MD05G1263800.v1.1

UDP-arabinose 4-epimerase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
39907674 .. 39913252
5579 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1263800.v1.1.491

Sequence Viewer

Length: 1257 bp
ATGCTTAATTTTGGCAGGACCAGAAGTCAATCAAGGACCAACAGATCCATGTCTTTAGGAGGCATGGAGTACCCAGATCCCAAGAGGAAGAACAACTTTGTAGGAAAAATTCTTTTGGCTGCTACTCTTACAGCATTATGTATTATTATGCTGAAACAATCCCCATCCTTCAATACCACAAGCTCGTTCTCCATTCATGAAGCAGGGGTAACTCATGTCCTAGTAACTGGAGGTGCTGGATTTATTGGTTCACATGCTGCATTACGACTCCTAAGGGATCAATATCGTGTTACTATTGTGGATAACCTCTCACGGGGGAACATAGGTGCCATCAAGGTTCTCCAAGAGTTATTTCCTGAACCTGGGAGCCTTCAGTTTATTTATGCTGACTTGGGAGATCCAAAATCTGTCAACAAAATATTTTCAGAGAATGCATTTGATGCTGTGATGCATTTTGCAGCTGTTGCATATGTTGGGGAAAGCACACTTGATCCACTTAAGTATTACCACAACATTACATCAAATACCTTAGGGGTATTGGAGGCAATGGCTTCACATGGTGTGAAGACTTTGATATATTCTAGTACATGTGCAACATACGGAGAACCTGAGAAGATGCCTATTACTGAAGAAACTCTGCAGCTCCCAATTAATCCATATGGAAAAGCAAAGAAGATGGCAGAAGATATCATCTTGGATTTTCATAAGAATTCAGACATGGCAGTCATGATCCTGAGATACTTCAATGTGATTGGGTCGGACCCGGAGGGCAGATTAGGTGAAGCTCCCAGACCTGAACTTCGTGAACATGGACGAATATCAGGTGCTTGTTTTGATGCAGCTCGTGGTATCACGCCTGGGCTAAAGGTTCGAGGCACCGATTACAAAACATCTGATGGCACTTGCATAAGAGATTATATAGATGTCACTGATTTGGTTGATGCTCACGTTAAAGCTCTTGAGCATGCACAGCCCCGTAAAGTGGGAATCTACAATGTTGGAACTGGAAAAGGTAGTTCAGTAAAGGAGTTCGTGGAGGCATGTAAGAAGGCAACTGGTGTGGACATTAAGGTTGATTTCCTTCCCCGCCGGCCTGGTGACTATGCTGAAGTCTTCAGTGACCCATCTAAGATCCTCCGTGAACTGAACTGGAGCGCTCAACACACCAACCTTCAAGAGAGTTTGCAGGTTGCGTGGAGATGGCAAAAAGCACATCGTGATGGGTACGGAACCACCCCGTTGGTGCTGTCTTCTTGA

Protein Analysis

419

Amino Acids

45.99

Weight (kDa)

8.42

Isoelectric Point (pI)

39.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RmlD_sub_bind PF04321 72 - 252 4e-11 RmlD substrate binding domain
Epimerase PF01370 73 - 334 6.6e-52 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 73 - 253 2.1e-12 Polysaccharide biosynthesis protein
GDP_Man_Dehyd PF16363 74 - 388 1.8e-52 GDP-mannose 4,6 dehydratase
3Beta_HSD PF01073 74 - 235 1.6e-14 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10 PF13460 77 - 250 1.4e-07 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 722
Acc36I ACCTGC 1 cut(s) 1177
AccB1I GGYRCC 2 cut(s) 326, 875
AciI CCGC 1 cut(s) 1087
AclWI GGATC 7 cut(s) 39, 71, 285, 392, 485, 724, 1126
AcsI RAATTY 2 cut(s) 108, 709
AcuI CTGAAG 4 cut(s) 356, 648, 1099, 1128
AdeI CACNNNGTG 2 cut(s) 560, 1217
AfaI GTAC 3 cut(s) 71, 586, 1226
AfeI AGCGCT 1 cut(s) 1156
AfiI CCNNNNNNNGG 3 cut(s) 313, 362, 982
AflII CTTAAG 1 cut(s) 497
AflIII ACRYGT 1 cut(s) 587
AgsI TTSAA 3 cut(s) 172, 745, 1175
AhdI GACNNNNNGTC 1 cut(s) 24
AjnI CCWGG 3 cut(s) 361, 856, 1093
AjuI GAANNNNNNNTTGG 2 cut(s) 336, 368
AluBI AGCT 6 cut(s) 183, 461, 643, 785, 842, 956
AluI AGCT 6 cut(s) 183, 461, 643, 785, 842, 956
AlwI GGATC 7 cut(s) 39, 71, 285, 392, 485, 724, 1126
Aor51HI AGCGCT 1 cut(s) 1156
AoxI GGCC 1 cut(s) 1091
ApeKI GCWGC 5 cut(s) 119, 257, 458, 640, 839
ApoI RAATTY 2 cut(s) 108, 709
ArsI GACNNNNNNTTYG 2 cut(s) 783, 815
AseI ATTAAT 1 cut(s) 651
AspLEI GCGC 1 cut(s) 1157
AspS9I GGNCC 3 cut(s) 18, 36, 760
AsuC2I CCSGG 1 cut(s) 764
AsuHPI GGTGA 2 cut(s) 791, 1109
AvaII GGWCC 3 cut(s) 18, 36, 760
AxyI CCTNAGG 2 cut(s) 272, 529
BanI GGYRCC 2 cut(s) 326, 875
BauI CACGAG 1 cut(s) 843
BbsI GAAGAC 3 cut(s) 572, 1105, 1242
BbvI GCAGC 5 cut(s) 106, 244, 470, 652, 851
BccI CCATC 7 cut(s) 172, 338, 670, 890, 1132, 1194, 1214
BciT130I CCWGG 3 cut(s) 363, 858, 1095
BcnI CCSGG 1 cut(s) 764
BfaI CTAG 2 cut(s) 221, 582
BfmI CTRYAG 1 cut(s) 638
BfoI RGCGCY 1 cut(s) 1158
BfrI CTTAAG 1 cut(s) 497
BfuAI ACCTGC 1 cut(s) 1177
BisI GCNGC 5 cut(s) 120, 258, 459, 641, 840
BlsI GCNGC 5 cut(s) 121, 259, 460, 642, 841
Bme1390I CCNGG 4 cut(s) 363, 764, 858, 1095
Bme18I GGWCC 3 cut(s) 18, 36, 760
BmeRI GACNNNNNGTC 1 cut(s) 24
BmgT120I GGNCC 3 cut(s) 18, 36, 760
BmiI GGNNCC 5 cut(s) 328, 368, 762, 877, 1231
BmrFI CCNGG 4 cut(s) 363, 764, 858, 1095
BmsI GCATC 5 cut(s) 430, 438, 606, 826, 931
BpiI GAAGAC 3 cut(s) 572, 1105, 1242
BpmI CTGGAG 2 cut(s) 249, 1171
BpuEI CTTGAG 1 cut(s) 980
BpuMI CCSGG 1 cut(s) 764
BsaBI GATNNNNATC 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 362, 857
Bsc4I CCNNNNNNNGG 3 cut(s) 313, 362, 982
Bse118I RCCGGY 1 cut(s) 1089
Bse1I ACTGG 4 cut(s) 232, 1009, 1060, 1154
Bse21I CCTNAGG 2 cut(s) 272, 529
Bse3DI GCAATG 1 cut(s) 552
Bse8I GATNNNNATC 1 cut(s) 282
BseBI CCWGG 3 cut(s) 363, 858, 1095
BseDI CCNNGG 2 cut(s) 362, 857
BseGI GGATG 1 cut(s) 164
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 3 cut(s) 313, 362, 982
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 2 cut(s) 600, 725
BseNI ACTGG 4 cut(s) 232, 1009, 1060, 1154
BseXI GCAGC 5 cut(s) 106, 244, 470, 652, 851
BshFI GGCC 1 cut(s) 1093
BshNI GGYRCC 2 cut(s) 326, 875
BsiSI CCGG 2 cut(s) 764, 1090
BslI CCNNNNNNNGG 3 cut(s) 313, 362, 982
BsmI GAATGC 1 cut(s) 436
BsnI GGCC 1 cut(s) 1093
Bsp143I GATC 7 cut(s) 44, 76, 277, 397, 490, 729, 1131
BspACI CCGC 1 cut(s) 1087
BspANI GGCC 1 cut(s) 1093
BspCNI CTCAG 2 cut(s) 601, 726
BspHI TCATGA 2 cut(s) 196, 726
BspLI GGNNCC 5 cut(s) 328, 368, 762, 877, 1231
BspMAI CTGCAG 1 cut(s) 642
BspMI ACCTGC 1 cut(s) 1177
BspPI GGATC 7 cut(s) 39, 71, 285, 392, 485, 724, 1126
BspT107I GGYRCC 2 cut(s) 326, 875
BspTI CTTAAG 1 cut(s) 497
BsrDI GCAATG 1 cut(s) 552
BsrFI RCCGGY 1 cut(s) 1089
BsrI ACTGG 4 cut(s) 232, 1009, 1060, 1154
BssAI RCCGGY 1 cut(s) 1089
BssECI CCNNGG 2 cut(s) 362, 857
BssMI GATC 7 cut(s) 44, 76, 277, 397, 490, 729, 1131
BssSI CACGAG 1 cut(s) 843
Bst2BI CACGAG 1 cut(s) 843
Bst2UI CCWGG 3 cut(s) 363, 858, 1095
BstAFI CTTAAG 1 cut(s) 497
BstAPI GCANNNNNTGC 2 cut(s) 440, 464
BstC8I GCNNGC 2 cut(s) 966, 1091
BstDEI CTNAG 5 cut(s) 272, 529, 609, 734, 1128
BstF5I GGATG 1 cut(s) 164
BstH2I RGCGCY 1 cut(s) 1158
BstHHI GCGC 1 cut(s) 1157
BstKTI GATC 7 cut(s) 47, 79, 280, 400, 493, 732, 1134
BstMBI GATC 7 cut(s) 44, 76, 277, 397, 490, 729, 1131
BstMWI GCNNNNNNNGC 3 cut(s) 440, 464, 970
BstNI CCWGG 3 cut(s) 363, 858, 1095
BstNSI RCATGY 4 cut(s) 257, 591, 968, 1044
BstSCI CCNGG 4 cut(s) 361, 762, 856, 1093
BstSFI CTRYAG 1 cut(s) 638
BstV1I GCAGC 5 cut(s) 106, 244, 470, 652, 851
BstV2I GAAGAC 3 cut(s) 572, 1105, 1242
BstX2I RGATCY 4 cut(s) 44, 76, 397, 1131
BstXI CCANNNNNNTGG 1 cut(s) 1240
BstYI RGATCY 4 cut(s) 44, 76, 397, 1131
Bsu36I CCTNAGG 2 cut(s) 272, 529
BsuRI GGCC 1 cut(s) 1093
BtsCI GGATG 1 cut(s) 164
BtsIMutI CAGTG 2 cut(s) 927, 1123
BveI ACCTGC 1 cut(s) 1177
Cac8I GCNNGC 2 cut(s) 966, 1091
CciI TCATGA 2 cut(s) 196, 726
CfoI GCGC 1 cut(s) 1157
Cfr10I RCCGGY 1 cut(s) 1089
Cfr13I GGNCC 3 cut(s) 18, 36, 760
Csp6I GTAC 3 cut(s) 70, 585, 1225
CspCI CAANNNNNGTGG 2 cut(s) 1041, 1076
CviQI GTAC 3 cut(s) 70, 585, 1225
DdeI CTNAG 5 cut(s) 272, 529, 609, 734, 1128
DpnI GATC 7 cut(s) 46, 78, 279, 399, 492, 731, 1133
DpnII GATC 7 cut(s) 44, 76, 277, 397, 490, 729, 1131
DraIII CACNNNGTG 2 cut(s) 560, 1217
DrdI GACNNNNNNGTC 1 cut(s) 722
DriI GACNNNNNGTC 1 cut(s) 24
DseDI GACNNNNNNGTC 1 cut(s) 722
Eam1105I GACNNNNNGTC 1 cut(s) 24
Eco32I GATATC 1 cut(s) 688
Eco47I GGWCC 3 cut(s) 18, 36, 760
Eco47III AGCGCT 1 cut(s) 1156
Eco57I CTGAAG 4 cut(s) 356, 648, 1099, 1128
Eco81I CCTNAGG 2 cut(s) 272, 529
EcoRI GAATTC 1 cut(s) 709
EcoRII CCWGG 3 cut(s) 361, 856, 1093
EcoRV GATATC 1 cut(s) 688
EcoT22I ATGCAT 2 cut(s) 436, 453
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FauI CCCGC 1 cut(s) 1094
FauNDI CATATG 2 cut(s) 469, 658
Fnu4HI GCNGC 5 cut(s) 120, 258, 459, 641, 840
FokI GGATG 1 cut(s) 151
Fsp4HI GCNGC 5 cut(s) 120, 258, 459, 641, 840
FspBI CTAG 2 cut(s) 221, 582
GlaI GCGC 1 cut(s) 1156
GluI GCNGC 5 cut(s) 120, 258, 459, 641, 840
GsuI CTGGAG 2 cut(s) 249, 1171
HaeII RGCGCY 1 cut(s) 1158
HaeIII GGCC 1 cut(s) 1093
HapII CCGG 2 cut(s) 764, 1090
HhaI GCGC 1 cut(s) 1157
Hin6I GCGC 1 cut(s) 1155
HinP1I GCGC 1 cut(s) 1155
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 2 cut(s) 267, 987
HpaII CCGG 2 cut(s) 764, 1090
HphI GGTGA 2 cut(s) 791, 1109
Hpy166II GTNNAC 5 cut(s) 251, 412, 806, 1063, 1142
Hpy188I TCNGA 4 cut(s) 427, 715, 760, 895
Hpy188III TCNNGA 9 cut(s) 197, 356, 727, 733, 803, 959, 1175, 1217, 1254
Hpy8I GTNNAC 5 cut(s) 251, 412, 806, 1063, 1142
HpyAV CCTTC 5 cut(s) 178, 380, 1042, 1091, 1181
HpyCH4IV ACGT 1 cut(s) 948
HpyF10VI GCNNNNNNNGC 3 cut(s) 440, 464, 970
HpyF3I CTNAG 5 cut(s) 272, 529, 609, 734, 1128
HpySE526I ACGT 1 cut(s) 948
HspAI GCGC 1 cut(s) 1155
KroI GCCGGC 1 cut(s) 1089
KroNI GCCGGC 1 cut(s) 1091
Kzo9I GATC 7 cut(s) 44, 76, 277, 397, 490, 729, 1131
LmnI GCTCC 4 cut(s) 366, 648, 790, 1152
Lsp1109I GCAGC 5 cut(s) 106, 244, 470, 652, 851
LweI GCATC 5 cut(s) 430, 438, 606, 826, 931
MaeI CTAG 2 cut(s) 221, 582
MaeII ACGT 1 cut(s) 948
MaeIII GTNAC 6 cut(s) 208, 223, 289, 925, 1097, 1118
MalI GATC 7 cut(s) 46, 78, 279, 399, 492, 731, 1133
MboI GATC 7 cut(s) 44, 76, 277, 397, 490, 729, 1131
MboII GAAGA 8 cut(s) 100, 577, 625, 641, 685, 695, 1105, 1242
MflI RGATCY 4 cut(s) 44, 76, 397, 1131
MluCI AATT 4 cut(s) 7, 108, 648, 709
MlyI GAGTC 1 cut(s) 261
MmeI TCCRAC 2 cut(s) 738, 979
MnlI CCTC 9 cut(s) 53, 78, 224, 317, 535, 760, 866, 1030, 1145
Mph1103I ATGCAT 2 cut(s) 436, 453
MroNI GCCGGC 1 cut(s) 1089
MseI TTAA 5 cut(s) 6, 498, 651, 951, 1068
MslI CAYNNNNRTG 1 cut(s) 1218
MspA1I CMGCKG 1 cut(s) 461
MspCI CTTAAG 1 cut(s) 497
MspI CCGG 2 cut(s) 764, 1090
MspR9I CCNGG 4 cut(s) 363, 764, 858, 1095
Mva1269I GAATGC 1 cut(s) 436
MvaI CCWGG 3 cut(s) 363, 858, 1095
MwoI GCNNNNNNNGC 3 cut(s) 440, 464, 970
NaeI GCCGGC 1 cut(s) 1091
NciI CCSGG 1 cut(s) 764
NdeI CATATG 2 cut(s) 469, 658
NdeII GATC 7 cut(s) 44, 76, 277, 397, 490, 729, 1131
NgoMIV GCCGGC 1 cut(s) 1089
NlaIV GGNNCC 5 cut(s) 328, 368, 762, 877, 1231
NmuCI GTSAC 3 cut(s) 925, 1097, 1118
NsiI ATGCAT 2 cut(s) 436, 453
NspI RCATGY 4 cut(s) 257, 591, 968, 1044
PaeI GCATGC 1 cut(s) 968
PagI TCATGA 2 cut(s) 196, 726
PciI ACATGT 1 cut(s) 587
PctI GAATGC 1 cut(s) 436
PdiI GCCGGC 1 cut(s) 1091
PfeI GAWTC 1 cut(s) 987
PkrI GCNGC 5 cut(s) 121, 259, 460, 642, 841
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
PscI ACATGT 1 cut(s) 587
PshBI ATTAAT 1 cut(s) 651
Psp6I CCWGG 3 cut(s) 361, 856, 1093
PspGI CCWGG 3 cut(s) 361, 856, 1093
PspN4I GGNNCC 5 cut(s) 328, 368, 762, 877, 1231
PspPI GGNCC 3 cut(s) 18, 36, 760
PstI CTGCAG 1 cut(s) 642
PsuI RGATCY 4 cut(s) 44, 76, 397, 1131
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 3 cut(s) 71, 586, 1226
RsaNI GTAC 3 cut(s) 70, 585, 1225
RseI CAYNNNNRTG 1 cut(s) 1218
SaqAI TTAA 5 cut(s) 6, 498, 651, 951, 1068
SatI GCNGC 5 cut(s) 120, 258, 459, 641, 840
Sau3AI GATC 7 cut(s) 44, 76, 277, 397, 490, 729, 1131
Sau96I GGNCC 3 cut(s) 18, 36, 760
SchI GAGTC 1 cut(s) 261
ScrFI CCNGG 4 cut(s) 363, 764, 858, 1095
SfaNI GCATC 5 cut(s) 430, 438, 606, 826, 931
SfcI CTRYAG 1 cut(s) 638
SinI GGWCC 3 cut(s) 18, 36, 760
SmiMI CAYNNNNRTG 1 cut(s) 1218
SmlI CTYRAG 2 cut(s) 497, 959
SmoI CTYRAG 2 cut(s) 497, 959
SphI GCATGC 1 cut(s) 968
Sse9I AATT 4 cut(s) 7, 108, 648, 709
SsiI CCGC 1 cut(s) 1087
SspI AATATT 1 cut(s) 420
SspMI CTAG 2 cut(s) 221, 582
StyD4I CCNGG 4 cut(s) 361, 762, 856, 1093
TaiI ACGT 1 cut(s) 951
TaqI TCGA 1 cut(s) 871
TasI AATT 4 cut(s) 7, 108, 648, 709
TatI WGTACW 1 cut(s) 584
TfiI GAWTC 1 cut(s) 987
Tru1I TTAA 5 cut(s) 6, 498, 651, 951, 1068
Tru9I TTAA 5 cut(s) 6, 498, 651, 951, 1068
TscAI CASTG 2 cut(s) 934, 1123
TseFI GTSAC 3 cut(s) 925, 1097, 1118
TseI GCWGC 5 cut(s) 119, 257, 458, 640, 839
Tsp45I GTSAC 3 cut(s) 925, 1097, 1118
TspDTI ATGAA 3 cut(s) 185, 213, 692
TspGWI ACGGA 3 cut(s) 615, 1127, 1242
TspRI CASTG 2 cut(s) 934, 1123
Vha464I CTTAAG 1 cut(s) 497
VpaK11BI GGWCC 3 cut(s) 18, 36, 760
VspI ATTAAT 1 cut(s) 651
XapI RAATTY 2 cut(s) 108, 709
XceI RCATGY 4 cut(s) 257, 591, 968, 1044
XspI CTAG 2 cut(s) 221, 582
Zsp2I ATGCAT 2 cut(s) 436, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.