Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003112

Physical Location & Seq

Genomic Coordinates Forward (+)

3570558 .. 3572671

Gene Structure 2114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0041400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGCAGGGAGTAGCCATGGTTGATGCTCCACTTCAGGGACAGTATAAAGCTATGGCAGTTTGTTGGGTTCTTGGACTAGGGACTCTATTTGCGTGGAACAGTATGGTGACTATAGAAGATTACTATTATGTTCTATTTCCGGAATACCATCCTTCGCGGGTTCTTACCTGTCTTTATCAACCATTTGCACTTGCAATATTGGCAATATTTTCATACAATGAGGCAGAAGTTGATACAAGAAGGAGGATCTTAGTAGATTTAGCTACATCTGGGACTGGAGGGATTGGATATTTTATTAGTATATGCACAATTGTTGGTGCGTTTGGGGTTGCAAGTGCCCATGTTGAAGGTGGAGTTGTGGGTGAGCTATCTTTTATGTGCCCTGAATTCATCCAGTCCTTCTTTGCTGGCTTGGGTGCAGCAGGTGCTTTGACTTCTGCCTTAAGGTTGGTGACAAAAGCTGCCTTTAAGAACTACGACAATGGTCTTCGCAAGGGAGCAATGTTGTTCCTGGGAATTTCCACATTCATTGAGCTTTTGTGTGTTCTATCATATGCAATTTACTTCCCGAGACTGCCTATAGTAAAGTATTACCGCTCAAAGGCAGCCTCAGAAGGCTCTAAAACAGTATCAGCTGATCTTGCCGCTGCTGGTATTCAAAAACAAGCATCAGGCACAGAATTAGGGTCATGGTATCCACTTGTTCTAGTGGCAGTGTACAATGTGTTGGATTTGATATCAAGATACATACCTGTTGTGCATTTCCTAAAGATCGAATCCAGAAAGGGTCTCATGATTGCAATCCTATCTCGTTTTTTATTCGTTCCTGCATTCTACTTCACCGCAAAATATGGTGATCAGGCAGGGATGATCATACTCACATCAGTCCTAGGATTAACAAATGGTTATCTCAGTGTCTGTGTAATGACAGTGGCACCGCGCGGTTATAAGGGCCCTGAGCAAAATGCCTTGGGAAACATTCTTGTGCTGTGTCTTTTGTGTGGCATATTTGTTGGGGGTTGCCTTAACTGGTTATGGCTCATTGGTAAAGACACATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009856 GO:0009987 GO:0010154 GO:0012505 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019322 GO:0019566 GO:0019567 GO:0022414 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044238 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046364 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050373 GO:0051704 GO:0061458 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

353

Amino Acids

38.38

Weight (kDa)

8.47

Isoelectric Point (pI)

34.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoside_tran	PF01733	108 - 205	3.1e-10	Nucleoside transporter
Nucleoside_tran	PF01733	231 - 346	8.7e-15	Nucleoside transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20460 AT5G44480 AT5G44480 AT5G44480 AT5G44480
fragaria_vesca	FvH4_3g11380 FvH4_3g11380 FvH4_3g11380 FvH4_3g11380 FvH4_3g11380 FvH4_3g11380
malus_domestica	MD05G1263800.v1.1 MD10G1241500.v1.1
prunus_persica	Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1
pyrus_communis	pycom05g24780 pycom10g20250
rosa_chinensis	RchiOBHm_Chr5g0018331
rosa_laevigata	RLG00000032352
rosa_multiflora	Rmu_sc0011919.1_g000008
rosa_roxburghii	Rroxscaffold_1G00059410
rosa_rugosa	Rorug05G0041300 Rorug05G0041300 Rorug05G0041400 Rorug05G0041500
rosa_samantha	Rh5AG134800 Rh5BG133400 Rh5CG145200 Rh5DG134800
rosa_wichuraiana	Rw5G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	948
AarI	CACCTGC	1 cut(s)	413
Acc36I	ACCTGC	1 cut(s)	413
AccB1I	GGYRCC	1 cut(s)	934
AccBSI	CCGCTC	1 cut(s)	597
AccII	CGCG	3 cut(s)	157, 940, 942
AccIII	TCCGGA	1 cut(s)	139
AciI	CCGC	6 cut(s)	157, 595, 645, 843, 938, 942
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	2 cut(s)	386, 516
AcuI	CTGAAG	1 cut(s)	17
AfaI	GTAC	1 cut(s)	719
AfiI	CCNNNNNNNGG	2 cut(s)	35, 601
AflII	CTTAAG	1 cut(s)	442
AgsI	TTSAA	2 cut(s)	347, 659
AjnI	CCWGG	1 cut(s)	510
AluBI	AGCT	6 cut(s)	50, 263, 367, 461, 535, 635
AluI	AGCT	6 cut(s)	50, 263, 367, 461, 535, 635
Alw26I	GTCTC	2 cut(s)	565, 794
AlwI	GGATC	1 cut(s)	254
AlwNI	CAGNNNCTG	1 cut(s)	918
Ama87I	CYCGRG	1 cut(s)	568
Aor13HI	TCCGGA	1 cut(s)	139
AoxI	GGCC	1 cut(s)	952
ApaI	GGGCCC	1 cut(s)	956
ApeKI	GCWGC	4 cut(s)	419, 461, 605, 647
ApoI	RAATTY	2 cut(s)	386, 516
AspA2I	CCTAGG	1 cut(s)	889
AspLEI	GCGC	1 cut(s)	942
AspS9I	GGNCC	2 cut(s)	952, 953
AsuHPI	GGTGA	5 cut(s)	118, 374, 463, 832, 866
AvaI	CYCGRG	1 cut(s)	568
AvrII	CCTAGG	1 cut(s)	889
BaeGI	GKGCMC	3 cut(s)	340, 383, 956
BanI	GGYRCC	1 cut(s)	934
BanII	GRGCYC	1 cut(s)	956
BbsI	GAAGAC	1 cut(s)	479
BbvI	GCAGC	4 cut(s)	431, 448, 617, 634
BccI	CCATC	1 cut(s)	156
BciT130I	CCWGG	1 cut(s)	512
BciVI	GTATCC	1 cut(s)	705
BclI	TGATCA	2 cut(s)	856, 870
BcoDI	GTCTC	2 cut(s)	565, 794
BfaI	CTAG	3 cut(s)	77, 707, 890
BfmI	CTRYAG	2 cut(s)	111, 579
BfrI	CTTAAG	1 cut(s)	442
BfuAI	ACCTGC	1 cut(s)	413
BfuI	GTATCC	1 cut(s)	705
BisI	GCNGC	5 cut(s)	420, 462, 606, 645, 648
BlnI	CCTAGG	1 cut(s)	889
BlsI	GCNGC	5 cut(s)	421, 463, 607, 646, 649
Bme1390I	CCNGG	1 cut(s)	512
BmeT110I	CYCGRG	1 cut(s)	568
BmgT120I	GGNCC	2 cut(s)	952, 953
BmiI	GGNNCC	2 cut(s)	936, 954
BmrFI	CCNGG	1 cut(s)	512
BmsI	GCATC	2 cut(s)	13, 677
BoxI	GACNNNNGTC	1 cut(s)	483
BpiI	GAAGAC	1 cut(s)	479
BpmI	CTGGAG	1 cut(s)	297
Bpu10I	CCTNAGC	1 cut(s)	957
BsaBI	GATNNNNATC	1 cut(s)	800
BsaI	GGTCTC	1 cut(s)	794
BsaJI	CCNNGG	4 cut(s)	15, 511, 889, 969
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 601
Bse1I	ACTGG	3 cut(s)	280, 394, 1034
Bse3DI	GCAATG	1 cut(s)	507
Bse8I	GATNNNNATC	1 cut(s)	800
BseAI	TCCGGA	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	4 cut(s)	15, 511, 889, 969
BseGI	GGATG	3 cut(s)	148, 390, 873
BseJI	GATNNNNATC	1 cut(s)	800
BseLI	CCNNNNNNNGG	2 cut(s)	35, 601
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	3 cut(s)	624, 925, 948
BseNI	ACTGG	3 cut(s)	280, 394, 1034
BseSI	GKGCMC	3 cut(s)	340, 383, 956
BseXI	GCAGC	4 cut(s)	431, 448, 617, 634
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	3 cut(s)	157, 940, 942
BshFI	GGCC	1 cut(s)	954
BshNI	GGYRCC	1 cut(s)	934
BsiHKCI	CYCGRG	1 cut(s)	568
BsiSI	CCGG	1 cut(s)	140
BslFI	GGGAC	3 cut(s)	51, 94, 286
BslI	CCNNNNNNNGG	2 cut(s)	35, 601
BsmAI	GTCTC	2 cut(s)	565, 794
BsmFI	GGGAC	3 cut(s)	51, 94, 286
BsmI	GAATGC	1 cut(s)	830
BsnI	GGCC	1 cut(s)	954
Bso31I	GGTCTC	1 cut(s)	794
BsoBI	CYCGRG	1 cut(s)	568
Bsp120I	GGGCCC	1 cut(s)	952
Bsp1286I	GDGCHC	3 cut(s)	340, 383, 956
Bsp13I	TCCGGA	1 cut(s)	139
Bsp1407I	TGTACA	1 cut(s)	717
Bsp143I	GATC	5 cut(s)	246, 637, 771, 856, 870
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	6 cut(s)	157, 595, 645, 843, 938, 942
BspANI	GGCC	1 cut(s)	954
BspCNI	CTCAG	3 cut(s)	623, 924, 949
BspEI	TCCGGA	1 cut(s)	139
BspFNI	CGCG	3 cut(s)	157, 940, 942
BspHI	TCATGA	1 cut(s)	792
BspLI	GGNNCC	2 cut(s)	936, 954
BspMI	ACCTGC	1 cut(s)	413
BspPI	GGATC	1 cut(s)	254
BspT107I	GGYRCC	1 cut(s)	934
BspTI	CTTAAG	1 cut(s)	442
BspTNI	GGTCTC	1 cut(s)	794
BsrBI	CCGCTC	1 cut(s)	597
BsrDI	GCAATG	1 cut(s)	507
BsrGI	TGTACA	1 cut(s)	717
BsrI	ACTGG	3 cut(s)	280, 394, 1034
BssECI	CCNNGG	4 cut(s)	15, 511, 889, 969
BssMI	GATC	5 cut(s)	246, 637, 771, 856, 870
BssT1I	CCWWGG	3 cut(s)	15, 889, 969
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	4 cut(s)	42, 101, 628, 931
BstAFI	CTTAAG	1 cut(s)	442
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstAUI	TGTACA	1 cut(s)	717
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	4 cut(s)	250, 610, 911, 957
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	3 cut(s)	148, 390, 873
BstFNI	CGCG	3 cut(s)	157, 940, 942
BstHHI	GCGC	1 cut(s)	942
BstKTI	GATC	5 cut(s)	249, 640, 774, 859, 873
BstMAI	GTCTC	2 cut(s)	565, 794
BstMBI	GATC	5 cut(s)	246, 637, 771, 856, 870
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 425, 641
BstNI	CCWGG	1 cut(s)	512
BstPAI	GACNNNNGTC	1 cut(s)	483
BstSCI	CCNGG	1 cut(s)	510
BstSFI	CTRYAG	2 cut(s)	111, 579
BstSLI	GKGCMC	3 cut(s)	340, 383, 956
BstUI	CGCG	3 cut(s)	157, 940, 942
BstV1I	GCAGC	4 cut(s)	431, 448, 617, 634
BstV2I	GAAGAC	1 cut(s)	479
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BsuI	GTATCC	1 cut(s)	705
BsuRI	GGCC	1 cut(s)	954
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	3 cut(s)	148, 390, 873
BtsI	GCAGTG	1 cut(s)	720
BtsIMutI	CAGTG	3 cut(s)	720, 919, 936
BveI	ACCTGC	1 cut(s)	413
Cac8I	GCNNGC	1 cut(s)	409
CaiI	CAGNNNCTG	1 cut(s)	918
CciI	TCATGA	1 cut(s)	792
CfoI	GCGC	1 cut(s)	942
Cfr13I	GGNCC	2 cut(s)	952, 953
Csp6I	GTAC	1 cut(s)	718
CspCI	CAANNNNNGTGG	2 cut(s)	511, 546
CviAII	CATG	4 cut(s)	16, 341, 690, 793
CviQI	GTAC	1 cut(s)	718
DdeI	CTNAG	4 cut(s)	250, 610, 911, 957
DpnI	GATC	5 cut(s)	248, 639, 773, 858, 872
DpnII	GATC	5 cut(s)	246, 637, 771, 856, 870
Eco130I	CCWWGG	3 cut(s)	15, 889, 969
Eco24I	GRGCYC	1 cut(s)	956
Eco31I	GGTCTC	1 cut(s)	794
Eco32I	GATATC	1 cut(s)	738
Eco57I	CTGAAG	1 cut(s)	17
Eco88I	CYCGRG	1 cut(s)	568
EcoO109I	RGGNCCY	2 cut(s)	952, 953
EcoRI	GAATTC	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	510
EcoRV	GATATC	1 cut(s)	738
EcoT14I	CCWWGG	3 cut(s)	15, 889, 969
EcoT38I	GRGCYC	1 cut(s)	956
ErhI	CCWWGG	3 cut(s)	15, 889, 969
FaeI	CATG	4 cut(s)	19, 344, 693, 796
FaqI	GGGAC	3 cut(s)	51, 94, 286
FatI	CATG	4 cut(s)	15, 340, 689, 792
FauI	CCCGC	1 cut(s)	150
FauNDI	CATATG	1 cut(s)	553
FbaI	TGATCA	2 cut(s)	856, 870
Fnu4HI	GCNGC	5 cut(s)	420, 462, 606, 645, 648
FokI	GGATG	3 cut(s)	135, 377, 880
FriOI	GRGCYC	1 cut(s)	956
Fsp4HI	GCNGC	5 cut(s)	420, 462, 606, 645, 648
FspBI	CTAG	3 cut(s)	77, 707, 890
GlaI	GCGC	1 cut(s)	941
GluI	GCNGC	5 cut(s)	420, 462, 606, 645, 648
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	954
HapII	CCGG	1 cut(s)	140
HhaI	GCGC	1 cut(s)	942
Hin1II	CATG	4 cut(s)	19, 344, 693, 796
Hin6I	GCGC	1 cut(s)	940
HinP1I	GCGC	1 cut(s)	940
HinfI	GANTC	2 cut(s)	82, 776
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	5 cut(s)	118, 374, 463, 832, 866
Hpy166II	GTNNAC	1 cut(s)	718
Hpy188I	TCNGA	1 cut(s)	613
Hpy188III	TCNNGA	5 cut(s)	140, 568, 741, 780, 793
Hpy8I	GTNNAC	1 cut(s)	718
HpyAV	CCTTC	5 cut(s)	162, 234, 341, 409, 608
HpyCH4III	ACNGT	4 cut(s)	42, 101, 628, 931
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 425, 641
HpyF3I	CTNAG	4 cut(s)	250, 610, 911, 957
Hsp92II	CATG	4 cut(s)	19, 344, 693, 796
HspAI	GCGC	1 cut(s)	940
Kpn2I	TCCGGA	1 cut(s)	139
Ksp22I	TGATCA	2 cut(s)	856, 870
Kzo9I	GATC	5 cut(s)	246, 637, 771, 856, 870
LmnI	GCTCC	2 cut(s)	31, 497
Lsp1109I	GCAGC	4 cut(s)	431, 448, 617, 634
LweI	GCATC	2 cut(s)	13, 677
MaeI	CTAG	3 cut(s)	77, 707, 890
MaeIII	GTNAC	2 cut(s)	106, 451
MalI	GATC	5 cut(s)	248, 639, 773, 858, 872
MbiI	CCGCTC	1 cut(s)	597
MboI	GATC	5 cut(s)	246, 637, 771, 856, 870
MboII	GAAGA	2 cut(s)	128, 479
MfeI	CAATTG	1 cut(s)	309
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	3 cut(s)	340, 383, 956
MluCI	AATT	5 cut(s)	309, 386, 516, 558, 680
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	1 cut(s)	708
MnlI	CCTC	4 cut(s)	214, 237, 272, 619
MroI	TCCGGA	1 cut(s)	139
MseI	TTAA	5 cut(s)	443, 468, 896, 1026, 1060
MslI	CAYNNNNRTG	1 cut(s)	983
MspA1I	CMGCKG	2 cut(s)	635, 647
MspCI	CTTAAG	1 cut(s)	442
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	512
MunI	CAATTG	1 cut(s)	309
Mva1269I	GAATGC	1 cut(s)	830
MvaI	CCWGG	1 cut(s)	512
MvnI	CGCG	3 cut(s)	157, 940, 942
MwoI	GCNNNNNNNGC	3 cut(s)	200, 425, 641
NcoI	CCATGG	1 cut(s)	15
NdeI	CATATG	1 cut(s)	553
NdeII	GATC	5 cut(s)	246, 637, 771, 856, 870
NlaIII	CATG	4 cut(s)	19, 344, 693, 796
NlaIV	GGNNCC	2 cut(s)	936, 954
NmuCI	GTSAC	2 cut(s)	106, 451
PagI	TCATGA	1 cut(s)	792
PaqCI	CACCTGC	1 cut(s)	413
PctI	GAATGC	1 cut(s)	830
PfeI	GAWTC	1 cut(s)	776
PkrI	GCNGC	5 cut(s)	421, 463, 607, 646, 649
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PshAI	GACNNNNGTC	1 cut(s)	483
PsiI	TTATAA	1 cut(s)	948
Psp6I	CCWGG	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	2 cut(s)	936, 954
PspOMI	GGGCCC	1 cut(s)	952
PspPI	GGNCC	2 cut(s)	952, 953
PstNI	CAGNNNCTG	1 cut(s)	918
PsuI	RGATCY	1 cut(s)	246
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	1 cut(s)	719
RsaNI	GTAC	1 cut(s)	718
RseI	CAYNNNNRTG	1 cut(s)	983
SaqAI	TTAA	5 cut(s)	443, 468, 896, 1026, 1060
SatI	GCNGC	5 cut(s)	420, 462, 606, 645, 648
Sau3AI	GATC	5 cut(s)	246, 637, 771, 856, 870
Sau96I	GGNCC	2 cut(s)	952, 953
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	3 cut(s)	340, 383, 956
SfaNI	GCATC	2 cut(s)	13, 677
SfcI	CTRYAG	2 cut(s)	111, 579
SmiMI	CAYNNNNRTG	1 cut(s)	983
SmlI	CTYRAG	1 cut(s)	442
SmoI	CTYRAG	1 cut(s)	442
Sse9I	AATT	5 cut(s)	309, 386, 516, 558, 680
SsiI	CCGC	6 cut(s)	157, 595, 645, 843, 938, 942
SspI	AATATT	2 cut(s)	198, 207
SspMI	CTAG	3 cut(s)	77, 707, 890
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	3 cut(s)	15, 889, 969
TaaI	ACNGT	4 cut(s)	42, 101, 628, 931
TaqI	TCGA	1 cut(s)	774
TasI	AATT	5 cut(s)	309, 386, 516, 558, 680
TatI	WGTACW	1 cut(s)	717
TauI	GCSGC	1 cut(s)	647
TfiI	GAWTC	1 cut(s)	776
Tru1I	TTAA	5 cut(s)	443, 468, 896, 1026, 1060
Tru9I	TTAA	5 cut(s)	443, 468, 896, 1026, 1060
TscAI	CASTG	3 cut(s)	720, 919, 936
TseFI	GTSAC	2 cut(s)	106, 451
TseI	GCWGC	4 cut(s)	419, 461, 605, 647
Tsp45I	GTSAC	2 cut(s)	106, 451
TspDTI	ATGAA	3 cut(s)	201, 379, 517
TspRI	CASTG	3 cut(s)	720, 919, 936
Vha464I	CTTAAG	1 cut(s)	442
XapI	RAATTY	2 cut(s)	386, 516
XcmI	CCANNNNNNNNNTGG	1 cut(s)	347
XmaJI	CCTAGG	1 cut(s)	889
XspI	CTAG	3 cut(s)	77, 707, 890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.