Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0012075

Physical Location & Seq

Genomic Coordinates Forward (+)

19565641 .. 19569185

Gene Structure 3545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1208400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGACCAATATATCCTCAAAGCATTGGAAGGTGAATTGTTATGGTATGACGAGAGGCCTCCAGTAGTACTGAATCAAAGCGCTTTTGTGCTGTACACAAATACACCCGTCATTGATAAGCTTCCCAGTGATGTCACAAAATCCATGAATACGAACAAGAGGATGCTGCAATTCTTGAGGAAAAGCTGGCAACCTGCAACGGCAAGAAATGAAGCCGAACCGGACGGCAAACACCGGGCTTTTCGCCACATGATCAACGAGCGCATGAGGAGGGAGAAGCAGAAGCAGAGCTACTTAGCCTTGCATTCTTTACTGCCCAATGGAACCAGGAGTGATAAGAATTGGATTGTGCAAATGACAGCTATGAACATTCAGCAGCTGAAGAGGTACAAGGAGGAATTGATCAAGAGGAACGTGGAGCTGGAAGCGCTTTTGGTAGAAAATGAAAAGGAAAGAGTGAAATGGAGCAAGATTAGATTAAAGGTGGCTAATCCTACATCAGGAATTGAATCTATGTTGGAGGTTCTTAAGTGCTTGCAATATTTGGGTTTGAAAGCCAGAAATGTTCACTCTAATTTCTCCCCTGAGGAGTTTTCAGCAGAACTGGAAATTGAAACCAAGATTGGAGCTGCAGAGATAGAAGAGGCTGTGCAAGAAACACTCAATAAAGCTGAGAGGAAACTGCGTTTTCCATTTCCAGGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

236

Amino Acids

27.48

Weight (kDa)

9.38

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43650 AT5G43650
fragaria_vesca	FvH4_4g02610 FvH4_4g02610
malus_domestica	MD13G1206900.v1.1 MD16G1208400.v1.1
prunus_persica	Prupe.1G030500_v2.0.a1
pyrus_communis	pycom13g17920 pycom16g17560
rosa_chinensis	RchiOBHm_Chr4g0390311
rosa_laevigata	RLG00000009925
rosa_multiflora	Rmu_sc0010889.1_g000004
rosa_roxburghii	Rroxscaffold_5G00336420
rosa_rugosa	Rorug03G0330100
rosa_samantha	Rh4AG031600 Rh4BG025600 Rh4CG034700 Rh4DG026700
rosa_wichuraiana	Rw4G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	202
AcuI	CTGAAG	1 cut(s)	401
AfaI	GTAC	3 cut(s)	69, 95, 389
AfeI	AGCGCT	2 cut(s)	82, 429
AfiI	CCNNNNNNNGG	2 cut(s)	500, 698
AflII	CTTAAG	1 cut(s)	527
AgsI	TTSAA	3 cut(s)	509, 553, 614
AjnI	CCWGG	2 cut(s)	326, 697
AjuI	GAANNNNNNNTTGG	2 cut(s)	606, 638
AluBI	AGCT	8 cut(s)	121, 186, 291, 362, 379, 421, 629, 671
AluI	AGCT	8 cut(s)	121, 186, 291, 362, 379, 421, 629, 671
AlwNI	CAGNNNCTG	1 cut(s)	379
Aor51HI	AGCGCT	2 cut(s)	82, 429
AoxI	GGCC	1 cut(s)	56
ApeKI	GCWGC	3 cut(s)	166, 376, 629
AspLEI	GCGC	3 cut(s)	83, 264, 430
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	585
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BbvI	GCAGC	3 cut(s)	153, 388, 616
BceAI	ACGGC	2 cut(s)	216, 241
BciT130I	CCWGG	2 cut(s)	328, 699
BclI	TGATCA	2 cut(s)	252, 402
BcnI	CCSGG	1 cut(s)	236
BfmI	CTRYAG	1 cut(s)	630
BfoI	RGCGCY	2 cut(s)	84, 431
BfrI	CTTAAG	1 cut(s)	527
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	3 cut(s)	167, 377, 630
BlsI	GCNGC	3 cut(s)	168, 378, 631
BmcAI	AGTACT	1 cut(s)	69
Bme1390I	CCNGG	3 cut(s)	236, 328, 699
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	3 cut(s)	236, 328, 699
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	1 cut(s)	153
BmuI	ACTGGG	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	196
BpuMI	CCSGG	1 cut(s)	236
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	2 cut(s)	500, 698
Bse1I	ACTGG	3 cut(s)	62, 126, 609
Bse21I	CCTNAGG	1 cut(s)	585
BseBI	CCWGG	2 cut(s)	328, 699
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	2 cut(s)	500, 698
BseMII	CTCAG	2 cut(s)	576, 663
BseNI	ACTGG	3 cut(s)	62, 126, 609
BseRI	GAGGAG	2 cut(s)	283, 602
BseXI	GCAGC	3 cut(s)	153, 388, 616
BshFI	GGCC	1 cut(s)	58
BsiSI	CCGG	2 cut(s)	221, 235
BslI	CCNNNNNNNGG	2 cut(s)	500, 698
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	58
Bsp1407I	TGTACA	1 cut(s)	93
Bsp143I	GATC	2 cut(s)	252, 402
BspANI	GGCC	1 cut(s)	58
BspCNI	CTCAG	2 cut(s)	577, 664
BspLI	GGNNCC	1 cut(s)	325
BspMAI	CTGCAG	1 cut(s)	634
BspMI	ACCTGC	1 cut(s)	202
BspTI	CTTAAG	1 cut(s)	527
BsrGI	TGTACA	1 cut(s)	93
BsrI	ACTGG	3 cut(s)	62, 126, 609
BssMI	GATC	2 cut(s)	252, 402
Bst2UI	CCWGG	2 cut(s)	328, 699
Bst6I	CTCTTC	2 cut(s)	377, 636
BstAFI	CTTAAG	1 cut(s)	527
BstAUI	TGTACA	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	188, 536
BstDEI	CTNAG	3 cut(s)	295, 585, 672
BstENI	CCTNNNNNAGG	1 cut(s)	498
BstF5I	GGATG	1 cut(s)	168
BstH2I	RGCGCY	2 cut(s)	84, 431
BstHHI	GCGC	3 cut(s)	83, 264, 430
BstKTI	GATC	2 cut(s)	255, 405
BstMBI	GATC	2 cut(s)	252, 402
BstMWI	GCNNNNNNNGC	1 cut(s)	427
BstNI	CCWGG	2 cut(s)	328, 699
BstSCI	CCNGG	3 cut(s)	234, 326, 697
BstSFI	CTRYAG	1 cut(s)	630
BstV1I	GCAGC	3 cut(s)	153, 388, 616
Bsu36I	CCTNAGG	1 cut(s)	585
BsuRI	GGCC	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	133
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	2 cut(s)	188, 536
CaiI	CAGNNNCTG	1 cut(s)	379
CfoI	GCGC	3 cut(s)	83, 264, 430
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	3 cut(s)	68, 94, 388
CviAII	CATG	3 cut(s)	145, 250, 265
CviQI	GTAC	3 cut(s)	68, 94, 388
DdeI	CTNAG	3 cut(s)	295, 585, 672
DpnI	GATC	2 cut(s)	254, 404
DpnII	GATC	2 cut(s)	252, 402
Eam1104I	CTCTTC	2 cut(s)	377, 636
EarI	CTCTTC	2 cut(s)	377, 636
Eco147I	AGGCCT	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	4
Eco47III	AGCGCT	2 cut(s)	82, 429
Eco57I	CTGAAG	1 cut(s)	401
Eco81I	CCTNAGG	1 cut(s)	585
EcoNI	CCTNNNNNAGG	1 cut(s)	498
EcoRII	CCWGG	2 cut(s)	326, 697
FaeI	CATG	3 cut(s)	148, 253, 268
FaiI	YATR	8 cut(s)	12, 43, 48, 146, 251, 266, 365, 515
FatI	CATG	3 cut(s)	144, 249, 264
FbaI	TGATCA	2 cut(s)	252, 402
Fnu4HI	GCNGC	3 cut(s)	167, 377, 630
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	3 cut(s)	167, 377, 630
GlaI	GCGC	3 cut(s)	82, 263, 429
GluI	GCNGC	3 cut(s)	167, 377, 630
GsuI	CTGGAG	1 cut(s)	45
HaeII	RGCGCY	2 cut(s)	84, 431
HaeIII	GGCC	1 cut(s)	58
HapII	CCGG	2 cut(s)	221, 235
HhaI	GCGC	3 cut(s)	83, 264, 430
Hin1II	CATG	3 cut(s)	148, 253, 268
Hin6I	GCGC	3 cut(s)	81, 262, 428
HinP1I	GCGC	3 cut(s)	81, 262, 428
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	2 cut(s)	73, 509
HpaII	CCGG	2 cut(s)	221, 235
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	2 cut(s)	96, 568
Hpy188III	TCNNGA	3 cut(s)	175, 406, 501
Hpy8I	GTNNAC	2 cut(s)	96, 568
HpyAV	CCTTC	2 cut(s)	23, 696
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	7 cut(s)	169, 197, 304, 352, 538, 632, 652
HpyF10VI	GCNNNNNNNGC	1 cut(s)	427
HpyF3I	CTNAG	3 cut(s)	295, 585, 672
HpySE526I	ACGT	1 cut(s)	414
Hsp92II	CATG	3 cut(s)	148, 253, 268
HspAI	GCGC	3 cut(s)	81, 262, 428
Ksp22I	TGATCA	2 cut(s)	252, 402
Kzo9I	GATC	2 cut(s)	252, 402
LmnI	GCTCC	3 cut(s)	418, 465, 626
Lsp1109I	GCAGC	3 cut(s)	153, 388, 616
LweI	GCATC	1 cut(s)	153
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	254, 404
MboI	GATC	2 cut(s)	252, 402
MboII	GAAGA	2 cut(s)	394, 653
MluCI	AATT	7 cut(s)	35, 170, 340, 398, 504, 574, 609
MmeI	TCCRAC	1 cut(s)	498
MseI	TTAA	2 cut(s)	479, 528
MspA1I	CMGCKG	1 cut(s)	379
MspCI	CTTAAG	1 cut(s)	527
MspI	CCGG	2 cut(s)	221, 235
MspR9I	CCNGG	3 cut(s)	236, 328, 699
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	2 cut(s)	328, 699
MwoI	GCNNNNNNNGC	1 cut(s)	427
NciI	CCSGG	1 cut(s)	236
NdeII	GATC	2 cut(s)	252, 402
NlaIII	CATG	3 cut(s)	148, 253, 268
NlaIV	GGNNCC	1 cut(s)	325
NmuCI	GTSAC	1 cut(s)	133
PceI	AGGCCT	1 cut(s)	58
PctI	GAATGC	1 cut(s)	304
PfeI	GAWTC	2 cut(s)	73, 509
PfoI	TCCNGGA	1 cut(s)	697
PkrI	GCNGC	3 cut(s)	168, 378, 631
Psp6I	CCWGG	2 cut(s)	326, 697
PspGI	CCWGG	2 cut(s)	326, 697
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	634
PstNI	CAGNNNCTG	1 cut(s)	379
PvuII	CAGCTG	1 cut(s)	379
RsaI	GTAC	3 cut(s)	69, 95, 389
RsaNI	GTAC	3 cut(s)	68, 94, 388
SaqAI	TTAA	2 cut(s)	479, 528
SatI	GCNGC	3 cut(s)	167, 377, 630
Sau3AI	GATC	2 cut(s)	252, 402
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	69
ScrFI	CCNGG	3 cut(s)	236, 328, 699
SfaNI	GCATC	1 cut(s)	153
SfcI	CTRYAG	1 cut(s)	630
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	2 cut(s)	175, 527
SmoI	CTYRAG	2 cut(s)	175, 527
Sse9I	AATT	7 cut(s)	35, 170, 340, 398, 504, 574, 609
SseBI	AGGCCT	1 cut(s)	58
SspI	AATATT	1 cut(s)	542
StuI	AGGCCT	1 cut(s)	58
StyD4I	CCNGG	3 cut(s)	234, 326, 697
TaiI	ACGT	1 cut(s)	417
TasI	AATT	7 cut(s)	35, 170, 340, 398, 504, 574, 609
TatI	WGTACW	2 cut(s)	67, 93
TfiI	GAWTC	2 cut(s)	73, 509
Tru1I	TTAA	2 cut(s)	479, 528
Tru9I	TTAA	2 cut(s)	479, 528
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	3 cut(s)	166, 376, 629
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	4 cut(s)	161, 225, 380, 459
TspRI	CASTG	1 cut(s)	133
Vha464I	CTTAAG	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	498
ZrmI	AGTACT	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.