509
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	1 cut(s)	50
Hpy188III	TCNNGA	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	171
HpyCH4V	TGCA	8 cut(s)	52, 197, 228, 304, 352, 382, 538, 652
HpyF10VI	GCNNNNNNNGC	4 cut(s)	130, 234, 259, 310
HpyF3I	CTNAG	5 cut(s)	176, 327, 401, 527, 672
HspAI	GCGC	1 cut(s)	262
KspI	CCGCGG	1 cut(s)	633
Kzo9I	GATC	1 cut(s)	569
LmnI	GCTCC	4 cut(s)	323, 397, 451, 465
Lsp1109I	GCAGC	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	571
MboI	GATC	1 cut(s)	569
MboII	GAAGA	2 cut(s)	53, 653
MhlI	GDGCHC	2 cut(s)	93, 193
MluCI	AATT	3 cut(s)	460, 574, 609
MlyI	GAGTC	1 cut(s)	67
MmeI	TCCRAC	1 cut(s)	518
MseI	TTAA	1 cut(s)	479
MslI	CAYNNNNRTG	2 cut(s)	149, 434
MspA1I	CMGCKG	1 cut(s)	632
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	2 cut(s)	587, 699
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	2 cut(s)	587, 699
MvnI	CGCG	2 cut(s)	237, 632
MwoI	GCNNNNNNNGC	4 cut(s)	130, 234, 259, 310
NdeII	GATC	1 cut(s)	569
NlaIV	GGNNCC	2 cut(s)	192, 628
NspI	RCATGY	1 cut(s)	253
PaqCI	CACCTGC	2 cut(s)	202, 693
PceI	AGGCCT	1 cut(s)	647
PctI	GAATGC	1 cut(s)	304
PfeI	GAWTC	2 cut(s)	207, 509
PkrI	GCNGC	2 cut(s)	315, 631
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
Psp6I	CCWGG	2 cut(s)	585, 697
PspGI	CCWGG	2 cut(s)	585, 697
PspN4I	GGNNCC	2 cut(s)	192, 628
PspPI	GGNCC	2 cut(s)	10, 627
PstI	CTGCAG	1 cut(s)	384
PstNI	CAGNNNCTG	2 cut(s)	175, 379
RsaI	GTAC	2 cut(s)	69, 168
RsaNI	GTAC	2 cut(s)	68, 167
RseI	CAYNNNNRTG	2 cut(s)	149, 434
SacII	CCGCGG	1 cut(s)	633
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	2 cut(s)	314, 630
Sau3AI	GATC	1 cut(s)	569
Sau96I	GGNCC	2 cut(s)	10, 627
ScaI	AGTACT	1 cut(s)	69
SchI	GAGTC	1 cut(s)	67
ScrFI	CCNGG	2 cut(s)	587, 699
SduI	GDGCHC	2 cut(s)	93, 193
SfcI	CTRYAG	1 cut(s)	380
Sfr303I	CCGCGG	1 cut(s)	633
SgrBI	CCGCGG	1 cut(s)	633
SinI	GGWCC	1 cut(s)	10
SmiMI	CAYNNNNRTG	2 cut(s)	149, 434
Sse9I	AATT	3 cut(s)	460, 574, 609
SseBI	AGGCCT	1 cut(s)	647
SsiI	CCGC	3 cut(s)	237, 630, 632
SspI	AATATT	2 cut(s)	370, 542
StuI	AGGCCT	1 cut(s)	647
StyD4I	CCNGG	2 cut(s)	585, 697
TaaI	ACNGT	1 cut(s)	171
TaqI	TCGA	1 cut(s)	568
TasI	AATT	3 cut(s)	460, 574, 609
TatI	WGTACW	1 cut(s)	67
TauI	GCSGC	1 cut(s)	632
TfiI	GAWTC	2 cut(s)	207, 509
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TscAI	CASTG	2 cut(s)	36, 118
TseI	GCWGC	1 cut(s)	313
TspDTI	ATGAA	5 cut(s)	17, 161, 167, 380, 681
TspRI	CASTG	2 cut(s)	36, 118
VpaK11BI	GGWCC	1 cut(s)	10
XceI	RCATGY	1 cut(s)	253
ZrmI	AGTACT	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.