Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003112

Physical Location & Seq

Genomic Coordinates Forward (+)

3575151 .. 3577064

Gene Structure 1914 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0041500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCAGTTTGTTGGGTTCTTGGACTGGGGACTCTATTTGCATGGAACAGTATGGTGACTGTAGCAGATTACTATTATATTGTATTTCCGGAATACCATCCTTCACGGGTACTTACCTGTCTTTATCTACCATTTGCACTTGCAGCATTGGCAATATTTTTATACAATGAGGCAGAAGTTGATACAAGAAGGAGGATCTTAGTTGGTTACACTCTCTTCTTCCTTGGTACCTTTATTCTAATAATCGTAGATTTAGCTACATCTGGGACTGGAGGGATTGGATATTTTATTAGTATATGCACAATTGTTGGTGCATTTGGGGTTGCAAGTGCCCATGTTGAAGGTGGAGTTGTGGGTGAGCTATCTTTTATGTGCCCTGAATTCATCCAGTCCTTCTTTGCTGGCTTGGGTGCAGCAGGTGCTTTGACTTCTGCCTTAAGGTTGGTGACAAAAGCTGCCTTTAAGAACTACGACAATGGTCTTCGCAAGGGAGCTATGTTGTTCTTGGGAATTTCCACATTCATTGAGCTTTTGTGTGTTCTATCATATGCAATTTACTTCCCGAGATTGCCTATAGTAAAGTATTACTGCTCAAAGGCAGCCTCAGAAGGTTCTAAAACTGTATCAGCTGATCTTGCCGCTGCTGGCATTCAAAAACAAGCATCAGATACAGAAGTCCAAAATGATGCTAACCTTCCACATAGATTGAGCAATAAACAATTATTGGTACAAAATATCGATTATGCTCTTGACTTGTTCCTCATATATGTACTGCCATTGTCAATCTTCCCTGGTTTCATATTCGAAAATACTGGAGTGCACCAGTTAGGCTCATGGGACCTGAACAAAATGCCTTGGGAAACATTCTTGTGCTGTGTCTTTTGTGTGGCACATTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009856 GO:0009987 GO:0010154 GO:0012505 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019322 GO:0019566 GO:0019567 GO:0022414 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044238 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046364 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050373 GO:0051704 GO:0061458 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

299

Amino Acids

32.75

Weight (kDa)

5.71

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoside_tran	PF01733	107 - 266	4.6e-12	Nucleoside transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20460 AT5G44480 AT5G44480 AT5G44480 AT5G44480
fragaria_vesca	FvH4_3g11380 FvH4_3g11380 FvH4_3g11380 FvH4_3g11380 FvH4_3g11380 FvH4_3g11380
malus_domestica	MD05G1263800.v1.1 MD10G1241500.v1.1
prunus_persica	Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1
pyrus_communis	pycom05g24780 pycom10g20250
rosa_chinensis	RchiOBHm_Chr5g0018331
rosa_laevigata	RLG00000032352
rosa_multiflora	Rmu_sc0011919.1_g000008
rosa_roxburghii	Rroxscaffold_1G00059410
rosa_rugosa	Rorug05G0041300 Rorug05G0041300 Rorug05G0041400 Rorug05G0041500
rosa_samantha	Rh5AG134800 Rh5BG133400 Rh5CG145200 Rh5DG134800
rosa_wichuraiana	Rw5G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	407
Acc65I	GGTACC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	227
AccIII	TCCGGA	1 cut(s)	88
AciI	CCGC	1 cut(s)	639
AclWI	GGATC	1 cut(s)	203
AcsI	RAATTY	2 cut(s)	380, 510
AfaI	GTAC	4 cut(s)	111, 229, 729, 771
AflII	CTTAAG	1 cut(s)	436
AgsI	TTSAA	2 cut(s)	341, 653
AjnI	CCWGG	1 cut(s)	790
AluBI	AGCT	6 cut(s)	257, 361, 455, 494, 529, 629
AluI	AGCT	6 cut(s)	257, 361, 455, 494, 529, 629
Alw21I	GWGCWC	1 cut(s)	822
Alw44I	GTGCAC	1 cut(s)	818
AlwI	GGATC	1 cut(s)	203
Ama87I	CYCGRG	1 cut(s)	562
Aor13HI	TCCGGA	1 cut(s)	88
ApaLI	GTGCAC	1 cut(s)	818
ApeKI	GCWGC	5 cut(s)	143, 413, 455, 599, 641
ApoI	RAATTY	2 cut(s)	380, 510
Asp718I	GGTACC	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	838
AsuHPI	GGTGA	3 cut(s)	67, 368, 457
AsuII	TTCGAA	1 cut(s)	804
AvaI	CYCGRG	1 cut(s)	562
AvaII	GGWCC	1 cut(s)	838
BaeGI	GKGCMC	3 cut(s)	334, 377, 822
BaeI	ACNNNNGTAYC	2 cut(s)	660, 693
BanI	GGYRCC	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	473
Bbv12I	GWGCWC	1 cut(s)	822
BbvI	GCAGC	5 cut(s)	155, 425, 442, 611, 628
BccI	CCATC	1 cut(s)	105
BciT130I	CCWGG	1 cut(s)	792
BfmI	CTRYAG	2 cut(s)	60, 573
BfrI	CTTAAG	1 cut(s)	436
BfuAI	ACCTGC	1 cut(s)	407
BisI	GCNGC	6 cut(s)	144, 414, 456, 600, 639, 642
BlsI	GCNGC	6 cut(s)	145, 415, 457, 601, 640, 643
Bme1390I	CCNGG	1 cut(s)	792
Bme18I	GGWCC	1 cut(s)	838
BmeT110I	CYCGRG	1 cut(s)	562
BmgT120I	GGNCC	1 cut(s)	838
BmiI	GGNNCC	2 cut(s)	229, 839
BmrFI	CCNGG	1 cut(s)	792
BmrI	ACTGGG	1 cut(s)	35
BmsI	GCATC	2 cut(s)	671, 676
BmuI	ACTGGG	1 cut(s)	35
BoxI	GACNNNNGTC	1 cut(s)	477
BpiI	GAAGAC	1 cut(s)	473
BpmI	CTGGAG	2 cut(s)	291, 834
Bpu14I	TTCGAA	1 cut(s)	804
Bsa29I	ATCGAT	1 cut(s)	738
BsaJI	CCNNGG	3 cut(s)	223, 790, 854
BsaWI	WCCGGW	1 cut(s)	88
Bse1I	ACTGG	5 cut(s)	30, 274, 388, 817, 823
BseAI	TCCGGA	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	792
BseCI	ATCGAT	1 cut(s)	738
BseDI	CCNNGG	3 cut(s)	223, 790, 854
BseGI	GGATG	2 cut(s)	97, 384
BseMII	CTCAG	1 cut(s)	618
BseNI	ACTGG	5 cut(s)	30, 274, 388, 817, 823
BseSI	GKGCMC	3 cut(s)	334, 377, 822
BseXI	GCAGC	5 cut(s)	155, 425, 442, 611, 628
BsgI	GTGCAG	1 cut(s)	432
BshNI	GGYRCC	1 cut(s)	227
BshVI	ATCGAT	1 cut(s)	738
BsiHKAI	GWGCWC	1 cut(s)	822
BsiHKCI	CYCGRG	1 cut(s)	562
BsiSI	CCGG	1 cut(s)	89
BslFI	GGGAC	3 cut(s)	43, 280, 851
BsmFI	GGGAC	3 cut(s)	43, 280, 851
BsmI	GAATGC	1 cut(s)	648
BsoBI	CYCGRG	1 cut(s)	562
Bsp119I	TTCGAA	1 cut(s)	804
Bsp1286I	GDGCHC	3 cut(s)	334, 377, 822
Bsp13I	TCCGGA	1 cut(s)	88
Bsp143I	GATC	2 cut(s)	195, 631
BspACI	CCGC	1 cut(s)	639
BspCNI	CTCAG	1 cut(s)	617
BspDI	ATCGAT	1 cut(s)	738
BspEI	TCCGGA	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	229, 839
BspMI	ACCTGC	1 cut(s)	407
BspPI	GGATC	1 cut(s)	203
BspT104I	TTCGAA	1 cut(s)	804
BspT107I	GGYRCC	1 cut(s)	227
BspTI	CTTAAG	1 cut(s)	436
BsrI	ACTGG	5 cut(s)	30, 274, 388, 817, 823
BssECI	CCNNGG	3 cut(s)	223, 790, 854
BssMI	GATC	2 cut(s)	195, 631
BssT1I	CCWWGG	2 cut(s)	223, 854
Bst2UI	CCWGG	1 cut(s)	792
Bst4CI	ACNGT	3 cut(s)	50, 61, 622
Bst6I	CTCTTC	1 cut(s)	221
BstAFI	CTTAAG	1 cut(s)	436
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstBI	TTCGAA	1 cut(s)	804
BstC8I	GCNNGC	2 cut(s)	403, 646
BstDEI	CTNAG	2 cut(s)	199, 604
BstF5I	GGATG	2 cut(s)	97, 384
BstKTI	GATC	2 cut(s)	198, 634
BstMBI	GATC	2 cut(s)	195, 631
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 149, 419, 635
BstNI	CCWGG	1 cut(s)	792
BstPAI	GACNNNNGTC	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	790
BstSFI	CTRYAG	2 cut(s)	60, 573
BstSLI	GKGCMC	3 cut(s)	334, 377, 822
BstV1I	GCAGC	5 cut(s)	155, 425, 442, 611, 628
BstV2I	GAAGAC	1 cut(s)	473
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
Bsu15I	ATCGAT	1 cut(s)	738
BsuTUI	ATCGAT	1 cut(s)	738
BtsCI	GGATG	2 cut(s)	97, 384
BveI	ACCTGC	1 cut(s)	407
Cac8I	GCNNGC	2 cut(s)	403, 646
Cfr13I	GGNCC	1 cut(s)	838
ClaI	ATCGAT	1 cut(s)	738
Csp6I	GTAC	4 cut(s)	110, 228, 728, 770
CspCI	CAANNNNNGTGG	4 cut(s)	505, 540, 687, 722
CviAII	CATG	3 cut(s)	42, 335, 834
CviJI	RGCY	9 cut(s)	257, 361, 405, 455, 494, 529, 602, 629, 831
CviKI_1	RGCY	9 cut(s)	257, 361, 405, 455, 494, 529, 602, 629, 831
CviQI	GTAC	4 cut(s)	110, 228, 728, 770
DdeI	CTNAG	2 cut(s)	199, 604
DpnI	GATC	2 cut(s)	197, 633
DpnII	GATC	2 cut(s)	195, 631
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco130I	CCWWGG	2 cut(s)	223, 854
Eco47I	GGWCC	1 cut(s)	838
Eco88I	CYCGRG	1 cut(s)	562
EcoO109I	RGGNCCY	1 cut(s)	838
EcoRI	GAATTC	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	790
EcoT14I	CCWWGG	2 cut(s)	223, 854
ErhI	CCWWGG	2 cut(s)	223, 854
FaeI	CATG	3 cut(s)	45, 338, 837
FaqI	GGGAC	3 cut(s)	43, 280, 851
FatI	CATG	3 cut(s)	41, 334, 833
FauNDI	CATATG	1 cut(s)	547
Fnu4HI	GCNGC	6 cut(s)	144, 414, 456, 600, 639, 642
FokI	GGATG	2 cut(s)	84, 371
Fsp4HI	GCNGC	6 cut(s)	144, 414, 456, 600, 639, 642
GluI	GCNGC	6 cut(s)	144, 414, 456, 600, 639, 642
GsuI	CTGGAG	2 cut(s)	291, 834
HapII	CCGG	1 cut(s)	89
Hin1II	CATG	3 cut(s)	45, 338, 837
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	3 cut(s)	67, 368, 457
Hpy166II	GTNNAC	1 cut(s)	820
Hpy188I	TCNGA	2 cut(s)	607, 667
Hpy188III	TCNNGA	3 cut(s)	89, 562, 749
Hpy8I	GTNNAC	1 cut(s)	820
HpyAV	CCTTC	6 cut(s)	111, 183, 335, 403, 602, 704
HpyCH4III	ACNGT	3 cut(s)	50, 61, 622
HpyCH4V	TGCA	9 cut(s)	41, 137, 143, 300, 314, 326, 413, 551, 820
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 149, 419, 635
HpyF3I	CTNAG	2 cut(s)	199, 604
Hsp92II	CATG	3 cut(s)	45, 338, 837
Kpn2I	TCCGGA	1 cut(s)	88
KpnI	GGTACC	1 cut(s)	231
Kzo9I	GATC	2 cut(s)	195, 631
LmnI	GCTCC	1 cut(s)	491
Lsp1109I	GCAGC	5 cut(s)	155, 425, 442, 611, 628
LweI	GCATC	2 cut(s)	671, 676
MaeIII	GTNAC	3 cut(s)	55, 206, 445
MalI	GATC	2 cut(s)	197, 633
MboI	GATC	2 cut(s)	195, 631
MboII	GAAGA	4 cut(s)	208, 211, 473, 778
MfeI	CAATTG	1 cut(s)	303
MflI	RGATCY	1 cut(s)	195
MhlI	GDGCHC	3 cut(s)	334, 377, 822
MluCI	AATT	5 cut(s)	303, 380, 510, 552, 719
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	5 cut(s)	163, 186, 266, 613, 770
MroI	TCCGGA	1 cut(s)	88
MseI	TTAA	2 cut(s)	437, 462
MslI	CAYNNNNRTG	1 cut(s)	868
MspA1I	CMGCKG	2 cut(s)	629, 641
MspCI	CTTAAG	1 cut(s)	436
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	792
MunI	CAATTG	1 cut(s)	303
Mva1269I	GAATGC	1 cut(s)	648
MvaI	CCWGG	1 cut(s)	792
MwoI	GCNNNNNNNGC	4 cut(s)	143, 149, 419, 635
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	2 cut(s)	195, 631
NlaIII	CATG	3 cut(s)	45, 338, 837
NlaIV	GGNNCC	2 cut(s)	229, 839
NmuCI	GTSAC	2 cut(s)	55, 445
NspV	TTCGAA	1 cut(s)	804
PaqCI	CACCTGC	1 cut(s)	407
PctI	GAATGC	1 cut(s)	648
PkrI	GCNGC	6 cut(s)	145, 415, 457, 601, 640, 643
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PpuMI	RGGWCCY	1 cut(s)	838
PshAI	GACNNNNGTC	1 cut(s)	477
Psp5II	RGGWCCY	1 cut(s)	838
Psp6I	CCWGG	1 cut(s)	790
PspGI	CCWGG	1 cut(s)	790
PspN4I	GGNNCC	2 cut(s)	229, 839
PspPI	GGNCC	1 cut(s)	838
PspPPI	RGGWCCY	1 cut(s)	838
PsuI	RGATCY	1 cut(s)	195
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	4 cut(s)	111, 229, 729, 771
RsaNI	GTAC	4 cut(s)	110, 228, 728, 770
RseI	CAYNNNNRTG	1 cut(s)	868
SaqAI	TTAA	2 cut(s)	437, 462
SatI	GCNGC	6 cut(s)	144, 414, 456, 600, 639, 642
Sau3AI	GATC	2 cut(s)	195, 631
Sau96I	GGNCC	1 cut(s)	838
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	792
SduI	GDGCHC	3 cut(s)	334, 377, 822
SfaNI	GCATC	2 cut(s)	671, 676
SfcI	CTRYAG	2 cut(s)	60, 573
SfuI	TTCGAA	1 cut(s)	804
SinI	GGWCC	1 cut(s)	838
SmiMI	CAYNNNNRTG	1 cut(s)	868
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
Sse9I	AATT	5 cut(s)	303, 380, 510, 552, 719
SsiI	CCGC	1 cut(s)	639
SspI	AATATT	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	790
StyI	CCWWGG	2 cut(s)	223, 854
TaaI	ACNGT	3 cut(s)	50, 61, 622
TaqI	TCGA	2 cut(s)	738, 804
TasI	AATT	5 cut(s)	303, 380, 510, 552, 719
TatI	WGTACW	1 cut(s)	769
TauI	GCSGC	1 cut(s)	641
Tru1I	TTAA	2 cut(s)	437, 462
Tru9I	TTAA	2 cut(s)	437, 462
TseFI	GTSAC	2 cut(s)	55, 445
TseI	GCWGC	5 cut(s)	143, 413, 455, 599, 641
Tsp45I	GTSAC	2 cut(s)	55, 445
TspDTI	ATGAA	3 cut(s)	373, 511, 787
Vha464I	CTTAAG	1 cut(s)	436
VneI	GTGCAC	1 cut(s)	818
VpaK11BI	GGWCC	1 cut(s)	838
XapI	RAATTY	2 cut(s)	380, 510
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.