Rh4DG026700

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0012075
Physical Location & Seq
Forward (+)
4801192 .. 4803143
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG026700.1

Sequence Viewer

Length: 702 bp
ATGGACCGGTTTATTTTGGAGGCATTGGAGGGTGATTTCTTATGGTATGAAAATCCTCCAGTACTGAATCCAAGCGCCTTTGTGCCTTACACTGAAGCTCCTGAGTCAGGCAAGCCTACTAATTCTGGGTCTAATTCCATGAACATGAACAAGAGGATGGTGCGGTTCTTGAGGAAGAATTATCCACCTTCGACGGCTAGGATCGAAATAGGAGAGAAGGAGCACGGCAAGGAAAAGGGTTTTCGCCACATGATCAATGAGCGAATGAGGAGGGAGAAGCAGAAGCAGAGCTATTTTGCCTTGCATTCTTTGCTGCCTAATGGAACCAAGAGTGATAAGAATTGGATTGTGCAAATGGCGACCAGGAACATTCAGCAGCTGGAGAGGCAAAAGGAGGAGCTGAGAAAGCGGAACATGGAGCTCGAATCGATTTTGGGCAAGGAGAGATCAGTGAACTGGAGAAGGATTAGATTGAGGGTAGCCAATCCTACTTCAGGAGTTGATTCTATGCTGGAGGTTCTTAAGTGCTTGAAAAGTTTGGGATTAAAGACCAGAAATATTCAATCATTTTTCTCTCCGTATGAGTTTTCTGCAGAAGTGGAAATTGAATCTCAGATCGGAGCCACAGTGGTAGAAGCCGCGATGCAAGAAACACTATATGAAGTTGAGAGGAAACTTCTTTCTTCAGTTCCAGGAAGGTAA

Protein Analysis

233

Amino Acids

27.04

Weight (kDa)

9.56

Isoelectric Point (pI)

53.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 82 - 128 2.7e-07 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43650 AT5G43650
fragaria_vesca FvH4_4g02610 FvH4_4g02610
malus_domestica MD13G1206900.v1.1 MD16G1208400.v1.1
prunus_persica Prupe.1G030500_v2.0.a1
pyrus_communis pycom13g17920 pycom16g17560
rosa_chinensis RchiOBHm_Chr4g0390311
rosa_laevigata RLG00000009925
rosa_multiflora Rmu_sc0010889.1_g000004
rosa_roxburghii Rroxscaffold_5G00336420
rosa_rugosa Rorug03G0330100
rosa_samantha Rh4AG031600 Rh4BG025600 Rh4CG034700 Rh4DG026700
rosa_wichuraiana Rw4G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 641
AciI CCGC 3 cut(s) 163, 409, 639
AclWI GGATC 1 cut(s) 209
AcuI CTGAAG 3 cut(s) 114, 477, 669
AfaI GTAC 1 cut(s) 63
AfiI CCNNNNNNNGG 2 cut(s) 107, 494
AflII CTTAAG 1 cut(s) 521
AgeI ACCGGT 1 cut(s) 6
AgsI TTSAA 3 cut(s) 532, 563, 608
AjnI CCWGG 2 cut(s) 362, 691
AluBI AGCT 5 cut(s) 98, 291, 379, 400, 421
AluI AGCT 5 cut(s) 98, 291, 379, 400, 421
Alw21I GWGCWC 2 cut(s) 225, 423
AlwI GGATC 1 cut(s) 209
AlwNI CAGNNNCTG 1 cut(s) 379
ApeKI GCWGC 2 cut(s) 313, 376
AsiGI ACCGGT 1 cut(s) 6
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 44
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 423
Bbv12I GWGCWC 2 cut(s) 225, 423
BbvI GCAGC 2 cut(s) 300, 388
BccI CCATC 1 cut(s) 151
BceAI ACGGC 2 cut(s) 210, 241
BciT130I CCWGG 2 cut(s) 364, 693
BclI TGATCA 1 cut(s) 252
BfaI CTAG 1 cut(s) 198
BfmI CTRYAG 1 cut(s) 591
BfoI RGCGCY 1 cut(s) 78
BfrI CTTAAG 1 cut(s) 521
BisI GCNGC 3 cut(s) 314, 377, 639
BlsI GCNGC 3 cut(s) 315, 378, 640
BmcAI AGTACT 1 cut(s) 63
Bme1390I CCNGG 2 cut(s) 364, 693
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 325, 622
BmrFI CCNGG 2 cut(s) 364, 693
BmsI GCATC 1 cut(s) 633
BpmI CTGGAG 4 cut(s) 42, 401, 478, 533
BpuEI CTTGAG 1 cut(s) 190
Bsa29I ATCGAT 1 cut(s) 428
BsaWI WCCGGW 1 cut(s) 6
BsaXI ACNNNNNCTCC 4 cut(s) 82, 112, 612, 642
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 494
Bse118I RCCGGY 1 cut(s) 6
Bse1I ACTGG 2 cut(s) 59, 461
BseBI CCWGG 2 cut(s) 364, 693
BseCI ATCGAT 1 cut(s) 428
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 107, 494
BseMII CTCAG 3 cut(s) 93, 392, 626
BseNI ACTGG 2 cut(s) 59, 461
BseRI GAGGAG 2 cut(s) 283, 410
BseXI GCAGC 2 cut(s) 300, 388
Bsh1236I CGCG 1 cut(s) 641
BshTI ACCGGT 1 cut(s) 6
BshVI ATCGAT 1 cut(s) 428
BsiHKAI GWGCWC 2 cut(s) 225, 423
BsiSI CCGG 1 cut(s) 7
BslI CCNNNNNNNGG 2 cut(s) 107, 494
BsmI GAATGC 1 cut(s) 304
Bsp1286I GDGCHC 2 cut(s) 225, 423
Bsp143I GATC 4 cut(s) 201, 252, 446, 615
BspACI CCGC 3 cut(s) 163, 409, 639
BspCNI CTCAG 3 cut(s) 94, 393, 625
BspDI ATCGAT 1 cut(s) 428
BspFNI CGCG 1 cut(s) 641
BspLI GGNNCC 2 cut(s) 325, 622
BspMAI CTGCAG 1 cut(s) 595
BspPI GGATC 1 cut(s) 209
BspTI CTTAAG 1 cut(s) 521
BsrFI RCCGGY 1 cut(s) 6
BsrI ACTGG 2 cut(s) 59, 461
BssAI RCCGGY 1 cut(s) 6
BssMI GATC 4 cut(s) 201, 252, 446, 615
Bst2UI CCWGG 2 cut(s) 364, 693
Bst4CI ACNGT 1 cut(s) 628
BstAFI CTTAAG 1 cut(s) 521
BstAPI GCANNNNNTGC 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 3 cut(s) 102, 401, 612
BstENI CCTNNNNNAGG 2 cut(s) 105, 492
BstF5I GGATG 1 cut(s) 162
BstFNI CGCG 1 cut(s) 641
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 4 cut(s) 204, 255, 449, 618
BstMBI GATC 4 cut(s) 201, 252, 446, 615
BstMWI GCNNNNNNNGC 3 cut(s) 310, 385, 406
BstNI CCWGG 2 cut(s) 364, 693
BstSCI CCNGG 2 cut(s) 362, 691
BstSFI CTRYAG 1 cut(s) 591
BstUI CGCG 1 cut(s) 641
BstV1I GCAGC 2 cut(s) 300, 388
Bsu15I ATCGAT 1 cut(s) 428
BsuTUI ATCGAT 1 cut(s) 428
BtgZI GCGATG 1 cut(s) 656
BtsCI GGATG 1 cut(s) 162
BtsIMutI CAGTG 3 cut(s) 90, 456, 633
Cac8I GCNNGC 1 cut(s) 113
CaiI CAGNNNCTG 1 cut(s) 379
CfoI GCGC 1 cut(s) 77
Cfr10I RCCGGY 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 428
Csp6I GTAC 1 cut(s) 62
CspAI ACCGGT 1 cut(s) 6
CviAII CATG 4 cut(s) 139, 145, 250, 415
CviQI GTAC 1 cut(s) 62
DdeI CTNAG 3 cut(s) 102, 401, 612
DpnI GATC 4 cut(s) 203, 254, 448, 617
DpnII GATC 4 cut(s) 201, 252, 446, 615
Ecl136II GAGCTC 1 cut(s) 421
Eco24I GRGCYC 1 cut(s) 423
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 421
Eco57I CTGAAG 3 cut(s) 114, 477, 669
EcoICRI GAGCTC 1 cut(s) 421
EcoNI CCTNNNNNAGG 2 cut(s) 105, 492
EcoRII CCWGG 2 cut(s) 362, 691
EcoT38I GRGCYC 1 cut(s) 423
FaeI CATG 4 cut(s) 142, 148, 253, 418
FatI CATG 4 cut(s) 138, 144, 249, 414
FbaI TGATCA 1 cut(s) 252
Fnu4HI GCNGC 3 cut(s) 314, 377, 639
FokI GGATG 1 cut(s) 169
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 3 cut(s) 314, 377, 639
FspBI CTAG 1 cut(s) 198
GlaI GCGC 1 cut(s) 76
GluI GCNGC 3 cut(s) 314, 377, 639
GsuI CTGGAG 4 cut(s) 42, 401, 478, 533
HaeII RGCGCY 1 cut(s) 78
HapII CCGG 1 cut(s) 7
HhaI GCGC 1 cut(s) 77
Hin1II CATG 4 cut(s) 142, 148, 253, 418
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HinfI GANTC 5 cut(s) 67, 104, 425, 503, 608
HpaII CCGG 1 cut(s) 7
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 454
Hpy188I TCNGA 2 cut(s) 615, 620
Hpy188III TCNNGA 3 cut(s) 101, 169, 495
Hpy8I GTNNAC 1 cut(s) 454
Hpy99I CGWCG 1 cut(s) 196
HpyAV CCTTC 4 cut(s) 198, 211, 456, 690
HpyCH4III ACNGT 1 cut(s) 628
HpyCH4V TGCA 4 cut(s) 304, 352, 593, 646
HpyF10VI GCNNNNNNNGC 3 cut(s) 310, 385, 406
HpyF3I CTNAG 3 cut(s) 102, 401, 612
Hsp92II CATG 4 cut(s) 142, 148, 253, 418
HspAI GCGC 1 cut(s) 75
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 4 cut(s) 201, 252, 446, 615
LmnI GCTCC 5 cut(s) 103, 220, 397, 418, 620
Lsp1109I GCAGC 2 cut(s) 300, 388
LweI GCATC 1 cut(s) 633
MaeI CTAG 1 cut(s) 198
MalI GATC 4 cut(s) 203, 254, 448, 617
MboI GATC 4 cut(s) 201, 252, 446, 615
MboII GAAGA 2 cut(s) 187, 675
MhlI GDGCHC 2 cut(s) 225, 423
MluCI AATT 5 cut(s) 121, 133, 178, 340, 603
MlyI GAGTC 1 cut(s) 113
MseI TTAA 2 cut(s) 522, 545
MslI CAYNNNNRTG 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 379
MspCI CTTAAG 1 cut(s) 521
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 2 cut(s) 364, 693
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 2 cut(s) 364, 693
MvnI CGCG 1 cut(s) 641
MwoI GCNNNNNNNGC 3 cut(s) 310, 385, 406
NdeII GATC 4 cut(s) 201, 252, 446, 615
NlaIII CATG 4 cut(s) 142, 148, 253, 418
NlaIV GGNNCC 2 cut(s) 325, 622
PctI GAATGC 1 cut(s) 304
PfeI GAWTC 4 cut(s) 67, 425, 503, 608
PfoI TCCNGGA 1 cut(s) 691
PinAI ACCGGT 1 cut(s) 6
PkrI GCNGC 3 cut(s) 315, 378, 640
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
Psp124BI GAGCTC 1 cut(s) 423
Psp6I CCWGG 2 cut(s) 362, 691
PspGI CCWGG 2 cut(s) 362, 691
PspN4I GGNNCC 2 cut(s) 325, 622
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 595
PstNI CAGNNNCTG 1 cut(s) 379
PvuII CAGCTG 1 cut(s) 379
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
RseI CAYNNNNRTG 1 cut(s) 143
SacI GAGCTC 1 cut(s) 423
SaqAI TTAA 2 cut(s) 522, 545
SatI GCNGC 3 cut(s) 314, 377, 639
Sau3AI GATC 4 cut(s) 201, 252, 446, 615
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 63
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 2 cut(s) 364, 693
SduI GDGCHC 2 cut(s) 225, 423
SetI ASST 8 cut(s) 100, 190, 293, 381, 402, 423, 519, 701
SfaNI GCATC 1 cut(s) 633
SfcI CTRYAG 1 cut(s) 591
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 2 cut(s) 169, 521
SmoI CTYRAG 2 cut(s) 169, 521
Sse9I AATT 5 cut(s) 121, 133, 178, 340, 603
SsiI CCGC 3 cut(s) 163, 409, 639
SspI AATATT 1 cut(s) 559
SspMI CTAG 1 cut(s) 198
SstI GAGCTC 1 cut(s) 423
StyD4I CCNGG 2 cut(s) 362, 691
TaaI ACNGT 1 cut(s) 628
TaqI TCGA 4 cut(s) 191, 204, 423, 428
TasI AATT 5 cut(s) 121, 133, 178, 340, 603
TatI WGTACW 1 cut(s) 61
TauI GCSGC 1 cut(s) 641
TfiI GAWTC 4 cut(s) 67, 425, 503, 608
Tru1I TTAA 2 cut(s) 522, 545
Tru9I TTAA 2 cut(s) 522, 545
TscAI CASTG 3 cut(s) 97, 456, 633
TseI GCWGC 2 cut(s) 313, 376
TspDTI ATGAA 4 cut(s) 63, 155, 161, 675
TspGWI ACGGA 1 cut(s) 567
TspRI CASTG 3 cut(s) 97, 456, 633
Vha464I CTTAAG 1 cut(s) 521
VpaK11BI GGWCC 1 cut(s) 4
XagI CCTNNNNNAGG 2 cut(s) 105, 492
XspI CTAG 1 cut(s) 198
ZrmI AGTACT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.