Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010158

Physical Location & Seq

Genomic Coordinates Reverse (-)

18404015 .. 18406693

Gene Structure 2679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G45420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGATTTTTTCGACGAAGACAGGCCTAGATTCGTTTTCCAATCTCGTCCTTCTTCTTCTCACACGGCGGAGGAAGAAGAAGAAGCTAGAATCCCTAACAAGCTTTTCATTTCAATCTCCGTCTCAATCTCCCTCATCATATTATCTCTCTCCTTCTTCTACTTCGAATCTGAACCTGCCAAATCGCTACTATTATGGCTTTCCCTCTCTTTCCTCGTCGGTCCTTTCGCTCCTAGCTCGCTCACCGGAGGTAAGATTCGCGTCGGTTATGGTCAGATCTTGGAGCCAGAACAGATTCACGATGAGTCATCCACGGATAACGAACGTGAATCCAGGAGGAAATCGGTGAATAAGCGATCTAAAGGTTCGACGAAGAGCGATAATCCGCCGGAAAATGCTTCTGCGGTGACTGAAGTTTCGAGGAAAGTGGTGATTCCGCAGTCTAAGGAGAGTGGATCTGTGAATGAAACTAAAGATTGGACTGCTGAAGAGATCGAGATTTTGAAGAAGCAGTTGATTAAGCATCCAGCTGGTAAACCTGGGAGATGGGAGACGGTGGCTTCAGCGTTCGGAGGAAGATACAAGACAGAGAATGTGATTAAGAAGGCGAAAGAGATAGGTGAGAAGAAAATCTATGAGAGTGATGATTACGCTCAGTTTTTAAAGAATAGGAAAGCTTCAGATCCTAGATTGGTTGATGAAAACGAAGAGAATTCTGGAGCTGGTGGAGATGCGGAAGGTACTAAGGAGATTTGGAGTAATGGAGAAGACATTGCATTGCTCAATGCTTTAAAAGCTTTTCCTAAGGAGGCAGCTATGAGATGGGAGAAGATTGCAGCTGCAGTACCTGGGAAGTCGAAAGCAGCTTGTATGAAGAGAGTTACTGAGCTTAAAAAAGGGTTTCGGAGCTCGAAAACTCCAGCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016020 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040007 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060560 GO:0061649 GO:0065007 GO:0071695 GO:0071944 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140030 GO:0140035 GO:0140036 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

309

Amino Acids

34.36

Weight (kDa)

8.38

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding_2	PF23082	158 - 228	2.2e-29	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45420 AT5G45420 AT5G45420
fragaria_vesca	FvH4_5g21140
malus_domestica	MD06G1040800.v1.1 MD16G1268900.v1.1
prunus_persica	Prupe.5G047100_v2.0.a1 Prupe.5G047100_v2.0.a1
pyrus_communis	pycom06g03400 pycom16g23790
rosa_chinensis	RchiOBHm_Chr7g0208261
rosa_laevigata	RLG00000003234
rosa_multiflora	Rmu_sc0000841.1_g000022 Rmu_sc0007869.1_g000020
rosa_roxburghii	Rroxscaffold_3G00250630
rosa_rugosa	Rorug07G0102600
rosa_samantha	Rh7AG236800 Rh7BG232400 Rh7CG252700 Rh7DG242800
rosa_wichuraiana	Rw7G020210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	184
AccII	CGCG	1 cut(s)	261
AciI	CCGC	5 cut(s)	68, 386, 404, 437, 734
AclWI	GGATC	2 cut(s)	463, 677
AcsI	RAATTY	1 cut(s)	712
AcuI	CTGAAG	4 cut(s)	432, 507, 546, 663
AfaI	GTAC	2 cut(s)	742, 846
AgsI	TTSAA	2 cut(s)	114, 505
AjnI	CCWGG	3 cut(s)	332, 538, 847
Alw21I	GWGCWC	1 cut(s)	911
Alw26I	GTCTC	2 cut(s)	127, 545
AlwI	GGATC	2 cut(s)	463, 677
AlwNI	CAGNNNCTG	1 cut(s)	848
AoxI	GGCC	1 cut(s)	23
ApeKI	GCWGC	4 cut(s)	812, 836, 839, 863
ApoI	RAATTY	1 cut(s)	712
ArsI	GACNNNNNNTTYG	2 cut(s)	400, 432
Asp700I	GAANNNNTTC	1 cut(s)	294
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	5 cut(s)	235, 358, 418, 442, 632
AsuII	TTCGAA	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	221
AxyI	CCTNAGG	1 cut(s)	804
BanII	GRGCYC	1 cut(s)	911
BbsI	GAAGAC	2 cut(s)	24, 774
Bbv12I	GWGCWC	1 cut(s)	911
BbvI	GCAGC	4 cut(s)	824, 826, 848, 875
BccI	CCATC	2 cut(s)	540, 816
BceAI	ACGGC	1 cut(s)	81
BciT130I	CCWGG	3 cut(s)	334, 540, 849
BcoDI	GTCTC	2 cut(s)	127, 545
BfaI	CTAG	4 cut(s)	27, 87, 234, 687
BfmI	CTRYAG	1 cut(s)	840
BfuAI	ACCTGC	1 cut(s)	184
BglII	AGATCT	1 cut(s)	276
BisI	GCNGC	4 cut(s)	813, 837, 840, 864
BlsI	GCNGC	4 cut(s)	814, 838, 841, 865
Bme1390I	CCNGG	3 cut(s)	334, 540, 849
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	3 cut(s)	334, 540, 849
BmsI	GCATC	2 cut(s)	532, 721
BpiI	GAAGAC	2 cut(s)	24, 774
BpmI	CTGGAG	2 cut(s)	738, 903
Bpu14I	TTCGAA	1 cut(s)	165
BsaJI	CCNNGG	3 cut(s)	312, 539, 848
BsaWI	WCCGGW	1 cut(s)	245
Bse21I	CCTNAGG	1 cut(s)	804
Bse3DI	GCAATG	2 cut(s)	771, 776
BseBI	CCWGG	3 cut(s)	334, 540, 849
BseDI	CCNNGG	3 cut(s)	312, 539, 848
BseGI	GGATG	2 cut(s)	308, 523
BseMI	GCAATG	2 cut(s)	771, 776
BseMII	CTCAG	2 cut(s)	668, 876
BseXI	GCAGC	4 cut(s)	824, 826, 848, 875
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	911
BsiSI	CCGG	2 cut(s)	246, 389
BsmAI	GTCTC	2 cut(s)	127, 545
BsmBI	CGTCTC	2 cut(s)	127, 545
BsnI	GGCC	1 cut(s)	25
Bsp119I	TTCGAA	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	911
Bsp143I	GATC	5 cut(s)	276, 356, 455, 492, 682
BspACI	CCGC	5 cut(s)	68, 386, 404, 437, 734
BspANI	GGCC	1 cut(s)	25
BspCNI	CTCAG	2 cut(s)	667, 877
BspFNI	CGCG	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	285
BspMAI	CTGCAG	1 cut(s)	844
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	2 cut(s)	463, 677
BspQI	GCTCTTC	1 cut(s)	368
BspT104I	TTCGAA	1 cut(s)	165
BsrDI	GCAATG	2 cut(s)	771, 776
BssECI	CCNNGG	3 cut(s)	312, 539, 848
BssMI	GATC	5 cut(s)	276, 356, 455, 492, 682
Bst2UI	CCWGG	3 cut(s)	334, 540, 849
Bst4CI	ACNGT	1 cut(s)	556
Bst6I	CTCTTC	4 cut(s)	368, 483, 702, 869
BstBI	TTCGAA	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	5 cut(s)	444, 654, 744, 804, 885
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	2 cut(s)	308, 523
BstFNI	CGCG	1 cut(s)	261
BstKTI	GATC	5 cut(s)	279, 359, 458, 495, 685
BstMAI	GTCTC	2 cut(s)	127, 545
BstMBI	GATC	5 cut(s)	276, 356, 455, 492, 682
BstMWI	GCNNNNNNNGC	1 cut(s)	794
BstNI	CCWGG	3 cut(s)	334, 540, 849
BstSCI	CCNGG	3 cut(s)	332, 538, 847
BstSFI	CTRYAG	1 cut(s)	840
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	4 cut(s)	824, 826, 848, 875
BstV2I	GAAGAC	2 cut(s)	24, 774
BstX2I	RGATCY	3 cut(s)	276, 455, 682
BstYI	RGATCY	3 cut(s)	276, 455, 682
Bsu36I	CCTNAGG	1 cut(s)	804
BsuRI	GGCC	1 cut(s)	25
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	2 cut(s)	308, 523
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	239
CaiI	CAGNNNCTG	1 cut(s)	848
Cfr13I	GGNCC	1 cut(s)	221
CseI	GACGC	1 cut(s)	250
Csp6I	GTAC	2 cut(s)	741, 845
CviQI	GTAC	2 cut(s)	741, 845
DdeI	CTNAG	5 cut(s)	444, 654, 744, 804, 885
DpnI	GATC	5 cut(s)	278, 358, 457, 494, 684
DpnII	GATC	5 cut(s)	276, 356, 455, 492, 682
DraI	TTTAAA	2 cut(s)	663, 792
Eam1104I	CTCTTC	4 cut(s)	368, 483, 702, 869
EarI	CTCTTC	4 cut(s)	368, 483, 702, 869
EciI	GGCGGA	2 cut(s)	83, 375
Ecl136II	GAGCTC	1 cut(s)	909
Eco147I	AGGCCT	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	911
Eco47I	GGWCC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	909
Eco57I	CTGAAG	4 cut(s)	432, 507, 546, 663
Eco81I	CCTNAGG	1 cut(s)	804
EcoICRI	GAGCTC	1 cut(s)	909
EcoRI	GAATTC	1 cut(s)	712
EcoRII	CCWGG	3 cut(s)	332, 538, 847
EcoT38I	GRGCYC	1 cut(s)	911
Esp3I	CGTCTC	2 cut(s)	127, 545
FaiI	YATR	6 cut(s)	140, 196, 270, 636, 818, 872
Fnu4HI	GCNGC	4 cut(s)	813, 837, 840, 864
FokI	GGATG	2 cut(s)	295, 510
FriOI	GRGCYC	1 cut(s)	911
Fsp4HI	GCNGC	4 cut(s)	813, 837, 840, 864
FspBI	CTAG	4 cut(s)	27, 87, 234, 687
GluI	GCNGC	4 cut(s)	813, 837, 840, 864
GsuI	CTGGAG	2 cut(s)	738, 903
HaeIII	GGCC	1 cut(s)	25
HapII	CCGG	2 cut(s)	246, 389
HgaI	GACGC	1 cut(s)	250
HindIII	AAGCTT	3 cut(s)	101, 675, 795
HinfI	GANTC	8 cut(s)	30, 90, 167, 256, 295, 305, 329, 433
HpaII	CCGG	2 cut(s)	246, 389
HphI	GGTGA	5 cut(s)	235, 358, 418, 442, 632
Hpy166II	GTNNAC	1 cut(s)	536
Hpy188I	TCNGA	5 cut(s)	172, 276, 572, 682, 906
Hpy188III	TCNNGA	3 cut(s)	299, 496, 717
Hpy8I	GTNNAC	1 cut(s)	536
Hpy99I	CGWCG	4 cut(s)	17, 221, 266, 373
HpyAV	CCTTC	4 cut(s)	60, 163, 598, 731
HpyCH4III	ACNGT	1 cut(s)	556
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	3 cut(s)	776, 836, 842
HpyF10VI	GCNNNNNNNGC	1 cut(s)	794
HpyF3I	CTNAG	5 cut(s)	444, 654, 744, 804, 885
HpySE526I	ACGT	1 cut(s)	325
Kzo9I	GATC	5 cut(s)	276, 356, 455, 492, 682
LguI	GCTCTTC	1 cut(s)	368
LmnI	GCTCC	4 cut(s)	235, 283, 719, 906
Lsp1109I	GCAGC	4 cut(s)	824, 826, 848, 875
LweI	GCATC	2 cut(s)	532, 721
MaeI	CTAG	4 cut(s)	27, 87, 234, 687
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	2 cut(s)	406, 880
MalI	GATC	5 cut(s)	278, 358, 457, 494, 684
MboI	GATC	5 cut(s)	276, 356, 455, 492, 682
MflI	RGATCY	3 cut(s)	276, 455, 682
MhlI	GDGCHC	1 cut(s)	911
MluCI	AATT	2 cut(s)	712, 925
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	9 cut(s)	64, 143, 215, 224, 242, 330, 414, 566, 802
MroXI	GAANNNNTTC	1 cut(s)	294
MseI	TTAA	6 cut(s)	519, 600, 662, 791, 891, 928
MspA1I	CMGCKG	2 cut(s)	530, 839
MspI	CCGG	2 cut(s)	246, 389
MspR9I	CCNGG	3 cut(s)	334, 540, 849
MvaI	CCWGG	3 cut(s)	334, 540, 849
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	794
NdeII	GATC	5 cut(s)	276, 356, 455, 492, 682
NlaIV	GGNNCC	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	406
NspV	TTCGAA	1 cut(s)	165
PceI	AGGCCT	1 cut(s)	25
PciSI	GCTCTTC	1 cut(s)	368
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	7 cut(s)	30, 90, 167, 256, 295, 329, 433
PfoI	TCCNGGA	1 cut(s)	332
PkrI	GCNGC	4 cut(s)	814, 838, 841, 865
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
Psp124BI	GAGCTC	1 cut(s)	911
Psp6I	CCWGG	3 cut(s)	332, 538, 847
PspGI	CCWGG	3 cut(s)	332, 538, 847
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	221
PstI	CTGCAG	1 cut(s)	844
PstNI	CAGNNNCTG	1 cut(s)	848
PsuI	RGATCY	3 cut(s)	276, 455, 682
PvuII	CAGCTG	2 cut(s)	530, 839
RsaI	GTAC	2 cut(s)	742, 846
RsaNI	GTAC	2 cut(s)	741, 845
SacI	GAGCTC	1 cut(s)	911
SapI	GCTCTTC	1 cut(s)	368
SaqAI	TTAA	6 cut(s)	519, 600, 662, 791, 891, 928
SatI	GCNGC	4 cut(s)	813, 837, 840, 864
Sau3AI	GATC	5 cut(s)	276, 356, 455, 492, 682
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	3 cut(s)	334, 540, 849
SduI	GDGCHC	1 cut(s)	911
SfaNI	GCATC	2 cut(s)	532, 721
SfcI	CTRYAG	1 cut(s)	840
SfuI	TTCGAA	1 cut(s)	165
SinI	GGWCC	1 cut(s)	221
Sse9I	AATT	2 cut(s)	712, 925
SseBI	AGGCCT	1 cut(s)	25
SsiI	CCGC	5 cut(s)	68, 386, 404, 437, 734
SspMI	CTAG	4 cut(s)	27, 87, 234, 687
SstI	GAGCTC	1 cut(s)	911
StuI	AGGCCT	1 cut(s)	25
StyD4I	CCNGG	3 cut(s)	332, 538, 847
TaaI	ACNGT	1 cut(s)	556
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	7 cut(s)	12, 165, 368, 419, 495, 857, 911
TaqII	GACCGA	1 cut(s)	209
TasI	AATT	2 cut(s)	712, 925
TfiI	GAWTC	7 cut(s)	30, 90, 167, 256, 295, 329, 433
Tru1I	TTAA	6 cut(s)	519, 600, 662, 791, 891, 928
Tru9I	TTAA	6 cut(s)	519, 600, 662, 791, 891, 928
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	4 cut(s)	812, 836, 839, 863
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	4 cut(s)	97, 480, 714, 887
TspGWI	ACGGA	2 cut(s)	109, 329
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	712
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	4 cut(s)	27, 87, 234, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.