Rh5BG133400

UDP-arabinose 4-epimerase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
13281805 .. 13287469
5665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG133400.1

Sequence Viewer

Length: 1122 bp
ATGACATTTCAAAGATCTAACGTTTTGTTGTGTGAACAATGGATTTCTGTCCAGTTCTCCCGTCGTGAATCAGGAGTAACTCATGTCCTAGTAACAGGAGGTGCTGGATATATTGGTTCACATGCTGCATTACGACTTCTAAAGGATTCATACCGTGTAACTATTGTGGATAACCTCTCACGGGGAAACCTAGGTGCAGTCAAGGTTCTCCAACAATTATTTCCTGAGCCTGGGAGGCTGCAATTTATTTATGCTGACTTGGGGGATCCAAAATCCGTTAACAAAATATTTTCAGAGAATGCATTTGATGCTGTGATGCATTTTGCAGCTGTAGCATATGTCGGGGAAAGCACCCTTGATCCACTTAAGTATTACCACAATATTACATCAAATACCTTGGTAGTAGTAGAGGCAATGGCCAAACATCGTGTGAGGACATTAATATATTCTAGCACATGTGCAACATATGGAGAACCAGAAAAGATGCCTATTACTGAAGAAACTACACAGGTCCCAATTAATCCATATGGAAAAGCTAAGAAGATGGCAGAGGATATTATCCTGGATTTTTCTAAGAATTCAAACATGGCAGTCATGATCCTGAGATATTTCAATGTGATTGGGTCAGATCCAGAGGGCAGATTAGGTGAAGCTCCCAGACCTGAACTTCGTGAGCATGGACGCATATCAGGAGCTTGTTTTGATGCAGCTCGTGGTATTATTCCTGGGCTAAAGGTTAGAGGAACAGACTATAAAACAGCTGATGGCACGTGCATAAGGGACTACATTGATGTCACTGATCTGGTTGATGCCCATGTGAAAGCTCTTGAGCACGCAAGACCCGGTAAAGTGGGAATCTACAACGTCGGCACTGGAAAAGGTAGTTCTGTAAAGGAGTTTGTGGAGGCATGTAAGAAGGCAACTGGGGTGAACATCAAAGTTGATTTCCTTCCCCGCCGGCCTGGTGACTATGCTGAAGTGTACAGTGACCCATCTAAGATCTTGCGTGAACTGAACTGGACAGCACAACACACCAATCTTCAAGAGAGTTTGCAGGTTGCGTGGGGATGGCAAAAGTCGCACCGTGATGGATACGGAACCCCTATGGTAGTGTCTTCTTGA

Protein Analysis

373

Amino Acids

41.26

Weight (kDa)

8.43

Isoelectric Point (pI)

33.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RmlD_sub_bind PF04321 28 - 209 2.2e-12 RmlD substrate binding domain
Epimerase PF01370 29 - 290 1.1e-51 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 29 - 209 5.9e-13 Polysaccharide biosynthesis protein
GDP_Man_Dehyd PF16363 30 - 344 1.7e-51 GDP-mannose 4,6 dehydratase
3Beta_HSD PF01073 30 - 191 1.3e-13 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4 PF07993 31 - 213 6.8e-06 Male sterility protein
NAD_binding_10 PF13460 33 - 206 9.6e-08 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1045
AciI CCGC 1 cut(s) 955
AclI AACGTT 1 cut(s) 21
AclWI GGATC 5 cut(s) 260, 273, 353, 592, 623
AcoI YGGCCR 1 cut(s) 417
AcsI RAATTY 1 cut(s) 577
AcuI CTGAAG 2 cut(s) 516, 996
AcvI CACGTG 1 cut(s) 771
AfaI GTAC 1 cut(s) 983
AfiI CCNNNNNNNGG 2 cut(s) 181, 230
AflII CTTAAG 1 cut(s) 365
AflIII ACRYGT 1 cut(s) 455
AgsI TTSAA 4 cut(s) 11, 582, 613, 1043
AjnI CCWGG 4 cut(s) 229, 561, 724, 961
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AluBI AGCT 7 cut(s) 329, 536, 653, 695, 710, 761, 824
AluI AGCT 7 cut(s) 329, 536, 653, 695, 710, 761, 824
Alw21I GWGCWC 1 cut(s) 834
AlwI GGATC 5 cut(s) 260, 273, 353, 592, 623
AoxI GGCC 2 cut(s) 417, 959
ApeKI GCWGC 4 cut(s) 125, 238, 326, 707
ApoI RAATTY 1 cut(s) 577
ArsI GACNNNNNNTTYG 2 cut(s) 651, 683
AseI ATTAAT 2 cut(s) 440, 519
AspA2I CCTAGG 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 511
AsuC2I CCSGG 1 cut(s) 843
AsuHPI GGTGA 3 cut(s) 659, 940, 977
AvaII GGWCC 1 cut(s) 511
AvrII CCTAGG 1 cut(s) 190
BalI TGGCCA 1 cut(s) 419
BamHI GGATCC 1 cut(s) 265
BauI CACGAG 1 cut(s) 711
BbrPI CACGTG 1 cut(s) 771
BbsI GAAGAC 1 cut(s) 1107
Bbv12I GWGCWC 1 cut(s) 834
BbvI GCAGC 4 cut(s) 112, 225, 338, 719
BccI CCATC 5 cut(s) 538, 758, 1000, 1062, 1082
BciT130I CCWGG 4 cut(s) 231, 563, 726, 963
BciVI GTATCC 1 cut(s) 1085
BcnI CCSGG 1 cut(s) 843
BfaI CTAG 3 cut(s) 89, 191, 450
BfmI CTRYAG 1 cut(s) 330
BfrI CTTAAG 1 cut(s) 365
BfuAI ACCTGC 1 cut(s) 1045
BfuI GTATCC 1 cut(s) 1085
BglI GCCNNNNNGGC 1 cut(s) 235
BglII AGATCT 2 cut(s) 14, 999
BisI GCNGC 4 cut(s) 126, 239, 327, 708
BlnI CCTAGG 1 cut(s) 190
BlsI GCNGC 4 cut(s) 127, 240, 328, 709
Bme1390I CCNGG 5 cut(s) 231, 563, 726, 843, 963
Bme18I GGWCC 1 cut(s) 511
BmgT120I GGNCC 1 cut(s) 511
BmiI GGNNCC 3 cut(s) 267, 513, 1099
BmrFI CCNGG 5 cut(s) 231, 563, 726, 843, 963
BmrI ACTGGG 1 cut(s) 933
BmsI GCATC 5 cut(s) 298, 306, 474, 694, 799
BmuI ACTGGG 1 cut(s) 933
BpiI GAAGAC 1 cut(s) 1107
Bpu10I CCTNAGC 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 848
BpuMI CCSGG 1 cut(s) 843
BsaAI YACGTR 1 cut(s) 771
BsaJI CCNNGG 4 cut(s) 190, 230, 396, 725
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 230
Bse118I RCCGGY 1 cut(s) 957
Bse1I ACTGG 4 cut(s) 52, 877, 928, 1022
Bse3DI GCAATG 1 cut(s) 420
BseBI CCWGG 4 cut(s) 231, 563, 726, 963
BseDI CCNNGG 4 cut(s) 190, 230, 396, 725
BseGI GGATG 1 cut(s) 1073
BseLI CCNNNNNNNGG 2 cut(s) 181, 230
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 2 cut(s) 216, 593
BseNI ACTGG 4 cut(s) 52, 877, 928, 1022
BseXI GCAGC 4 cut(s) 112, 225, 338, 719
BsgI GTGCAG 1 cut(s) 216
BshFI GGCC 2 cut(s) 419, 961
BsiHKAI GWGCWC 1 cut(s) 834
BsiSI CCGG 2 cut(s) 843, 958
BslFI GGGAC 2 cut(s) 497, 794
BslI CCNNNNNNNGG 2 cut(s) 181, 230
BsmFI GGGAC 2 cut(s) 497, 794
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 2 cut(s) 419, 961
Bsp1286I GDGCHC 1 cut(s) 834
Bsp1407I TGTACA 1 cut(s) 981
Bsp143I GATC 7 cut(s) 14, 265, 358, 597, 628, 799, 999
BspACI CCGC 1 cut(s) 955
BspANI GGCC 2 cut(s) 419, 961
BspCNI CTCAG 2 cut(s) 217, 594
BspHI TCATGA 1 cut(s) 594
BspLI GGNNCC 3 cut(s) 267, 513, 1099
BspMI ACCTGC 1 cut(s) 1045
BspPI GGATC 5 cut(s) 260, 273, 353, 592, 623
BspTI CTTAAG 1 cut(s) 365
BsrDI GCAATG 1 cut(s) 420
BsrFI RCCGGY 1 cut(s) 957
BsrGI TGTACA 1 cut(s) 981
BsrI ACTGG 4 cut(s) 52, 877, 928, 1022
BssAI RCCGGY 1 cut(s) 957
BssECI CCNNGG 4 cut(s) 190, 230, 396, 725
BssMI GATC 7 cut(s) 14, 265, 358, 597, 628, 799, 999
BssSI CACGAG 1 cut(s) 711
BssT1I CCWWGG 2 cut(s) 190, 396
Bst2BI CACGAG 1 cut(s) 711
Bst2UI CCWGG 4 cut(s) 231, 563, 726, 963
Bst4CI ACNGT 3 cut(s) 155, 986, 1085
BstAFI CTTAAG 1 cut(s) 365
BstAPI GCANNNNNTGC 1 cut(s) 308
BstAUI TGTACA 1 cut(s) 981
BstBAI YACGTR 1 cut(s) 771
BstC8I GCNNGC 2 cut(s) 834, 959
BstDEI CTNAG 5 cut(s) 225, 537, 573, 602, 996
BstF5I GGATG 1 cut(s) 1073
BstKTI GATC 7 cut(s) 17, 268, 361, 600, 631, 802, 1002
BstMBI GATC 7 cut(s) 14, 265, 358, 597, 628, 799, 999
BstMWI GCNNNNNNNGC 4 cut(s) 235, 308, 332, 1078
BstNI CCWGG 4 cut(s) 231, 563, 726, 963
BstNSI RCATGY 3 cut(s) 125, 459, 912
BstSCI CCNGG 5 cut(s) 229, 561, 724, 841, 961
BstSFI CTRYAG 1 cut(s) 330
BstV1I GCAGC 4 cut(s) 112, 225, 338, 719
BstV2I GAAGAC 1 cut(s) 1107
BstX2I RGATCY 4 cut(s) 14, 265, 628, 999
BstYI RGATCY 4 cut(s) 14, 265, 628, 999
BsuI GTATCC 1 cut(s) 1085
BsuRI GGCC 2 cut(s) 419, 961
BtsCI GGATG 1 cut(s) 1073
BtsIMutI CAGTG 3 cut(s) 795, 870, 991
BveI ACCTGC 1 cut(s) 1045
Cac8I GCNNGC 2 cut(s) 834, 959
CciI TCATGA 1 cut(s) 594
Cfr10I RCCGGY 1 cut(s) 957
Cfr13I GGNCC 1 cut(s) 511
CseI GACGC 1 cut(s) 690
Csp6I GTAC 1 cut(s) 982
CviAII CATG 8 cut(s) 83, 122, 456, 586, 595, 677, 815, 909
CviQI GTAC 1 cut(s) 982
DdeI CTNAG 5 cut(s) 225, 537, 573, 602, 996
DpnI GATC 7 cut(s) 16, 267, 360, 599, 630, 801, 1001
DpnII GATC 7 cut(s) 14, 265, 358, 597, 628, 799, 999
EaeI YGGCCR 1 cut(s) 417
Eco130I CCWWGG 2 cut(s) 190, 396
Eco47I GGWCC 1 cut(s) 511
Eco57I CTGAAG 2 cut(s) 516, 996
Eco72I CACGTG 1 cut(s) 771
EcoO109I RGGNCCY 1 cut(s) 511
EcoRI GAATTC 1 cut(s) 577
EcoRII CCWGG 4 cut(s) 229, 561, 724, 961
EcoT14I CCWWGG 2 cut(s) 190, 396
EcoT22I ATGCAT 2 cut(s) 304, 321
ErhI CCWWGG 2 cut(s) 190, 396
FaeI CATG 8 cut(s) 86, 125, 459, 589, 598, 680, 818, 912
FaqI GGGAC 2 cut(s) 497, 794
FatI CATG 8 cut(s) 82, 121, 455, 585, 594, 676, 814, 908
FauI CCCGC 1 cut(s) 962
FauNDI CATATG 3 cut(s) 337, 466, 526
Fnu4HI GCNGC 4 cut(s) 126, 239, 327, 708
FokI GGATG 1 cut(s) 1080
Fsp4HI GCNGC 4 cut(s) 126, 239, 327, 708
FspBI CTAG 3 cut(s) 89, 191, 450
GluI GCNGC 4 cut(s) 126, 239, 327, 708
HaeIII GGCC 2 cut(s) 419, 961
HapII CCGG 2 cut(s) 843, 958
HgaI GACGC 1 cut(s) 690
Hin1II CATG 8 cut(s) 86, 125, 459, 589, 598, 680, 818, 912
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 3 cut(s) 68, 146, 855
HpaI GTTAAC 1 cut(s) 280
HpaII CCGG 2 cut(s) 843, 958
HphI GGTGA 3 cut(s) 659, 940, 977
Hpy166II GTNNAC 6 cut(s) 35, 119, 280, 931, 982, 1010
Hpy188I TCNGA 2 cut(s) 295, 628
Hpy8I GTNNAC 6 cut(s) 35, 119, 280, 931, 982, 1010
Hpy99I CGWCG 2 cut(s) 66, 869
HpyAV CCTTC 2 cut(s) 910, 959
HpyCH4III ACNGT 3 cut(s) 155, 986, 1085
HpyCH4IV ACGT 3 cut(s) 21, 770, 864
HpyF10VI GCNNNNNNNGC 4 cut(s) 235, 308, 332, 1078
HpyF3I CTNAG 5 cut(s) 225, 537, 573, 602, 996
HpySE526I ACGT 3 cut(s) 21, 770, 864
Hsp92II CATG 8 cut(s) 86, 125, 459, 589, 598, 680, 818, 912
KroI GCCGGC 1 cut(s) 957
KroNI GCCGGC 1 cut(s) 959
KspAI GTTAAC 1 cut(s) 280
Kzo9I GATC 7 cut(s) 14, 265, 358, 597, 628, 799, 999
LmnI GCTCC 2 cut(s) 658, 692
Lsp1109I GCAGC 4 cut(s) 112, 225, 338, 719
LweI GCATC 5 cut(s) 298, 306, 474, 694, 799
MaeI CTAG 3 cut(s) 89, 191, 450
MaeII ACGT 3 cut(s) 21, 770, 864
MaeIII GTNAC 6 cut(s) 76, 91, 157, 793, 965, 986
MalI GATC 7 cut(s) 16, 267, 360, 599, 630, 801, 1001
MboI GATC 7 cut(s) 14, 265, 358, 597, 628, 799, 999
MboII GAAGA 4 cut(s) 509, 553, 1031, 1107
MflI RGATCY 4 cut(s) 14, 265, 628, 999
MhlI GDGCHC 1 cut(s) 834
MlsI TGGCCA 1 cut(s) 419
MluCI AATT 4 cut(s) 215, 242, 516, 577
MluNI TGGCCA 1 cut(s) 419
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 9 cut(s) 92, 185, 228, 403, 426, 544, 628, 734, 898
Mox20I TGGCCA 1 cut(s) 419
Mph1103I ATGCAT 2 cut(s) 304, 321
MroNI GCCGGC 1 cut(s) 957
MscI TGGCCA 1 cut(s) 419
MseI TTAA 4 cut(s) 279, 366, 440, 519
MslI CAYNNNNRTG 1 cut(s) 1086
Msp20I TGGCCA 1 cut(s) 419
MspA1I CMGCKG 2 cut(s) 329, 761
MspCI CTTAAG 1 cut(s) 365
MspI CCGG 2 cut(s) 843, 958
MspR9I CCNGG 5 cut(s) 231, 563, 726, 843, 963
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 4 cut(s) 231, 563, 726, 963
MwoI GCNNNNNNNGC 4 cut(s) 235, 308, 332, 1078
NaeI GCCGGC 1 cut(s) 959
NciI CCSGG 1 cut(s) 843
NdeI CATATG 3 cut(s) 337, 466, 526
NdeII GATC 7 cut(s) 14, 265, 358, 597, 628, 799, 999
NgoMIV GCCGGC 1 cut(s) 957
NlaIII CATG 8 cut(s) 86, 125, 459, 589, 598, 680, 818, 912
NlaIV GGNNCC 3 cut(s) 267, 513, 1099
NmuCI GTSAC 3 cut(s) 793, 965, 986
NsiI ATGCAT 2 cut(s) 304, 321
NspI RCATGY 3 cut(s) 125, 459, 912
PagI TCATGA 1 cut(s) 594
PciI ACATGT 1 cut(s) 455
PctI GAATGC 1 cut(s) 304
PdiI GCCGGC 1 cut(s) 959
PfeI GAWTC 3 cut(s) 68, 146, 855
PfoI TCCNGGA 1 cut(s) 561
PkrI GCNGC 4 cut(s) 127, 240, 328, 709
PmaCI CACGTG 1 cut(s) 771
PmlI CACGTG 1 cut(s) 771
Ppu21I YACGTR 1 cut(s) 771
PpuMI RGGWCCY 1 cut(s) 511
PscI ACATGT 1 cut(s) 455
PshBI ATTAAT 2 cut(s) 440, 519
Psp1406I AACGTT 1 cut(s) 21
Psp5II RGGWCCY 1 cut(s) 511
Psp6I CCWGG 4 cut(s) 229, 561, 724, 961
PspCI CACGTG 1 cut(s) 771
PspGI CCWGG 4 cut(s) 229, 561, 724, 961
PspN4I GGNNCC 3 cut(s) 267, 513, 1099
PspPI GGNCC 1 cut(s) 511
PspPPI RGGWCCY 1 cut(s) 511
PsuI RGATCY 4 cut(s) 14, 265, 628, 999
PvuII CAGCTG 2 cut(s) 329, 761
RsaI GTAC 1 cut(s) 983
RsaNI GTAC 1 cut(s) 982
RseI CAYNNNNRTG 1 cut(s) 1086
SaqAI TTAA 4 cut(s) 279, 366, 440, 519
SatI GCNGC 4 cut(s) 126, 239, 327, 708
Sau3AI GATC 7 cut(s) 14, 265, 358, 597, 628, 799, 999
Sau96I GGNCC 1 cut(s) 511
ScrFI CCNGG 5 cut(s) 231, 563, 726, 843, 963
SduI GDGCHC 1 cut(s) 834
SfaNI GCATC 5 cut(s) 298, 306, 474, 694, 799
SfcI CTRYAG 1 cut(s) 330
SinI GGWCC 1 cut(s) 511
SmiMI CAYNNNNRTG 1 cut(s) 1086
SmlI CTYRAG 2 cut(s) 365, 827
SmoI CTYRAG 2 cut(s) 365, 827
Sse9I AATT 4 cut(s) 215, 242, 516, 577
SsiI CCGC 1 cut(s) 955
SspI AATATT 2 cut(s) 288, 382
SspMI CTAG 3 cut(s) 89, 191, 450
StyD4I CCNGG 5 cut(s) 229, 561, 724, 841, 961
StyI CCWWGG 2 cut(s) 190, 396
TaaI ACNGT 3 cut(s) 155, 986, 1085
TaiI ACGT 3 cut(s) 24, 773, 867
TasI AATT 4 cut(s) 215, 242, 516, 577
TatI WGTACW 1 cut(s) 981
TfiI GAWTC 3 cut(s) 68, 146, 855
Tru1I TTAA 4 cut(s) 279, 366, 440, 519
Tru9I TTAA 4 cut(s) 279, 366, 440, 519
TscAI CASTG 3 cut(s) 802, 877, 991
TseFI GTSAC 3 cut(s) 793, 965, 986
TseI GCWGC 4 cut(s) 125, 238, 326, 707
Tsp45I GTSAC 3 cut(s) 793, 965, 986
TspDTI ATGAA 1 cut(s) 138
TspGWI ACGGA 2 cut(s) 265, 1110
TspRI CASTG 3 cut(s) 802, 877, 991
Vha464I CTTAAG 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 511
VspI ATTAAT 2 cut(s) 440, 519
XapI RAATTY 1 cut(s) 577
XceI RCATGY 3 cut(s) 125, 459, 912
XmaJI CCTAGG 1 cut(s) 190
XspI CTAG 3 cut(s) 89, 191, 450
Zsp2I ATGCAT 2 cut(s) 304, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.