Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003112

Physical Location & Seq

Genomic Coordinates Forward (+)

3561584 .. 3564966

Gene Structure 3383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0041300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGACTGAAGTTAATGGGATCAAGGCTCCAGAGAAGCTTGAGGGGCATTTTAAAGCTATGGCAATTTGTTGGCTCCTCGGACTAGGGTCCTTAGTCGCATGGAACAGTGTTCTGACTATAGGTGATTACTATGGAATATTGTTTCCGAAATACCATCCTTCGAGGGTTCTCACCCTGGTTTATCAACCATTTGCATTTATATCAATGGGAATACTAGCATACAAGGAAGCAACAGTTAATACCAGAAAGAGGATCTTAATTGGATACACTCTCTTCTTTCTTGGTACCTTGATGATGATAGTTGTGGATGTTGCTACATCTGGCAGAGGAGGAATTGGACCTTATATTGGTATATGTGCAATGGTTGGTGTATTTGGGATTGCAGATGGTCATGTTCAAGGTGGAGTCATTGGTGATTTATCCTTGATGCGCCCTGAGTTCATCCAGTCCTTCTTTGCTGGCTTGGCTGCATCAGGTGCTCTAACCTCTGCCTTGAGGCTGATGACAAGGGCTGCCTTTGAGAAGTATCATGATGGTCTTCGCAAGGGAACAATGATGTTCTTGGCCCTTTCCACATTCATCGAGTTCCTGTGTATATTTCTGTATGCAACTTACTTCTCTAAGTTACCCATAGTAAAGTACTACCGCTCAAAGGCAGCGTCGGAAGGCTCCAAAACTGTTATGGCTGATCTTGCTGCCGGTGGCATTCAAACACAAGCAGACATAGAAGCAATTCCACAACGATTGACCACTAAGCAATTATTCATTCAGAATTATGATTATGCACTTGGCTTGTTTCTGATATATGCATTGACATTATCAATCTTCCCTGGTTTCCTTTTTGAAAACACTGGAAAACACCAATTGGGCACATGGTATCCCCTTGTTCTGATCGCAATGTACAACGTGTTGGATTTTATATCGAGATACACACCTCTTATACCATGCTTGAAGATTGAAAACAGAAAGGGGCTCATGGTTGCAATTGGACTGCGTTTTCTCTTCGTTCCAGCGTTCTACTTCACCGCAAAATACGCTGACCAAGGTTGGATGATCCTGCTCACCTCAATCTTGGGTTTTACAAATGGTCATCTTACTGTTTGTCTCATGACAGTGGCACCAAAAGGCTACACGGGACCTGAGCAGAATGCCTTGGGCAATGTCCTTGCTTTCTGCCTTATGTGCGGCATATTTGCCGGGGTTTTACTCGATTGGTTATGGCTCATCGGCAACGGCAAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

414

Amino Acids

45.67

Weight (kDa)

9.07

Isoelectric Point (pI)

28.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoside_tran	PF01733	120 - 407	1.7e-28	Nucleoside transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20460 AT5G44480 AT5G44480 AT5G44480 AT5G44480
fragaria_vesca	FvH4_3g11380 FvH4_3g11380 FvH4_3g11380 FvH4_3g11380 FvH4_3g11380 FvH4_3g11380
malus_domestica	MD05G1263800.v1.1 MD10G1241500.v1.1
prunus_persica	Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1
pyrus_communis	pycom05g24780 pycom10g20250
rosa_chinensis	RchiOBHm_Chr5g0018331
rosa_laevigata	RLG00000032352
rosa_multiflora	Rmu_sc0011919.1_g000008
rosa_roxburghii	Rroxscaffold_1G00059410
rosa_rugosa	Rorug05G0041300 Rorug05G0041300 Rorug05G0041400 Rorug05G0041500
rosa_samantha	Rh5AG134800 Rh5BG133400 Rh5CG145200 Rh5DG134800
rosa_wichuraiana	Rw5G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	284
AccB1I	GGYRCC	2 cut(s)	284, 1117
AccBSI	CCGCTC	1 cut(s)	648
AciI	CCGC	3 cut(s)	646, 1026, 1185
AclWI	GGATC	3 cut(s)	26, 260, 1048
AcsI	RAATTY	1 cut(s)	1238
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	3 cut(s)	286, 641, 902
AfiI	CCNNNNNNNGG	3 cut(s)	249, 347, 652
AflIII	ACRYGT	1 cut(s)	906
AgsI	TTSAA	5 cut(s)	398, 710, 845, 952, 959
AjnI	CCWGG	2 cut(s)	174, 829
AluBI	AGCT	2 cut(s)	37, 56
AluI	AGCT	2 cut(s)	37, 56
Alw21I	GWGCWC	1 cut(s)	481
Alw26I	GTCTC	1 cut(s)	1109
AlwI	GGATC	3 cut(s)	26, 260, 1048
AoxI	GGCC	1 cut(s)	564
ApeKI	GCWGC	4 cut(s)	467, 512, 656, 695
ApoI	RAATTY	1 cut(s)	1238
ArsI	GACNNNNNNTTYG	2 cut(s)	644, 676
Asp700I	GAANNNNTTC	1 cut(s)	732
Asp718I	GGTACC	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	4 cut(s)	87, 338, 565, 1136
AsuC2I	CCSGG	1 cut(s)	1198
AsuHPI	GGTGA	5 cut(s)	134, 163, 425, 1015, 1054
AvaII	GGWCC	3 cut(s)	87, 338, 1136
BaeGI	GKGCMC	1 cut(s)	872
BanI	GGYRCC	2 cut(s)	284, 1117
BanII	GRGCYC	1 cut(s)	975
BbsI	GAAGAC	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	481
BbvI	GCAGC	4 cut(s)	454, 499, 668, 682
BccI	CCATC	3 cut(s)	162, 380, 527
BciT130I	CCWGG	2 cut(s)	176, 831
BciVI	GTATCC	2 cut(s)	257, 888
BcnI	CCSGG	1 cut(s)	1198
BcoDI	GTCTC	1 cut(s)	1109
BfaI	CTAG	2 cut(s)	83, 215
BfmI	CTRYAG	1 cut(s)	117
BfuI	GTATCC	2 cut(s)	257, 888
BisI	GCNGC	5 cut(s)	468, 513, 657, 696, 1186
BlsI	GCNGC	5 cut(s)	469, 514, 658, 697, 1187
BmcAI	AGTACT	1 cut(s)	641
Bme1390I	CCNGG	3 cut(s)	176, 831, 1198
Bme18I	GGWCC	3 cut(s)	87, 338, 1136
BmgT120I	GGNCC	4 cut(s)	87, 338, 565, 1136
BmiI	GGNNCC	7 cut(s)	27, 74, 88, 286, 670, 1119, 1137
BmrFI	CCNGG	3 cut(s)	176, 831, 1198
BmsI	GCATC	2 cut(s)	417, 479
BoxI	GACNNNNGTC	1 cut(s)	85
BpiI	GAAGAC	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	12
Bpu10I	CCTNAGC	1 cut(s)	1140
BpuEI	CTTGAG	2 cut(s)	59, 514
BpuMI	CCSGG	1 cut(s)	1198
BsaJI	CCNNGG	6 cut(s)	76, 174, 829, 1042, 1152, 1197
Bsc4I	CCNNNNNNNGG	3 cut(s)	249, 347, 652
Bse118I	RCCGGY	1 cut(s)	698
Bse1I	ACTGG	2 cut(s)	445, 856
Bse3DI	GCAATG	3 cut(s)	366, 903, 1165
BseBI	CCWGG	2 cut(s)	176, 831
BseDI	CCNNGG	6 cut(s)	76, 174, 829, 1042, 1152, 1197
BseGI	GGATG	4 cut(s)	154, 313, 441, 1056
BseLI	CCNNNNNNNGG	3 cut(s)	249, 347, 652
BseMI	GCAATG	3 cut(s)	366, 903, 1165
BseMII	CTCAG	2 cut(s)	426, 1131
BseNI	ACTGG	2 cut(s)	445, 856
BseRI	GAGGAG	2 cut(s)	65, 342
BseSI	GKGCMC	1 cut(s)	872
BseXI	GCAGC	4 cut(s)	454, 499, 668, 682
BshFI	GGCC	1 cut(s)	566
BshNI	GGYRCC	2 cut(s)	284, 1117
BsiHKAI	GWGCWC	1 cut(s)	481
BsiSI	CCGG	2 cut(s)	699, 1197
BslFI	GGGAC	1 cut(s)	1149
BslI	CCNNNNNNNGG	3 cut(s)	249, 347, 652
BsmAI	GTCTC	1 cut(s)	1109
BsmFI	GGGAC	1 cut(s)	1149
BsmI	GAATGC	2 cut(s)	705, 1153
BsnI	GGCC	1 cut(s)	566
Bsp1286I	GDGCHC	3 cut(s)	481, 872, 975
Bsp1407I	TGTACA	1 cut(s)	900
Bsp143I	GATC	5 cut(s)	18, 252, 688, 891, 1053
BspACI	CCGC	3 cut(s)	646, 1026, 1185
BspANI	GGCC	1 cut(s)	566
BspCNI	CTCAG	2 cut(s)	427, 1132
BspHI	TCATGA	2 cut(s)	529, 1107
BspLI	GGNNCC	7 cut(s)	27, 74, 88, 286, 670, 1119, 1137
BspPI	GGATC	3 cut(s)	26, 260, 1048
BspT107I	GGYRCC	2 cut(s)	284, 1117
BsrBI	CCGCTC	1 cut(s)	648
BsrDI	GCAATG	3 cut(s)	366, 903, 1165
BsrFI	RCCGGY	1 cut(s)	698
BsrGI	TGTACA	1 cut(s)	900
BsrI	ACTGG	2 cut(s)	445, 856
BssAI	RCCGGY	1 cut(s)	698
BssECI	CCNNGG	6 cut(s)	76, 174, 829, 1042, 1152, 1197
BssMI	GATC	5 cut(s)	18, 252, 688, 891, 1053
BssT1I	CCWWGG	2 cut(s)	1042, 1152
Bst2UI	CCWGG	2 cut(s)	176, 831
Bst4CI	ACNGT	5 cut(s)	107, 235, 679, 1099, 1114
Bst6I	CTCTTC	2 cut(s)	278, 1007
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstAUI	TGTACA	1 cut(s)	900
BstC8I	GCNNGC	1 cut(s)	460
BstDEI	CTNAG	5 cut(s)	91, 435, 621, 753, 1140
BstF5I	GGATG	4 cut(s)	154, 313, 441, 1056
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	5 cut(s)	21, 255, 691, 894, 1056
BstMAI	GTCTC	1 cut(s)	1109
BstMBI	GATC	5 cut(s)	18, 252, 688, 891, 1053
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 464, 476, 692, 1034, 1182
BstNI	CCWGG	2 cut(s)	176, 831
BstPAI	GACNNNNGTC	1 cut(s)	85
BstSCI	CCNGG	3 cut(s)	174, 829, 1196
BstSFI	CTRYAG	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	872
BstV1I	GCAGC	4 cut(s)	454, 499, 668, 682
BstV2I	GAAGAC	1 cut(s)	530
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
BsuI	GTATCC	2 cut(s)	257, 888
BsuRI	GGCC	1 cut(s)	566
BtsCI	GGATG	4 cut(s)	154, 313, 441, 1056
BtsIMutI	CAGTG	3 cut(s)	112, 849, 1119
Cac8I	GCNNGC	1 cut(s)	460
CciI	TCATGA	2 cut(s)	529, 1107
CfoI	GCGC	1 cut(s)	432
Cfr10I	RCCGGY	1 cut(s)	698
Cfr13I	GGNCC	4 cut(s)	87, 338, 565, 1136
CseI	GACGC	1 cut(s)	648
Csp6I	GTAC	3 cut(s)	285, 640, 901
CspCI	CAANNNNNGTGG	2 cut(s)	726, 761
CviAII	CATG	7 cut(s)	99, 392, 530, 873, 945, 976, 1108
CviQI	GTAC	3 cut(s)	285, 640, 901
DdeI	CTNAG	5 cut(s)	91, 435, 621, 753, 1140
DpnI	GATC	5 cut(s)	20, 254, 690, 893, 1055
DpnII	GATC	5 cut(s)	18, 252, 688, 891, 1053
DraI	TTTAAA	1 cut(s)	52
Eam1104I	CTCTTC	2 cut(s)	278, 1007
EarI	CTCTTC	2 cut(s)	278, 1007
Eco130I	CCWWGG	2 cut(s)	1042, 1152
Eco24I	GRGCYC	1 cut(s)	975
Eco47I	GGWCC	3 cut(s)	87, 338, 1136
Eco57I	CTGAAG	1 cut(s)	27
EcoO109I	RGGNCCY	2 cut(s)	87, 1136
EcoRII	CCWGG	2 cut(s)	174, 829
EcoT14I	CCWWGG	2 cut(s)	1042, 1152
EcoT22I	ATGCAT	1 cut(s)	811
EcoT38I	GRGCYC	1 cut(s)	975
ErhI	CCWWGG	2 cut(s)	1042, 1152
FaeI	CATG	7 cut(s)	102, 395, 533, 876, 948, 979, 1111
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FaqI	GGGAC	1 cut(s)	1149
FatI	CATG	7 cut(s)	98, 391, 529, 872, 944, 975, 1107
Fnu4HI	GCNGC	5 cut(s)	468, 513, 657, 696, 1186
FokI	GGATG	4 cut(s)	141, 320, 428, 1063
FriOI	GRGCYC	1 cut(s)	975
Fsp4HI	GCNGC	5 cut(s)	468, 513, 657, 696, 1186
FspBI	CTAG	2 cut(s)	83, 215
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	5 cut(s)	468, 513, 657, 696, 1186
GsuI	CTGGAG	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	566
HapII	CCGG	2 cut(s)	699, 1197
HgaI	GACGC	1 cut(s)	648
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	7 cut(s)	102, 395, 533, 876, 948, 979, 1111
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	1 cut(s)	405
HpaII	CCGG	2 cut(s)	699, 1197
HphI	GGTGA	5 cut(s)	134, 163, 425, 1015, 1054
Hpy188I	TCNGA	7 cut(s)	80, 114, 147, 664, 771, 801, 891
Hpy188III	TCNNGA	4 cut(s)	29, 530, 924, 1108
Hpy99I	CGWCG	1 cut(s)	664
HpyAV	CCTTC	3 cut(s)	168, 460, 659
HpyCH4III	ACNGT	5 cut(s)	107, 235, 679, 1099, 1114
HpyCH4IV	ACGT	1 cut(s)	906
HpyCH4V	TGCA	8 cut(s)	194, 359, 383, 470, 608, 785, 809, 983
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 464, 476, 692, 1034, 1182
HpyF3I	CTNAG	5 cut(s)	91, 435, 621, 753, 1140
HpySE526I	ACGT	1 cut(s)	906
Hsp92II	CATG	7 cut(s)	102, 395, 533, 876, 948, 979, 1111
HspAI	GCGC	1 cut(s)	430
KpnI	GGTACC	1 cut(s)	288
Kzo9I	GATC	5 cut(s)	18, 252, 688, 891, 1053
LmnI	GCTCC	3 cut(s)	31, 78, 674
Lsp1109I	GCAGC	4 cut(s)	454, 499, 668, 682
LweI	GCATC	2 cut(s)	417, 479
MaeI	CTAG	2 cut(s)	83, 215
MaeII	ACGT	1 cut(s)	906
MaeIII	GTNAC	1 cut(s)	624
MalI	GATC	5 cut(s)	20, 254, 690, 893, 1055
MbiI	CCGCTC	1 cut(s)	648
MboI	GATC	5 cut(s)	18, 252, 688, 891, 1053
MboII	GAAGA	5 cut(s)	265, 530, 817, 964, 994
MfeI	CAATTG	2 cut(s)	863, 984
MflI	RGATCY	1 cut(s)	252
MhlI	GDGCHC	3 cut(s)	481, 872, 975
MluCI	AATT	9 cut(s)	63, 258, 333, 732, 758, 772, 863, 984, 1238
MlyI	GAGTC	1 cut(s)	414
MmeI	TCCRAC	3 cut(s)	642, 891, 1028
Mph1103I	ATGCAT	1 cut(s)	811
MroXI	GAANNNNTTC	1 cut(s)	732
MseI	TTAA	5 cut(s)	12, 51, 237, 257, 1243
MslI	CAYNNNNRTG	1 cut(s)	1112
MspI	CCGG	2 cut(s)	699, 1197
MspR9I	CCNGG	3 cut(s)	176, 831, 1198
MunI	CAATTG	2 cut(s)	863, 984
Mva1269I	GAATGC	2 cut(s)	705, 1153
MvaI	CCWGG	2 cut(s)	176, 831
MwoI	GCNNNNNNNGC	6 cut(s)	43, 464, 476, 692, 1034, 1182
NciI	CCSGG	1 cut(s)	1198
NdeII	GATC	5 cut(s)	18, 252, 688, 891, 1053
NlaIII	CATG	7 cut(s)	102, 395, 533, 876, 948, 979, 1111
NlaIV	GGNNCC	7 cut(s)	27, 74, 88, 286, 670, 1119, 1137
NsiI	ATGCAT	1 cut(s)	811
PagI	TCATGA	2 cut(s)	529, 1107
PctI	GAATGC	2 cut(s)	705, 1153
PdmI	GAANNNNTTC	1 cut(s)	732
PkrI	GCNGC	5 cut(s)	469, 514, 658, 697, 1187
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
PpuMI	RGGWCCY	2 cut(s)	87, 1136
PshAI	GACNNNNGTC	1 cut(s)	85
Psp5II	RGGWCCY	2 cut(s)	87, 1136
Psp6I	CCWGG	2 cut(s)	174, 829
PspGI	CCWGG	2 cut(s)	174, 829
PspN4I	GGNNCC	7 cut(s)	27, 74, 88, 286, 670, 1119, 1137
PspPI	GGNCC	4 cut(s)	87, 338, 565, 1136
PspPPI	RGGWCCY	2 cut(s)	87, 1136
PsuI	RGATCY	1 cut(s)	252
RsaI	GTAC	3 cut(s)	286, 641, 902
RsaNI	GTAC	3 cut(s)	285, 640, 901
RseI	CAYNNNNRTG	1 cut(s)	1112
SaqAI	TTAA	5 cut(s)	12, 51, 237, 257, 1243
SatI	GCNGC	5 cut(s)	468, 513, 657, 696, 1186
Sau3AI	GATC	5 cut(s)	18, 252, 688, 891, 1053
Sau96I	GGNCC	4 cut(s)	87, 338, 565, 1136
ScaI	AGTACT	1 cut(s)	641
SchI	GAGTC	1 cut(s)	414
ScrFI	CCNGG	3 cut(s)	176, 831, 1198
SduI	GDGCHC	3 cut(s)	481, 872, 975
SfaNI	GCATC	2 cut(s)	417, 479
SfcI	CTRYAG	1 cut(s)	117
SinI	GGWCC	3 cut(s)	87, 338, 1136
SmiMI	CAYNNNNRTG	1 cut(s)	1112
SmlI	CTYRAG	2 cut(s)	38, 493
SmoI	CTYRAG	2 cut(s)	38, 493
Sse9I	AATT	9 cut(s)	63, 258, 333, 732, 758, 772, 863, 984, 1238
SsiI	CCGC	3 cut(s)	646, 1026, 1185
SspI	AATATT	1 cut(s)	138
SspMI	CTAG	2 cut(s)	83, 215
StyD4I	CCNGG	3 cut(s)	174, 829, 1196
StyI	CCWWGG	2 cut(s)	1042, 1152
TaaI	ACNGT	5 cut(s)	107, 235, 679, 1099, 1114
TaiI	ACGT	1 cut(s)	909
TaqI	TCGA	4 cut(s)	161, 582, 923, 1209
TasI	AATT	9 cut(s)	63, 258, 333, 732, 758, 772, 863, 984, 1238
TatI	WGTACW	2 cut(s)	639, 900
TauI	GCSGC	1 cut(s)	1188
Tru1I	TTAA	5 cut(s)	12, 51, 237, 257, 1243
Tru9I	TTAA	5 cut(s)	12, 51, 237, 257, 1243
TscAI	CASTG	3 cut(s)	112, 856, 1119
TseI	GCWGC	4 cut(s)	467, 512, 656, 695
TspDTI	ATGAA	3 cut(s)	430, 568, 754
TspRI	CASTG	3 cut(s)	112, 856, 1119
VpaK11BI	GGWCC	3 cut(s)	87, 338, 1136
XapI	RAATTY	1 cut(s)	1238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	679
XmnI	GAANNNNTTC	1 cut(s)	732
XspI	CTAG	2 cut(s)	83, 215
ZrmI	AGTACT	1 cut(s)	641
Zsp2I	ATGCAT	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.