Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003112

Physical Location & Seq

Genomic Coordinates Forward (+)

17920456 .. 17923802

Gene Structure 3347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G44480.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGCTAAATTCGTCTGGAGTAAGAACTCAACGAAGAAGCCCAAGACCTTTGTCTCTAGGAGGTAGAAAGATTATTACTCCAACAAAATTTGCTTATGATCATCATAATCCTGATAAAGTTTTGGATTTTGTAGAAATGGATTGCTTAGAACCCAAAACAAAGAACAATCTCACTGGAAAGCTTCTCTTAGTAGCTTCACTCTTAATTTTAGCCATTATTGTGATCAGTCAATCTTCAAGTTTCACATCTCCAAGCGCGTTTTCTCAAAGAGAGGAAGGAGTGACTCATGTGTTAGTCACTGGTGGTGCTGGTTATATCGGGTCACATGCGGCTTTAAGACTTCTTAGAGATTCATACCGCGTAACCATTGTGGACAATCTTTCGCGTGGAAATCTTGGTGCGGTTAAGACTTTACAGCAATTATTCCCGCAGACAGGAAGACTTCAGTTCATTTATGCTGACTTAGGAGATCCCTTAGCGGTCGAGAAAATCTTCTCGGAGAATGCTTTTGACGCTGTAATGCATTTTGCTGCGGTAGCTTATGTCGGAGAAAGCACTCTTTATCCTCTAAAATATTACCATAACATTACATCAAACACGTTAGGAGTTCTTGAAGCTATGGCTAGACATAAAGTAAAGAAACTGATATATTCTAGCACTTGTGCTACATATGGAGAGCCTGAAAAAATGCCGATTACTGAAGACACTCCACAGGTACCGATTAATCCATACGGAAAAGCTAAAAAGATGGCAGAGGATATGATCTTGGATTTCTCAAAGAACTCTGACATGGCGGTTATGATCTTAAGATACTTCAATGTGATTGGTTCAGATCCAGGAGGTAGATTAGGAGAAGCGCCAAGACCCGAACTTCGTGAGCAAGGAAGGATTTCTGGTGCTTGTTTCGATGCAGCTCGTGGTTTCATTCCCGGACTACAAGTGAAAGGAACGGATTACAAAACATCGGACGGTACTTGCATTAGAGACTATATAGATGTTACTGACCTCGTGGATGCTCACGTGAAGGCTCTCGAGAAAGCTCAGCCTCGAAAAGTCGGTATCTACAATGTTGGAACCGGAAAAGGGAGATCGGTTAAAGAATTCGTTGAGGCATGTAAGAAGGCGACAGGAGTTGAGATCAAAGTAGATTTCTTGCCTCGACGACCGGGAGATTACGCAGAGGTTTACAGTGATCCAACAAAGATTTTGAAAGATTTGAATTGGACTGCTCGATTCACTAATCTTCAAGATAGTCTTCAAGTTGCTTGGAGATGGCAAAAAATTCATCCTCATGGATATAATTCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009856 GO:0009987 GO:0010154 GO:0012505 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019322 GO:0019566 GO:0019567 GO:0022414 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044238 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046364 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050373 GO:0051704 GO:0061458 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

436

Amino Acids

48.34

Weight (kDa)

9.08

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	72 - 250	7.6e-11	RmlD substrate binding domain
Epimerase	PF01370	73 - 334	1.2e-51	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	73 - 253	1.9e-13	Polysaccharide biosynthesis protein
GDP_Man_Dehyd	PF16363	74 - 389	3.8e-52	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	74 - 235	1.9e-13	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4	PF07993	75 - 254	4.5e-06	Male sterility protein
NAD_binding_10	PF13460	77 - 250	3.1e-07	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20460 AT5G44480 AT5G44480 AT5G44480 AT5G44480
fragaria_vesca	FvH4_3g11380 FvH4_3g11380 FvH4_3g11380 FvH4_3g11380 FvH4_3g11380 FvH4_3g11380
malus_domestica	MD05G1263800.v1.1 MD10G1241500.v1.1
prunus_persica	Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1
pyrus_communis	pycom05g24780 pycom10g20250
rosa_chinensis	RchiOBHm_Chr5g0018331
rosa_laevigata	RLG00000032352
rosa_multiflora	Rmu_sc0011919.1_g000008
rosa_roxburghii	Rroxscaffold_1G00059410
rosa_rugosa	Rorug05G0041300 Rorug05G0041300 Rorug05G0041400 Rorug05G0041500
rosa_samantha	Rh5AG134800 Rh5BG133400 Rh5CG145200 Rh5DG134800
rosa_wichuraiana	Rw5G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	715
AccB1I	GGYRCC	1 cut(s)	715
AccII	CGCG	3 cut(s)	257, 360, 385
AciI	CCGC	7 cut(s)	329, 358, 401, 428, 479, 533, 794
AclWI	GGATC	3 cut(s)	464, 827, 1187
AcsI	RAATTY	4 cut(s)	7, 86, 1100, 1281
AcuI	CTGAAG	2 cut(s)	428, 720
AcvI	CACGTG	1 cut(s)	1021
AfaI	GTAC	2 cut(s)	717, 973
AfiI	CCNNNNNNNGG	2 cut(s)	434, 1083
AflII	CTTAAG	1 cut(s)	805
AflIII	ACRYGT	1 cut(s)	597
AgsI	TTSAA	7 cut(s)	237, 614, 817, 1210, 1219, 1247, 1259
AjnI	CCWGG	1 cut(s)	835
AjuI	GAANNNNNNNTTGG	2 cut(s)	244, 276
AluBI	AGCT	7 cut(s)	181, 194, 539, 617, 740, 914, 1040
AluI	AGCT	7 cut(s)	181, 194, 539, 617, 740, 914, 1040
Alw26I	GTCTC	2 cut(s)	57, 978
AlwI	GGATC	3 cut(s)	464, 827, 1187
Ama87I	CYCGRG	1 cut(s)	1031
ApeKI	GCWGC	2 cut(s)	530, 911
ApoI	RAATTY	4 cut(s)	7, 86, 1100, 1281
ArsI	GACNNNNNNTTYG	2 cut(s)	855, 887
AseI	ATTAAT	1 cut(s)	723
Asp700I	GAANNNNTTC	2 cut(s)	491, 889
Asp718I	GGTACC	1 cut(s)	715
AspLEI	GCGC	2 cut(s)	257, 859
AsuC2I	CCSGG	2 cut(s)	930, 1167
AvaI	CYCGRG	1 cut(s)	1031
BanI	GGYRCC	1 cut(s)	715
BauI	CACGAG	2 cut(s)	915, 1007
BbrPI	CACGTG	1 cut(s)	1021
BbsI	GAAGAC	3 cut(s)	445, 708, 1247
BbvI	GCAGC	2 cut(s)	517, 923
BccI	CCATC	2 cut(s)	742, 1266
BciT130I	CCWGG	1 cut(s)	837
BclI	TGATCA	2 cut(s)	97, 222
BcnI	CCSGG	2 cut(s)	930, 1167
BcoDI	GTCTC	2 cut(s)	57, 978
BfaI	CTAG	3 cut(s)	56, 624, 654
BfoI	RGCGCY	1 cut(s)	860
BfrI	CTTAAG	1 cut(s)	805
BisI	GCNGC	3 cut(s)	330, 531, 912
BlpI	GCTNAGC	1 cut(s)	1041
BlsI	GCNGC	3 cut(s)	331, 532, 913
Bme1390I	CCNGG	3 cut(s)	837, 930, 1167
BmeT110I	CYCGRG	1 cut(s)	1031
BmiI	GGNNCC	2 cut(s)	717, 1075
BmrFI	CCNGG	3 cut(s)	837, 930, 1167
BmsI	GCATC	2 cut(s)	898, 1003
BoxI	GACNNNNGTC	1 cut(s)	49
BpiI	GAAGAC	3 cut(s)	445, 708, 1247
BpmI	CTGGAG	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	475
Bpu1102I	GCTNAGC	1 cut(s)	1041
BpuMI	CCSGG	2 cut(s)	930, 1167
BsaAI	YACGTR	1 cut(s)	1021
BsaWI	WCCGGW	1 cut(s)	1076
Bsc4I	CCNNNNNNNGG	2 cut(s)	434, 1083
Bse1I	ACTGG	2 cut(s)	178, 304
BseBI	CCWGG	1 cut(s)	837
BseGI	GGATG	2 cut(s)	1018, 1285
BseLI	CCNNNNNNNGG	2 cut(s)	434, 1083
BseMII	CTCAG	1 cut(s)	1055
BseNI	ACTGG	2 cut(s)	178, 304
BseXI	GCAGC	2 cut(s)	517, 923
Bsh1236I	CGCG	3 cut(s)	257, 360, 385
Bsh1285I	CGRYCG	2 cut(s)	483, 1166
BshNI	GGYRCC	1 cut(s)	715
BsiEI	CGRYCG	2 cut(s)	483, 1166
BsiHKCI	CYCGRG	1 cut(s)	1031
BsiSI	CCGG	3 cut(s)	930, 1077, 1166
BslI	CCNNNNNNNGG	2 cut(s)	434, 1083
BsmAI	GTCTC	2 cut(s)	57, 978
BsmI	GAATGC	1 cut(s)	508
BsoBI	CYCGRG	1 cut(s)	1031
Bsp143I	GATC	9 cut(s)	97, 222, 469, 762, 801, 832, 1088, 1137, 1192
Bsp1720I	GCTNAGC	1 cut(s)	1041
BspACI	CCGC	7 cut(s)	329, 358, 401, 428, 479, 533, 794
BspCNI	CTCAG	1 cut(s)	1054
BspFNI	CGCG	3 cut(s)	257, 360, 385
BspLI	GGNNCC	2 cut(s)	717, 1075
BspPI	GGATC	3 cut(s)	464, 827, 1187
BspT107I	GGYRCC	1 cut(s)	715
BspTI	CTTAAG	1 cut(s)	805
BsrI	ACTGG	2 cut(s)	178, 304
BssMI	GATC	9 cut(s)	97, 222, 469, 762, 801, 832, 1088, 1137, 1192
BssSI	CACGAG	2 cut(s)	915, 1007
Bst2BI	CACGAG	2 cut(s)	915, 1007
Bst2UI	CCWGG	1 cut(s)	837
Bst4CI	ACNGT	2 cut(s)	971, 1190
BstAFI	CTTAAG	1 cut(s)	805
BstBAI	YACGTR	1 cut(s)	1021
BstDEI	CTNAG	6 cut(s)	145, 187, 344, 463, 475, 1041
BstF5I	GGATG	2 cut(s)	1018, 1285
BstFNI	CGCG	3 cut(s)	257, 360, 385
BstH2I	RGCGCY	1 cut(s)	860
BstHHI	GCGC	2 cut(s)	257, 859
BstKTI	GATC	9 cut(s)	100, 225, 472, 765, 804, 835, 1091, 1140, 1195
BstMAI	GTCTC	2 cut(s)	57, 978
BstMBI	GATC	9 cut(s)	97, 222, 469, 762, 801, 832, 1088, 1137, 1192
BstMCI	CGRYCG	2 cut(s)	483, 1166
BstMWI	GCNNNNNNNGC	2 cut(s)	512, 536
BstNI	CCWGG	1 cut(s)	837
BstNSI	RCATGY	2 cut(s)	329, 1116
BstPAI	GACNNNNGTC	1 cut(s)	49
BstSCI	CCNGG	3 cut(s)	835, 928, 1165
BstUI	CGCG	3 cut(s)	257, 360, 385
BstV1I	GCAGC	2 cut(s)	517, 923
BstV2I	GAAGAC	3 cut(s)	445, 708, 1247
BstX2I	RGATCY	2 cut(s)	469, 832
BstYI	RGATCY	2 cut(s)	469, 832
BtsCI	GGATG	2 cut(s)	1018, 1285
BtsIMutI	CAGTG	3 cut(s)	171, 297, 1195
CfoI	GCGC	2 cut(s)	257, 859
CseI	GACGC	1 cut(s)	521
Csp6I	GTAC	2 cut(s)	716, 972
CviAII	CATG	5 cut(s)	287, 326, 790, 1113, 1292
CviQI	GTAC	2 cut(s)	716, 972
DdeI	CTNAG	6 cut(s)	145, 187, 344, 463, 475, 1041
DpnI	GATC	9 cut(s)	99, 224, 471, 764, 803, 834, 1090, 1139, 1194
DpnII	GATC	9 cut(s)	97, 222, 469, 762, 801, 832, 1088, 1137, 1192
Eco57I	CTGAAG	2 cut(s)	428, 720
Eco72I	CACGTG	1 cut(s)	1021
Eco88I	CYCGRG	1 cut(s)	1031
EcoRI	GAATTC	1 cut(s)	1100
EcoRII	CCWGG	1 cut(s)	835
EcoT22I	ATGCAT	1 cut(s)	525
FaeI	CATG	5 cut(s)	290, 329, 793, 1116, 1295
FalI	AAGNNNNNCTT	4 cut(s)	170, 202, 1239, 1271
FatI	CATG	5 cut(s)	286, 325, 789, 1112, 1291
FauI	CCCGC	1 cut(s)	435
FauNDI	CATATG	1 cut(s)	670
FbaI	TGATCA	2 cut(s)	97, 222
Fnu4HI	GCNGC	3 cut(s)	330, 531, 912
FokI	GGATG	2 cut(s)	1025, 1272
Fsp4HI	GCNGC	3 cut(s)	330, 531, 912
FspBI	CTAG	3 cut(s)	56, 624, 654
GlaI	GCGC	2 cut(s)	256, 858
GluI	GCNGC	3 cut(s)	330, 531, 912
GsuI	CTGGAG	1 cut(s)	36
HaeII	RGCGCY	1 cut(s)	860
HapII	CCGG	3 cut(s)	930, 1077, 1166
HgaI	GACGC	1 cut(s)	521
HhaI	GCGC	2 cut(s)	257, 859
Hin1II	CATG	5 cut(s)	290, 329, 793, 1116, 1295
Hin6I	GCGC	2 cut(s)	255, 857
HinP1I	GCGC	2 cut(s)	255, 857
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	3 cut(s)	283, 350, 1233
HpaII	CCGG	3 cut(s)	930, 1077, 1166
Hpy166II	GTNNAC	2 cut(s)	373, 1186
Hpy188I	TCNGA	5 cut(s)	499, 548, 787, 832, 967
Hpy188III	TCNNGA	8 cut(s)	15, 110, 484, 611, 875, 1031, 1033, 1247
Hpy8I	GTNNAC	2 cut(s)	373, 1186
Hpy99I	CGWCG	1 cut(s)	1164
HpyAV	CCTTC	4 cut(s)	269, 879, 1018, 1114
HpyCH4III	ACNGT	2 cut(s)	971, 1190
HpyCH4IV	ACGT	2 cut(s)	599, 1020
HpyCH4V	TGCA	3 cut(s)	523, 911, 978
HpyF10VI	GCNNNNNNNGC	2 cut(s)	512, 536
HpyF3I	CTNAG	6 cut(s)	145, 187, 344, 463, 475, 1041
HpySE526I	ACGT	2 cut(s)	599, 1020
Hsp92II	CATG	5 cut(s)	290, 329, 793, 1116, 1295
HspAI	GCGC	2 cut(s)	255, 857
KpnI	GGTACC	1 cut(s)	719
Ksp22I	TGATCA	2 cut(s)	97, 222
Kzo9I	GATC	9 cut(s)	97, 222, 469, 762, 801, 832, 1088, 1137, 1192
Lsp1109I	GCAGC	2 cut(s)	517, 923
LweI	GCATC	2 cut(s)	898, 1003
MaeI	CTAG	3 cut(s)	56, 624, 654
MaeII	ACGT	2 cut(s)	599, 1020
MaeIII	GTNAC	5 cut(s)	280, 295, 321, 361, 997
MalI	GATC	9 cut(s)	99, 224, 471, 764, 803, 834, 1090, 1139, 1194
MboI	GATC	9 cut(s)	97, 222, 469, 762, 801, 832, 1088, 1137, 1192
MboII	GAAGA	7 cut(s)	45, 225, 450, 484, 713, 1235, 1247
MflI	RGATCY	2 cut(s)	469, 832
MluCI	AATT	8 cut(s)	7, 86, 204, 419, 1100, 1219, 1281, 1300
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	4 cut(s)	104, 526, 1051, 1220
Mph1103I	ATGCAT	1 cut(s)	525
MroXI	GAANNNNTTC	2 cut(s)	491, 889
MseI	TTAA	7 cut(s)	203, 335, 405, 723, 806, 1095, 1309
MslI	CAYNNNNRTG	2 cut(s)	218, 1290
MspCI	CTTAAG	1 cut(s)	805
MspI	CCGG	3 cut(s)	930, 1077, 1166
MspR9I	CCNGG	3 cut(s)	837, 930, 1167
Mva1269I	GAATGC	1 cut(s)	508
MvaI	CCWGG	1 cut(s)	837
MvnI	CGCG	3 cut(s)	257, 360, 385
MwoI	GCNNNNNNNGC	2 cut(s)	512, 536
NciI	CCSGG	2 cut(s)	930, 1167
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	9 cut(s)	97, 222, 469, 762, 801, 832, 1088, 1137, 1192
NlaIII	CATG	5 cut(s)	290, 329, 793, 1116, 1295
NlaIV	GGNNCC	2 cut(s)	717, 1075
NmuCI	GTSAC	3 cut(s)	280, 295, 321
NsiI	ATGCAT	1 cut(s)	525
NspI	RCATGY	2 cut(s)	329, 1116
PaeR7I	CTCGAG	1 cut(s)	1031
PctI	GAATGC	1 cut(s)	508
PdmI	GAANNNNTTC	2 cut(s)	491, 889
PfeI	GAWTC	2 cut(s)	350, 1233
PfoI	TCCNGGA	2 cut(s)	835, 928
PkrI	GCNGC	3 cut(s)	331, 532, 913
PleI	GAGTC	1 cut(s)	277
PmaCI	CACGTG	1 cut(s)	1021
PmlI	CACGTG	1 cut(s)	1021
PpsI	GAGTC	1 cut(s)	277
Ppu21I	YACGTR	1 cut(s)	1021
PshAI	GACNNNNGTC	1 cut(s)	49
PshBI	ATTAAT	1 cut(s)	723
Psp6I	CCWGG	1 cut(s)	835
PspCI	CACGTG	1 cut(s)	1021
PspGI	CCWGG	1 cut(s)	835
PspN4I	GGNNCC	2 cut(s)	717, 1075
PsuI	RGATCY	2 cut(s)	469, 832
RsaI	GTAC	2 cut(s)	717, 973
RsaNI	GTAC	2 cut(s)	716, 972
RseI	CAYNNNNRTG	2 cut(s)	218, 1290
SaqAI	TTAA	7 cut(s)	203, 335, 405, 723, 806, 1095, 1309
SatI	GCNGC	3 cut(s)	330, 531, 912
Sau3AI	GATC	9 cut(s)	97, 222, 469, 762, 801, 832, 1088, 1137, 1192
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	3 cut(s)	837, 930, 1167
SfaNI	GCATC	2 cut(s)	898, 1003
Sfr274I	CTCGAG	1 cut(s)	1031
SlaI	CTCGAG	1 cut(s)	1031
SmiMI	CAYNNNNRTG	2 cut(s)	218, 1290
SmlI	CTYRAG	2 cut(s)	805, 1031
SmoI	CTYRAG	2 cut(s)	805, 1031
Sse9I	AATT	8 cut(s)	7, 86, 204, 419, 1100, 1219, 1281, 1300
SsiI	CCGC	7 cut(s)	329, 358, 401, 428, 479, 533, 794
SspI	AATATT	1 cut(s)	575
SspMI	CTAG	3 cut(s)	56, 624, 654
StyD4I	CCNGG	3 cut(s)	835, 928, 1165
TaaI	ACNGT	2 cut(s)	971, 1190
TaiI	ACGT	2 cut(s)	602, 1023
TaqI	TCGA	6 cut(s)	483, 906, 1032, 1048, 1159, 1231
TasI	AATT	8 cut(s)	7, 86, 204, 419, 1100, 1219, 1281, 1300
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	2 cut(s)	350, 1233
Tru1I	TTAA	7 cut(s)	203, 335, 405, 723, 806, 1095, 1309
Tru9I	TTAA	7 cut(s)	203, 335, 405, 723, 806, 1095, 1309
TscAI	CASTG	3 cut(s)	178, 304, 1195
TseFI	GTSAC	3 cut(s)	280, 295, 321
TseI	GCWGC	2 cut(s)	530, 911
Tsp45I	GTSAC	3 cut(s)	280, 295, 321
TspDTI	ATGAA	4 cut(s)	342, 439, 913, 1274
TspGWI	ACGGA	2 cut(s)	747, 965
TspRI	CASTG	3 cut(s)	178, 304, 1195
Vha464I	CTTAAG	1 cut(s)	805
VspI	ATTAAT	1 cut(s)	723
XapI	RAATTY	4 cut(s)	7, 86, 1100, 1281
XceI	RCATGY	2 cut(s)	329, 1116
XhoI	CTCGAG	1 cut(s)	1031
XmnI	GAANNNNTTC	2 cut(s)	491, 889
XspI	CTAG	3 cut(s)	56, 624, 654
Zsp2I	ATGCAT	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.