Prupe.4G101700_v2.0.a1

UDP-arabinose 4-epimerase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
5198166 .. 5204827
6662 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G101700.6

Sequence Viewer

Length: 1344 bp
ATGAACTCGCTGAGAAATCTCCGCCTATTAGAATTACAAGCCTCTCCTTTTCTTTCTCTCTCTCTTTATTTTCAAACGCCAAGGCCACCCACAACAACAACAACAACGATACCTCAGCTCGTGACCCTCTTCTCTTTTTCCTTTGCTCATTGCATGGATTATCCAGATCCCAAGAGGAAGAACAATTTCGTAGGAAAAATTCTTCTGGCTGCTACCCTTACAGCATTATGCATTATCATGCTGAAACAGTCCCCATCTTTCAATACCCCAAGCATGTTCTCCCTTCATGAATCAGGGGTAACCCATGTCCTAGTAACAGGAGGTGCTGGATATATTGGTTCACATGCTGCATTTCGACTTCTAAAGGATTCATATCGTGTAACTATCGTGGATAACCTCTCACGGGGAAACCTAGGTGCAATCAAGGTTCTCCAAGAACTATTTCCTGAACCTGGAAGGCTTCAGTTTATTTATGCTGACTTGGGGGATGCAAAATCCGTTAACAAAATTTTTTCAGAAAATGCTTTTGATGCTGTGATGCATTTTGCAGCTGTTGCATACGTGGGGGAAAGCACCCTTGATCCACTTAAGTATTACCACAATATTACGTCGAATACCTTGGTGGTTTTGGAGTCAATGGCTGCACATGGTGTGAAGACTTTGATATATTCTAGTACGTGTGCAACATATGGGGAACCTGAGAAGATGCCTATTACTGAAGAAACTCCACAGGTCCCAATTAATCCGTATGGAAAAGCTAAGAAGATGGCAGAAGATATTATCTTGGATTTCTCTAAGAATTCAGACATGGCAGTCATGGTCCTCAGGTACTTCAATGTGATTGGGTCGGATCCAGAGGGCAGATTAGGCGAAGCCCCCAGACCTGAGCTTCGTGAGCATGGACGAATATCAGGTGCTTGTTTTGATGCAGCTCGCGGCATTATTCCTGGGCTAAAGGTTAGAGGTACAGATTATAAAACATCTGATGGCACTTGCATAAGGGACTATATAGATGTCACTGATTTGGTTGATGCTCATGTGAAAGCTCTCCAGCATGCACAGCCCCGTAAAGTGGGAATCTACAATGTTGGCACTGGAAAAGGTAGTTCAGTAAAGGAGTTCGTGGAGGCATGCAAGAAGGCAACTGGGGTGGACATCAAAGTTGATTTCCTTCCCCGTCGGCCTGGCGACTATGCTGAGGTCTATAGTGACCCATCTAAGATCCTGCGTGAACTCAACTGGACAGCTCAACACACCAATCTTCAAGAGAGTTTGCAGGTTGCGTGGAGATGGCAAAAGTCACACCGTGATGGGTACGGAACCCCTTTGGTGATGTATTCTTGA

Protein Analysis

448

Amino Acids

49.5

Weight (kDa)

8.35

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 975
AasI GACNNNNNNGTC 1 cut(s) 812
Acc36I ACCTGC 1 cut(s) 1267
AccII CGCG 1 cut(s) 936
AciI CCGC 2 cut(s) 22, 936
AclWI GGATC 5 cut(s) 161, 575, 845, 858, 1216
AcsI RAATTY 3 cut(s) 198, 507, 799
AcuI CTGAAG 2 cut(s) 446, 738
AdeI CACNNNGTG 2 cut(s) 650, 1307
AfaI GTAC 4 cut(s) 676, 830, 967, 1316
AfiI CCNNNNNNNGG 3 cut(s) 403, 452, 1072
AflII CTTAAG 1 cut(s) 587
AflIII ACRYGT 1 cut(s) 677
AgsI TTSAA 4 cut(s) 74, 262, 835, 1265
AjnI CCWGG 3 cut(s) 451, 946, 1183
AjuI GAANNNNNNNTTGG 2 cut(s) 426, 458
AluBI AGCT 7 cut(s) 118, 551, 758, 889, 932, 1046, 1247
AluI AGCT 7 cut(s) 118, 551, 758, 889, 932, 1046, 1247
AlwI GGATC 5 cut(s) 161, 575, 845, 858, 1216
AoxI GGCC 2 cut(s) 83, 1181
ApeKI GCWGC 5 cut(s) 209, 347, 548, 641, 929
ApoI RAATTY 3 cut(s) 198, 507, 799
ArsI GACNNNNNNTTYG 2 cut(s) 873, 905
AseI ATTAAT 1 cut(s) 741
Asp700I GAANNNNTTC 2 cut(s) 185, 441
AspA2I CCTAGG 1 cut(s) 412
AspS9I GGNCC 2 cut(s) 733, 820
AsuHPI GGTGA 1 cut(s) 1342
AvaII GGWCC 2 cut(s) 733, 820
AvrII CCTAGG 1 cut(s) 412
AxyI CCTNAGG 1 cut(s) 824
BamHI GGATCC 1 cut(s) 850
BauI CACGAG 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 662
BbvCI CCTCAGC 2 cut(s) 114, 1197
BbvI GCAGC 5 cut(s) 196, 334, 560, 628, 941
BccI CCATC 6 cut(s) 262, 760, 980, 1222, 1284, 1304
BciT130I CCWGG 3 cut(s) 453, 948, 1185
BfaI CTAG 3 cut(s) 311, 413, 672
BfmI CTRYAG 1 cut(s) 1204
BfrI CTTAAG 1 cut(s) 587
BfuAI ACCTGC 1 cut(s) 1267
BisI GCNGC 6 cut(s) 210, 348, 549, 642, 930, 937
BlnI CCTAGG 1 cut(s) 412
BlsI GCNGC 6 cut(s) 211, 349, 550, 643, 931, 938
Bme1390I CCNGG 3 cut(s) 453, 948, 1185
Bme18I GGWCC 2 cut(s) 733, 820
BmgT120I GGNCC 2 cut(s) 733, 820
BmiI GGNNCC 4 cut(s) 696, 735, 852, 1321
BmrFI CCNGG 3 cut(s) 453, 948, 1185
BmrI ACTGGG 1 cut(s) 1155
BmsI GCATC 6 cut(s) 478, 520, 528, 696, 916, 1021
BmuI ACTGGG 1 cut(s) 1155
BpiI GAAGAC 1 cut(s) 662
BpmI CTGGAG 1 cut(s) 1034
Bpu10I CCTNAGC 3 cut(s) 114, 885, 1197
BsaAI YACGTR 2 cut(s) 562, 678
BsaBI GATNNNNATC 1 cut(s) 372
BsaJI CCNNGG 4 cut(s) 80, 412, 618, 947
Bsc4I CCNNNNNNNGG 3 cut(s) 403, 452, 1072
Bse1I ACTGG 3 cut(s) 1099, 1150, 1244
Bse21I CCTNAGG 1 cut(s) 824
Bse3DI GCAATG 1 cut(s) 148
Bse8I GATNNNNATC 1 cut(s) 372
BseBI CCWGG 3 cut(s) 453, 948, 1185
BseDI CCNNGG 4 cut(s) 80, 412, 618, 947
BseGI GGATG 1 cut(s) 493
BseJI GATNNNNATC 1 cut(s) 372
BseLI CCNNNNNNNGG 3 cut(s) 403, 452, 1072
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 5 cut(s) 128, 690, 838, 876, 1188
BseNI ACTGG 3 cut(s) 1099, 1150, 1244
BseXI GCAGC 5 cut(s) 196, 334, 560, 628, 941
BsgI GTGCAG 1 cut(s) 627
Bsh1236I CGCG 1 cut(s) 936
BshFI GGCC 2 cut(s) 85, 1183
BslFI GGGAC 3 cut(s) 235, 719, 1016
BslI CCNNNNNNNGG 3 cut(s) 403, 452, 1072
BsmFI GGGAC 3 cut(s) 235, 719, 1016
BsnI GGCC 2 cut(s) 85, 1183
Bsp143I GATC 4 cut(s) 166, 580, 850, 1221
BspACI CCGC 2 cut(s) 22, 936
BspANI GGCC 2 cut(s) 85, 1183
BspCNI CTCAG 5 cut(s) 127, 691, 837, 877, 1189
BspFNI CGCG 1 cut(s) 936
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 4 cut(s) 696, 735, 852, 1321
BspMI ACCTGC 1 cut(s) 1267
BspPI GGATC 5 cut(s) 161, 575, 845, 858, 1216
BspTI CTTAAG 1 cut(s) 587
BsrDI GCAATG 1 cut(s) 148
BsrI ACTGG 3 cut(s) 1099, 1150, 1244
BssECI CCNNGG 4 cut(s) 80, 412, 618, 947
BssMI GATC 4 cut(s) 166, 580, 850, 1221
BssSI CACGAG 1 cut(s) 119
BssT1I CCWWGG 3 cut(s) 80, 412, 618
Bst2BI CACGAG 1 cut(s) 119
Bst2UI CCWGG 3 cut(s) 453, 948, 1185
Bst4CI ACNGT 2 cut(s) 249, 1307
Bst6I CTCTTC 1 cut(s) 134
BstAFI CTTAAG 1 cut(s) 587
BstAPI GCANNNNNTGC 1 cut(s) 554
BstBAI YACGTR 2 cut(s) 562, 678
BstC8I GCNNGC 3 cut(s) 934, 1056, 1132
BstDEI CTNAG 9 cut(s) 11, 114, 699, 759, 795, 824, 885, 1197, 1218
BstEII GGTNACC 1 cut(s) 298
BstF5I GGATG 1 cut(s) 493
BstFNI CGCG 1 cut(s) 936
BstKTI GATC 4 cut(s) 169, 583, 853, 1224
BstMBI GATC 4 cut(s) 166, 580, 850, 1221
BstMWI GCNNNNNNNGC 5 cut(s) 530, 554, 867, 895, 1060
BstNI CCWGG 3 cut(s) 453, 948, 1185
BstNSI RCATGY 4 cut(s) 277, 347, 1058, 1134
BstPI GGTNACC 1 cut(s) 298
BstSCI CCNGG 3 cut(s) 451, 946, 1183
BstSFI CTRYAG 1 cut(s) 1204
BstUI CGCG 1 cut(s) 936
BstV1I GCAGC 5 cut(s) 196, 334, 560, 628, 941
BstV2I GAAGAC 1 cut(s) 662
BstX2I RGATCY 3 cut(s) 166, 850, 1221
BstYI RGATCY 3 cut(s) 166, 850, 1221
Bsu36I CCTNAGG 1 cut(s) 824
BsuRI GGCC 2 cut(s) 85, 1183
BtsCI GGATG 1 cut(s) 493
BtsIMutI CAGTG 2 cut(s) 1017, 1092
BveI ACCTGC 1 cut(s) 1267
Cac8I GCNNGC 3 cut(s) 934, 1056, 1132
CciI TCATGA 1 cut(s) 286
Cfr13I GGNCC 2 cut(s) 733, 820
Csp6I GTAC 4 cut(s) 675, 829, 966, 1315
CspCI CAANNNNNGTGG 2 cut(s) 1131, 1166
CviQI GTAC 4 cut(s) 675, 829, 966, 1315
DdeI CTNAG 9 cut(s) 11, 114, 699, 759, 795, 824, 885, 1197, 1218
DpnI GATC 4 cut(s) 168, 582, 852, 1223
DpnII GATC 4 cut(s) 166, 580, 850, 1221
DraIII CACNNNGTG 2 cut(s) 650, 1307
DrdI GACNNNNNNGTC 1 cut(s) 812
DseDI GACNNNNNNGTC 1 cut(s) 812
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
EciI GGCGGA 1 cut(s) 11
Eco130I CCWWGG 3 cut(s) 80, 412, 618
Eco47I GGWCC 2 cut(s) 733, 820
Eco57I CTGAAG 2 cut(s) 446, 738
Eco81I CCTNAGG 1 cut(s) 824
Eco91I GGTNACC 1 cut(s) 298
EcoO109I RGGNCCY 1 cut(s) 733
EcoO65I GGTNACC 1 cut(s) 298
EcoRI GAATTC 1 cut(s) 799
EcoRII CCWGG 3 cut(s) 451, 946, 1183
EcoT14I CCWWGG 3 cut(s) 80, 412, 618
EcoT22I ATGCAT 2 cut(s) 233, 543
ErhI CCWWGG 3 cut(s) 80, 412, 618
FaqI GGGAC 3 cut(s) 235, 719, 1016
FauNDI CATATG 1 cut(s) 688
Fnu4HI GCNGC 6 cut(s) 210, 348, 549, 642, 930, 937
FokI GGATG 1 cut(s) 500
Fsp4HI GCNGC 6 cut(s) 210, 348, 549, 642, 930, 937
FspBI CTAG 3 cut(s) 311, 413, 672
GluI GCNGC 6 cut(s) 210, 348, 549, 642, 930, 937
GsuI CTGGAG 1 cut(s) 1034
HaeIII GGCC 2 cut(s) 85, 1183
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HinfI GANTC 4 cut(s) 290, 368, 632, 1077
HpaI GTTAAC 1 cut(s) 502
HphI GGTGA 1 cut(s) 1342
Hpy166II GTNNAC 4 cut(s) 341, 502, 1153, 1232
Hpy188I TCNGA 4 cut(s) 517, 805, 850, 985
Hpy188III TCNNGA 8 cut(s) 121, 164, 287, 446, 854, 893, 1265, 1341
Hpy8I GTNNAC 4 cut(s) 341, 502, 1153, 1232
Hpy99I CGWCG 2 cut(s) 613, 1182
HpyAV CCTTC 4 cut(s) 293, 450, 1132, 1181
HpyCH4III ACNGT 2 cut(s) 249, 1307
HpyCH4IV ACGT 3 cut(s) 561, 608, 677
HpyF10VI GCNNNNNNNGC 5 cut(s) 530, 554, 867, 895, 1060
HpyF3I CTNAG 9 cut(s) 11, 114, 699, 759, 795, 824, 885, 1197, 1218
HpySE526I ACGT 3 cut(s) 561, 608, 677
KspAI GTTAAC 1 cut(s) 502
Kzo9I GATC 4 cut(s) 166, 580, 850, 1221
Lsp1109I GCAGC 5 cut(s) 196, 334, 560, 628, 941
LweI GCATC 6 cut(s) 478, 520, 528, 696, 916, 1021
MaeI CTAG 3 cut(s) 311, 413, 672
MaeII ACGT 3 cut(s) 561, 608, 677
MaeIII GTNAC 7 cut(s) 121, 298, 313, 379, 1015, 1208, 1299
MalI GATC 4 cut(s) 168, 582, 852, 1223
MboI GATC 4 cut(s) 166, 580, 850, 1221
MboII GAAGA 9 cut(s) 121, 190, 194, 667, 715, 731, 775, 785, 1253
MflI RGATCY 3 cut(s) 166, 850, 1221
MluCI AATT 6 cut(s) 32, 184, 198, 507, 738, 799
MlyI GAGTC 1 cut(s) 641
MmeI TCCRAC 1 cut(s) 828
Mph1103I ATGCAT 2 cut(s) 233, 543
MroXI GAANNNNTTC 2 cut(s) 185, 441
MseI TTAA 3 cut(s) 501, 588, 741
MslI CAYNNNNRTG 2 cut(s) 236, 1308
MspA1I CMGCKG 1 cut(s) 551
MspCI CTTAAG 1 cut(s) 587
MspR9I CCNGG 3 cut(s) 453, 948, 1185
MvaI CCWGG 3 cut(s) 453, 948, 1185
MvnI CGCG 1 cut(s) 936
MwoI GCNNNNNNNGC 5 cut(s) 530, 554, 867, 895, 1060
NdeI CATATG 1 cut(s) 688
NdeII GATC 4 cut(s) 166, 580, 850, 1221
NlaIV GGNNCC 4 cut(s) 696, 735, 852, 1321
NmuCI GTSAC 4 cut(s) 121, 1015, 1208, 1299
NsiI ATGCAT 2 cut(s) 233, 543
NspI RCATGY 4 cut(s) 277, 347, 1058, 1134
PaeI GCATGC 2 cut(s) 1058, 1134
PagI TCATGA 1 cut(s) 286
PdmI GAANNNNTTC 2 cut(s) 185, 441
PfeI GAWTC 3 cut(s) 290, 368, 1077
PkrI GCNGC 6 cut(s) 211, 349, 550, 643, 931, 938
PleI GAGTC 1 cut(s) 640
PpsI GAGTC 1 cut(s) 640
Ppu21I YACGTR 2 cut(s) 562, 678
PpuMI RGGWCCY 1 cut(s) 733
PshBI ATTAAT 1 cut(s) 741
PsiI TTATAA 1 cut(s) 975
Psp5II RGGWCCY 1 cut(s) 733
Psp6I CCWGG 3 cut(s) 451, 946, 1183
PspEI GGTNACC 1 cut(s) 298
PspGI CCWGG 3 cut(s) 451, 946, 1183
PspN4I GGNNCC 4 cut(s) 696, 735, 852, 1321
PspPI GGNCC 2 cut(s) 733, 820
PspPPI RGGWCCY 1 cut(s) 733
PsuI RGATCY 3 cut(s) 166, 850, 1221
PvuII CAGCTG 1 cut(s) 551
RsaI GTAC 4 cut(s) 676, 830, 967, 1316
RsaNI GTAC 4 cut(s) 675, 829, 966, 1315
RseI CAYNNNNRTG 2 cut(s) 236, 1308
SaqAI TTAA 3 cut(s) 501, 588, 741
SatI GCNGC 6 cut(s) 210, 348, 549, 642, 930, 937
Sau3AI GATC 4 cut(s) 166, 580, 850, 1221
Sau96I GGNCC 2 cut(s) 733, 820
SchI GAGTC 1 cut(s) 641
ScrFI CCNGG 3 cut(s) 453, 948, 1185
SfaNI GCATC 6 cut(s) 478, 520, 528, 696, 916, 1021
SfcI CTRYAG 1 cut(s) 1204
SinI GGWCC 2 cut(s) 733, 820
SmiMI CAYNNNNRTG 2 cut(s) 236, 1308
SmlI CTYRAG 1 cut(s) 587
SmoI CTYRAG 1 cut(s) 587
SphI GCATGC 2 cut(s) 1058, 1134
Sse9I AATT 6 cut(s) 32, 184, 198, 507, 738, 799
SsiI CCGC 2 cut(s) 22, 936
SspI AATATT 1 cut(s) 604
SspMI CTAG 3 cut(s) 311, 413, 672
StyD4I CCNGG 3 cut(s) 451, 946, 1183
StyI CCWWGG 3 cut(s) 80, 412, 618
TaaI ACNGT 2 cut(s) 249, 1307
TaiI ACGT 3 cut(s) 564, 611, 680
TaqI TCGA 2 cut(s) 355, 611
TasI AATT 6 cut(s) 32, 184, 198, 507, 738, 799
TauI GCSGC 1 cut(s) 939
TfiI GAWTC 3 cut(s) 290, 368, 1077
Tru1I TTAA 3 cut(s) 501, 588, 741
Tru9I TTAA 3 cut(s) 501, 588, 741
TscAI CASTG 2 cut(s) 1024, 1099
TseFI GTSAC 4 cut(s) 121, 1015, 1208, 1299
TseI GCWGC 5 cut(s) 209, 347, 548, 641, 929
Tsp45I GTSAC 4 cut(s) 121, 1015, 1208, 1299
TspDTI ATGAA 4 cut(s) 17, 275, 303, 360
TspGWI ACGGA 3 cut(s) 487, 735, 1332
TspRI CASTG 2 cut(s) 1024, 1099
Vha464I CTTAAG 1 cut(s) 587
VpaK11BI GGWCC 2 cut(s) 733, 820
VspI ATTAAT 1 cut(s) 741
XapI RAATTY 3 cut(s) 198, 507, 799
XceI RCATGY 4 cut(s) 277, 347, 1058, 1134
XmaJI CCTAGG 1 cut(s) 412
XmnI GAANNNNTTC 2 cut(s) 185, 441
XspI CTAG 3 cut(s) 311, 413, 672
Zsp2I ATGCAT 2 cut(s) 233, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.