Rmu_sc0010889.1_g000004

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010889.1
OG0012075
Physical Location & Seq
Forward (+)
13959 .. 17895
3937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010889.1_g000004.1.cds

Sequence Viewer

Length: 1020 bp
atggaccggtttattttggcggcattggagggtgattccttatggtatgaaaatcctccagtactgaatccaagcgcctttgtgccttacactgaagctcctgagtcaggcaagcctactaattctgggtctaattccatgaacatgaacaagaggatggtgcggttcttgaggaagagttatccaccttcgacggctaggatcgaattcggagagaaggagcacggcaaggacaagggttttcgccacatgatcaatgagcgaatgaggagggagaagcagaagcagagctattttgccttgcattctttgctgcctaatggaaccaagagtgataagaattggattgtgcaaatggcgaccaggaacattcagcagctggagaggcaaaaggaggagctgagaaagcggaacatggagctcgaatcgattttgggcaaggagagatcagtgaagtggagaacgactagattgagtgtagccaatcctacttcaggagttgattctatgctggaggttcttaagtgcttgaaaagtttgggattaaagaccagaaatattcaatcatttttctctccgtatgagttttctgcagaagtggaaattgaatctaagatcggagccacagcgctagaagccgcgatgcaagaaacactatatgaagttgagaggaaacttctttcttcagttccaggaagccttcaaatctcaggaaccactgccgcccaccttgaagttttcacctccaggagcccagaaccggccagaatcgacctaaccggccaccggaagagaccaaaccggcctcccaagaaggatccgagatctcttgcctggtttgccaccttccagtccaccttgcactgccatcttctgtcaatagctgaacctatccccagactccgggaaccggaaaaaccatcaccggaaccggcctggaaacagccgaaccgcccccctgaatctgccacacctttgaaccgccgtctgcctctccagcctctaccttcagccttgtaa

Protein Analysis

339

Amino Acids

38.64

Weight (kDa)

9.83

Isoelectric Point (pI)

61.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43650 AT5G43650
fragaria_vesca FvH4_4g02610 FvH4_4g02610
malus_domestica MD13G1206900.v1.1 MD16G1208400.v1.1
prunus_persica Prupe.1G030500_v2.0.a1
pyrus_communis pycom13g17920 pycom16g17560
rosa_chinensis RchiOBHm_Chr4g0390311
rosa_laevigata RLG00000009925
rosa_multiflora Rmu_sc0010889.1_g000004
rosa_roxburghii Rroxscaffold_5G00336420
rosa_rugosa Rorug03G0330100
rosa_samantha Rh4AG031600 Rh4BG025600 Rh4CG034700 Rh4DG026700
rosa_wichuraiana Rw4G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 641
AciI CCGC 7 cut(s) 20, 163, 409, 639, 723, 952, 982
AclWI GGATC 3 cut(s) 209, 812, 825
AcoI YGGCCR 2 cut(s) 762, 781
AcsI RAATTY 1 cut(s) 206
AcuI CTGAAG 4 cut(s) 114, 477, 669, 993
AfaI GTAC 1 cut(s) 63
AfeI AGCGCT 1 cut(s) 630
AfiI CCNNNNNNNGG 6 cut(s) 107, 494, 760, 786, 903, 910
AflII CTTAAG 1 cut(s) 521
AgeI ACCGGT 1 cut(s) 6
AgsI TTSAA 6 cut(s) 532, 563, 608, 704, 734, 979
AjnI CCWGG 5 cut(s) 362, 691, 746, 833, 935
AluBI AGCT 6 cut(s) 98, 291, 379, 400, 421, 884
AluI AGCT 6 cut(s) 98, 291, 379, 400, 421, 884
Alw21I GWGCWC 2 cut(s) 225, 423
Alw26I GTCTC 1 cut(s) 787
AlwI GGATC 3 cut(s) 209, 812, 825
AlwNI CAGNNNCTG 1 cut(s) 379
Aor51HI AGCGCT 1 cut(s) 630
AoxI GGCC 4 cut(s) 762, 781, 803, 933
ApeKI GCWGC 2 cut(s) 313, 376
ApoI RAATTY 1 cut(s) 206
AsiGI ACCGGT 1 cut(s) 6
AspLEI GCGC 2 cut(s) 77, 631
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 905
AsuHPI GGTGA 3 cut(s) 44, 733, 915
AvaII GGWCC 1 cut(s) 4
BamHI GGATCC 1 cut(s) 817
BanII GRGCYC 2 cut(s) 423, 755
Bbv12I GWGCWC 2 cut(s) 225, 423
BbvI GCAGC 2 cut(s) 300, 388
BccI CCATC 3 cut(s) 151, 876, 928
BceAI ACGGC 3 cut(s) 210, 241, 969
BciT130I CCWGG 5 cut(s) 364, 693, 748, 835, 937
BclI TGATCA 1 cut(s) 252
BcnI CCSGG 1 cut(s) 905
BcoDI GTCTC 1 cut(s) 787
BfaI CTAG 3 cut(s) 198, 468, 632
BfmI CTRYAG 1 cut(s) 591
BfoI RGCGCY 2 cut(s) 78, 632
BfrI CTTAAG 1 cut(s) 521
BglII AGATCT 1 cut(s) 824
BisI GCNGC 5 cut(s) 21, 314, 377, 639, 723
BlsI GCNGC 5 cut(s) 22, 315, 378, 640, 724
BmcAI AGTACT 1 cut(s) 63
Bme1390I CCNGG 6 cut(s) 364, 693, 748, 835, 905, 937
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 7 cut(s) 325, 622, 715, 752, 819, 909, 930
BmrFI CCNGG 6 cut(s) 364, 693, 748, 835, 905, 937
BmsI GCATC 1 cut(s) 633
BpmI CTGGAG 5 cut(s) 42, 401, 533, 730, 980
BpuEI CTTGAG 1 cut(s) 190
BpuMI CCSGG 1 cut(s) 905
Bsa29I ATCGAT 1 cut(s) 428
BsaI GGTCTC 1 cut(s) 787
BsaWI WCCGGW 4 cut(s) 6, 786, 910, 925
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 6 cut(s) 107, 494, 760, 786, 903, 910
Bse118I RCCGGY 5 cut(s) 6, 760, 779, 801, 931
Bse1I ACTGG 2 cut(s) 59, 850
BseBI CCWGG 5 cut(s) 364, 693, 748, 835, 937
BseCI ATCGAT 1 cut(s) 428
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 6 cut(s) 107, 494, 760, 786, 903, 910
BseMII CTCAG 3 cut(s) 93, 392, 723
BseNI ACTGG 2 cut(s) 59, 850
BseRI GAGGAG 2 cut(s) 283, 410
BseXI GCAGC 2 cut(s) 300, 388
Bsh1236I CGCG 1 cut(s) 641
BshFI GGCC 4 cut(s) 764, 783, 805, 935
BshTI ACCGGT 1 cut(s) 6
BshVI ATCGAT 1 cut(s) 428
BsiHKAI GWGCWC 2 cut(s) 225, 423
BsiSI CCGG 9 cut(s) 7, 761, 780, 787, 802, 904, 911, 926, 932
BslI CCNNNNNNNGG 6 cut(s) 107, 494, 760, 786, 903, 910
BsmAI GTCTC 1 cut(s) 787
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 4 cut(s) 764, 783, 805, 935
Bso31I GGTCTC 1 cut(s) 787
Bsp1286I GDGCHC 3 cut(s) 225, 423, 755
Bsp143I GATC 6 cut(s) 201, 252, 446, 615, 817, 824
BspACI CCGC 7 cut(s) 20, 163, 409, 639, 723, 952, 982
BspANI GGCC 4 cut(s) 764, 783, 805, 935
BspCNI CTCAG 3 cut(s) 94, 393, 722
BspDI ATCGAT 1 cut(s) 428
BspFNI CGCG 1 cut(s) 641
BspLI GGNNCC 7 cut(s) 325, 622, 715, 752, 819, 909, 930
BspMAI CTGCAG 1 cut(s) 595
BspPI GGATC 3 cut(s) 209, 812, 825
BspTI CTTAAG 1 cut(s) 521
BspTNI GGTCTC 1 cut(s) 787
BsrFI RCCGGY 5 cut(s) 6, 760, 779, 801, 931
BsrI ACTGG 2 cut(s) 59, 850
BssAI RCCGGY 5 cut(s) 6, 760, 779, 801, 931
BssMI GATC 6 cut(s) 201, 252, 446, 615, 817, 824
Bst2UI CCWGG 5 cut(s) 364, 693, 748, 835, 937
Bst6I CTCTTC 2 cut(s) 170, 785
BstAFI CTTAAG 1 cut(s) 521
BstAPI GCANNNNNTGC 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 4 cut(s) 102, 401, 612, 709
BstENI CCTNNNNNAGG 2 cut(s) 105, 492
BstF5I GGATG 1 cut(s) 162
BstFNI CGCG 1 cut(s) 641
BstH2I RGCGCY 2 cut(s) 78, 632
BstHHI GCGC 2 cut(s) 77, 631
BstKTI GATC 6 cut(s) 204, 255, 449, 618, 820, 827
BstMAI GTCTC 1 cut(s) 787
BstMBI GATC 6 cut(s) 201, 252, 446, 615, 817, 824
BstMWI GCNNNNNNNGC 6 cut(s) 310, 385, 406, 635, 839, 997
BstNI CCWGG 5 cut(s) 364, 693, 748, 835, 937
BstSCI CCNGG 6 cut(s) 362, 691, 746, 833, 903, 935
BstSFI CTRYAG 1 cut(s) 591
BstUI CGCG 1 cut(s) 641
BstV1I GCAGC 2 cut(s) 300, 388
BstX2I RGATCY 2 cut(s) 817, 824
BstYI RGATCY 2 cut(s) 817, 824
Bsu15I ATCGAT 1 cut(s) 428
BsuRI GGCC 4 cut(s) 764, 783, 805, 935
BsuTUI ATCGAT 1 cut(s) 428
BtgZI GCGATG 1 cut(s) 656
BtsCI GGATG 1 cut(s) 162
BtsI GCAGTG 2 cut(s) 717, 862
BtsIMutI CAGTG 4 cut(s) 90, 456, 717, 862
Cac8I GCNNGC 1 cut(s) 113
CaiI CAGNNNCTG 1 cut(s) 379
CfoI GCGC 2 cut(s) 77, 631
Cfr10I RCCGGY 5 cut(s) 6, 760, 779, 801, 931
Cfr13I GGNCC 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 428
Csp6I GTAC 1 cut(s) 62
CspAI ACCGGT 1 cut(s) 6
CviAII CATG 4 cut(s) 139, 145, 250, 415
CviQI GTAC 1 cut(s) 62
DdeI CTNAG 4 cut(s) 102, 401, 612, 709
DpnI GATC 6 cut(s) 203, 254, 448, 617, 819, 826
DpnII GATC 6 cut(s) 201, 252, 446, 615, 817, 824
EaeI YGGCCR 2 cut(s) 762, 781
Eam1104I CTCTTC 2 cut(s) 170, 785
EarI CTCTTC 2 cut(s) 170, 785
Ecl136II GAGCTC 1 cut(s) 421
Eco24I GRGCYC 2 cut(s) 423, 755
Eco31I GGTCTC 1 cut(s) 787
Eco47I GGWCC 1 cut(s) 4
Eco47III AGCGCT 1 cut(s) 630
Eco53kI GAGCTC 1 cut(s) 421
Eco57I CTGAAG 4 cut(s) 114, 477, 669, 993
EcoICRI GAGCTC 1 cut(s) 421
EcoNI CCTNNNNNAGG 2 cut(s) 105, 492
EcoRI GAATTC 1 cut(s) 206
EcoRII CCWGG 5 cut(s) 362, 691, 746, 833, 935
EcoT38I GRGCYC 2 cut(s) 423, 755
FaeI CATG 4 cut(s) 142, 148, 253, 418
FatI CATG 4 cut(s) 138, 144, 249, 414
FbaI TGATCA 1 cut(s) 252
Fnu4HI GCNGC 5 cut(s) 21, 314, 377, 639, 723
FokI GGATG 1 cut(s) 169
FriOI GRGCYC 2 cut(s) 423, 755
Fsp4HI GCNGC 5 cut(s) 21, 314, 377, 639, 723
FspBI CTAG 3 cut(s) 198, 468, 632
GlaI GCGC 2 cut(s) 76, 630
GluI GCNGC 5 cut(s) 21, 314, 377, 639, 723
GsuI CTGGAG 5 cut(s) 42, 401, 533, 730, 980
HaeII RGCGCY 2 cut(s) 78, 632
HaeIII GGCC 4 cut(s) 764, 783, 805, 935
HapII CCGG 9 cut(s) 7, 761, 780, 787, 802, 904, 911, 926, 932
HhaI GCGC 2 cut(s) 77, 631
Hin1II CATG 4 cut(s) 142, 148, 253, 418
Hin6I GCGC 2 cut(s) 75, 629
HinP1I GCGC 2 cut(s) 75, 629
HinfI GANTC 9 cut(s) 35, 67, 104, 425, 503, 608, 768, 900, 962
HpaII CCGG 9 cut(s) 7, 761, 780, 787, 802, 904, 911, 926, 932
HphI GGTGA 3 cut(s) 44, 733, 915
Hpy166II GTNNAC 1 cut(s) 855
Hpy188I TCNGA 3 cut(s) 212, 620, 822
Hpy188III TCNNGA 4 cut(s) 101, 169, 495, 711
Hpy8I GTNNAC 1 cut(s) 855
Hpy99I CGWCG 1 cut(s) 196
HpyAV CCTTC 6 cut(s) 198, 211, 710, 808, 856, 1017
HpyCH4V TGCA 5 cut(s) 304, 352, 593, 646, 862
HpyF10VI GCNNNNNNNGC 6 cut(s) 310, 385, 406, 635, 839, 997
HpyF3I CTNAG 4 cut(s) 102, 401, 612, 709
Hsp92II CATG 4 cut(s) 142, 148, 253, 418
HspAI GCGC 2 cut(s) 75, 629
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 6 cut(s) 201, 252, 446, 615, 817, 824
LmnI GCTCC 6 cut(s) 103, 220, 397, 418, 620, 750
Lsp1109I GCAGC 2 cut(s) 300, 388
LweI GCATC 1 cut(s) 633
MaeI CTAG 3 cut(s) 198, 468, 632
MalI GATC 6 cut(s) 203, 254, 448, 617, 819, 826
MboI GATC 6 cut(s) 201, 252, 446, 615, 817, 824
MboII GAAGA 4 cut(s) 187, 675, 802, 863
MflI RGATCY 2 cut(s) 817, 824
MhlI GDGCHC 3 cut(s) 225, 423, 755
MluCI AATT 5 cut(s) 121, 133, 206, 340, 603
MlyI GAGTC 2 cut(s) 113, 894
MseI TTAA 2 cut(s) 522, 545
MslI CAYNNNNRTG 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 379
MspCI CTTAAG 1 cut(s) 521
MspI CCGG 9 cut(s) 7, 761, 780, 787, 802, 904, 911, 926, 932
MspR9I CCNGG 6 cut(s) 364, 693, 748, 835, 905, 937
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 5 cut(s) 364, 693, 748, 835, 937
MvnI CGCG 1 cut(s) 641
MwoI GCNNNNNNNGC 6 cut(s) 310, 385, 406, 635, 839, 997
NciI CCSGG 1 cut(s) 905
NdeII GATC 6 cut(s) 201, 252, 446, 615, 817, 824
NlaIII CATG 4 cut(s) 142, 148, 253, 418
NlaIV GGNNCC 7 cut(s) 325, 622, 715, 752, 819, 909, 930
PctI GAATGC 1 cut(s) 304
PfeI GAWTC 7 cut(s) 35, 67, 425, 503, 608, 768, 962
PfoI TCCNGGA 3 cut(s) 691, 746, 903
PinAI ACCGGT 1 cut(s) 6
PkrI GCNGC 5 cut(s) 22, 315, 378, 640, 724
PleI GAGTC 2 cut(s) 112, 894
PpsI GAGTC 2 cut(s) 112, 894
Psp124BI GAGCTC 1 cut(s) 423
Psp6I CCWGG 5 cut(s) 362, 691, 746, 833, 935
PspGI CCWGG 5 cut(s) 362, 691, 746, 833, 935
PspN4I GGNNCC 7 cut(s) 325, 622, 715, 752, 819, 909, 930
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 595
PstNI CAGNNNCTG 1 cut(s) 379
PsuI RGATCY 2 cut(s) 817, 824
PvuII CAGCTG 1 cut(s) 379
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
RseI CAYNNNNRTG 1 cut(s) 143
SacI GAGCTC 1 cut(s) 423
SaqAI TTAA 2 cut(s) 522, 545
SatI GCNGC 5 cut(s) 21, 314, 377, 639, 723
Sau3AI GATC 6 cut(s) 201, 252, 446, 615, 817, 824
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 63
SchI GAGTC 2 cut(s) 113, 894
ScrFI CCNGG 6 cut(s) 364, 693, 748, 835, 905, 937
SduI GDGCHC 3 cut(s) 225, 423, 755
SfaNI GCATC 1 cut(s) 633
SfcI CTRYAG 1 cut(s) 591
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 2 cut(s) 169, 521
SmoI CTYRAG 2 cut(s) 169, 521
Sse9I AATT 5 cut(s) 121, 133, 206, 340, 603
SsiI CCGC 7 cut(s) 20, 163, 409, 639, 723, 952, 982
SspI AATATT 1 cut(s) 559
SspMI CTAG 3 cut(s) 198, 468, 632
SstI GAGCTC 1 cut(s) 423
StyD4I CCNGG 6 cut(s) 362, 691, 746, 833, 903, 935
TaqI TCGA 5 cut(s) 191, 204, 423, 428, 771
TasI AATT 5 cut(s) 121, 133, 206, 340, 603
TatI WGTACW 1 cut(s) 61
TauI GCSGC 3 cut(s) 23, 641, 725
TfiI GAWTC 7 cut(s) 35, 67, 425, 503, 608, 768, 962
Tru1I TTAA 2 cut(s) 522, 545
Tru9I TTAA 2 cut(s) 522, 545
TscAI CASTG 4 cut(s) 97, 456, 724, 869
TseI GCWGC 2 cut(s) 313, 376
TspDTI ATGAA 4 cut(s) 63, 155, 161, 675
TspGWI ACGGA 1 cut(s) 567
TspRI CASTG 4 cut(s) 97, 456, 724, 869
Vha464I CTTAAG 1 cut(s) 521
VpaK11BI GGWCC 1 cut(s) 4
XagI CCTNNNNNAGG 2 cut(s) 105, 492
XapI RAATTY 1 cut(s) 206
XspI CTAG 3 cut(s) 198, 468, 632
ZrmI AGTACT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.