Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0012075

Physical Location & Seq

Genomic Coordinates Forward (+)

38269439 .. 38270026

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0330100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTTGAATCTTGGTCTAAGCTCTTCTCGTAGTCCACAATTAAGGGAATTGTGGTCAGCATGCTTTGTTACTTCTCTATGGTTTATTTGGAGTTCAAGGAATAAGATTAAATATGATGGCTTTAGAGTGAATGTTGTTCATGCATGTTCTCTAATCTCTAGCCATATTATTTCATCAAGTAAGGTAGATACGGTCTGCATGTTTAATTCCTGTGAGGAGCTTGTGGTGTTGAAGAAATTTGGGGTGCAATGTAAACCCCGTCGTGCTCCACGAATAATTGAAGTTAATTGGCATCCTCCTCCTTATGGGTATATTAAGGTGAATACTGATGGGGCATGGAAAACTAGCTCGAATAAAGCTGGCTATGGCGGGGTGTTTCGGGATTATAGAGGCAAGATTCTAGGTGCCTTTTGTTCTAATTTGGACATTGCCAGTTCTGTTGCCGCTGAAGTTATGGCTGTTATCCAAGCTATTGAATTAGCTTGGATAAGGGAGTGGAAGCATATTTGGTTGGAAGTGGATTCAGAGTTAGTTCTTCACTTCCTTCGCTCTCCTACCTTAGTACCTTGGCAACTAAGAGTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

195

Amino Acids

22.2

Weight (kDa)

9.22

Isoelectric Point (pI)

56.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	108 - 184	1.9e-16	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43650 AT5G43650
fragaria_vesca	FvH4_4g02610 FvH4_4g02610
malus_domestica	MD13G1206900.v1.1 MD16G1208400.v1.1
prunus_persica	Prupe.1G030500_v2.0.a1
pyrus_communis	pycom13g17920 pycom16g17560
rosa_chinensis	RchiOBHm_Chr4g0390311
rosa_laevigata	RLG00000009925
rosa_multiflora	Rmu_sc0010889.1_g000004
rosa_roxburghii	Rroxscaffold_5G00336420
rosa_rugosa	Rorug03G0330100
rosa_samantha	Rh4AG031600 Rh4BG025600 Rh4CG034700 Rh4DG026700
rosa_wichuraiana	Rw4G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	404
AciI	CCGC	2 cut(s)	369, 444
AcsI	RAATTY	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	468
AfaI	GTAC	1 cut(s)	564
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	5 cut(s)	7, 96, 232, 281, 476
AluBI	AGCT	6 cut(s)	21, 220, 348, 359, 470, 482
AluI	AGCT	6 cut(s)	21, 220, 348, 359, 470, 482
Alw21I	GWGCWC	1 cut(s)	268
ApoI	RAATTY	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	331
BaeI	ACNNNNGTAYC	2 cut(s)	546, 579
BanI	GGYRCC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	268
BccI	CCATC	2 cut(s)	110, 323
BfaI	CTAG	3 cut(s)	159, 345, 401
BisI	GCNGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	445
BmiI	GGNNCC	1 cut(s)	406
BmsI	GCATC	1 cut(s)	301
BsaJI	CCNNGG	1 cut(s)	566
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	432
Bse3DI	GCAATG	2 cut(s)	254, 426
BseDI	CCNNGG	1 cut(s)	566
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMI	GCAATG	2 cut(s)	254, 426
BseNI	ACTGG	1 cut(s)	432
BseRI	GAGGAG	2 cut(s)	230, 288
BshNI	GGYRCC	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	268
BslI	CCNNNNNNNGG	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	268
BspACI	CCGC	2 cut(s)	369, 444
BspLI	GGNNCC	1 cut(s)	406
BspQI	GCTCTTC	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	404
BsrDI	GCAATG	2 cut(s)	254, 426
BsrI	ACTGG	1 cut(s)	432
BssECI	CCNNGG	1 cut(s)	566
BssT1I	CCWWGG	1 cut(s)	566
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	28
BstC8I	GCNNGC	2 cut(s)	61, 361
BstDEI	CTNAG	3 cut(s)	17, 559, 575
BstF5I	GGATG	1 cut(s)	292
BstNSI	RCATGY	3 cut(s)	63, 147, 202
BtsCI	GGATG	1 cut(s)	292
Cac8I	GCNNGC	2 cut(s)	61, 361
Csp6I	GTAC	1 cut(s)	563
CviAII	CATG	5 cut(s)	60, 140, 144, 199, 336
CviQI	GTAC	1 cut(s)	563
DdeI	CTNAG	3 cut(s)	17, 559, 575
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	566
Eco57I	CTGAAG	1 cut(s)	468
EcoT14I	CCWWGG	1 cut(s)	566
EcoT22I	ATGCAT	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	566
FaeI	CATG	5 cut(s)	63, 143, 147, 202, 339
FatI	CATG	5 cut(s)	59, 139, 143, 198, 335
FauI	CCCGC	1 cut(s)	362
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	444
FspBI	CTAG	3 cut(s)	159, 345, 401
GluI	GCNGC	1 cut(s)	444
Hin1II	CATG	5 cut(s)	63, 143, 147, 202, 339
HinfI	GANTC	3 cut(s)	7, 397, 521
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	2 cut(s)	35, 254
Hpy188I	TCNGA	1 cut(s)	526
Hpy188III	TCNNGA	1 cut(s)	380
Hpy8I	GTNNAC	2 cut(s)	35, 254
Hpy99I	CGWCG	1 cut(s)	264
HpyAV	CCTTC	1 cut(s)	554
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4V	TGCA	3 cut(s)	143, 198, 247
HpyF3I	CTNAG	3 cut(s)	17, 559, 575
Hsp92II	CATG	5 cut(s)	63, 143, 147, 202, 339
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	2 cut(s)	217, 271
LpnPI	CCDG	3 cut(s)	223, 345, 445
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	3 cut(s)	159, 345, 401
MaeIII	GTNAC	1 cut(s)	67
MboII	GAAGA	3 cut(s)	15, 244, 527
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	8 cut(s)	38, 47, 205, 236, 276, 286, 418, 476
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	4 cut(s)	208, 306, 309, 383
Mph1103I	ATGCAT	1 cut(s)	145
MseI	TTAA	5 cut(s)	41, 108, 204, 285, 315
MspA1I	CMGCKG	1 cut(s)	446
NlaIII	CATG	5 cut(s)	63, 143, 147, 202, 339
NlaIV	GGNNCC	1 cut(s)	406
NsiI	ATGCAT	1 cut(s)	145
NspI	RCATGY	3 cut(s)	63, 147, 202
PaeI	GCATGC	1 cut(s)	63
PciSI	GCTCTTC	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	268
PfeI	GAWTC	3 cut(s)	7, 397, 521
PkrI	GCNGC	1 cut(s)	445
PspN4I	GGNNCC	1 cut(s)	406
RsaI	GTAC	1 cut(s)	564
RsaNI	GTAC	1 cut(s)	563
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	5 cut(s)	41, 108, 204, 285, 315
SatI	GCNGC	1 cut(s)	444
SduI	GDGCHC	1 cut(s)	268
SfaNI	GCATC	1 cut(s)	301
SphI	GCATGC	1 cut(s)	63
Sse9I	AATT	8 cut(s)	38, 47, 205, 236, 276, 286, 418, 476
SsiI	CCGC	2 cut(s)	369, 444
SspMI	CTAG	3 cut(s)	159, 345, 401
StyI	CCWWGG	1 cut(s)	566
TaaI	ACNGT	1 cut(s)	193
TaqI	TCGA	1 cut(s)	350
TasI	AATT	8 cut(s)	38, 47, 205, 236, 276, 286, 418, 476
TauI	GCSGC	1 cut(s)	446
TfiI	GAWTC	3 cut(s)	7, 397, 521
Tru1I	TTAA	5 cut(s)	41, 108, 204, 285, 315
Tru9I	TTAA	5 cut(s)	41, 108, 204, 285, 315
TspDTI	ATGAA	2 cut(s)	128, 162
XapI	RAATTY	1 cut(s)	236
XceI	RCATGY	3 cut(s)	63, 147, 202
XspI	CTAG	3 cut(s)	159, 345, 401
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.