Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0010158

Physical Location & Seq

Genomic Coordinates Reverse (-)

5210565 .. 5213375

Gene Structure 2811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1040800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAGTTTTTGGATGAGGACGCAAGGCCTAGGTTCCTCTTCCAATCCAAAGCAGTAGCTTCTTCTGCCGCAGACCCGCAACCCCATTACAAGAATCTCAGCAAACCATTCATTTTCTTTACCATCTTGATCTCGTTTCTGTTACTGGGTCTCGCCTTCTTCCTCCAATCCGAACCCTACCAATCTCTTCTTATATGGGCCGCTCTCGCCCTCCTCATTGGCCCCTTCGCTCCTGCACCTGTCACTGGTGGTGACATTCGGGTTGGTCATGGCCCAATCGTTGACTTCCCAGAAATTGCAACCCAAGTAGAGGATGAATCAAAGAAGAGGGTTTCTCAGAAGAGATCAAAACCACGTCGATTTGATGAATTGGGTGCAGATTCAACGCCCGTGCCCGAAACAATTAGTGGGTCTGTGAGAGAAAAGAAAAGGAGTGAGGCTTCCGAAGGTAATGGTAATGGATCAGTGGTTTTTGGTGAAGAGACGGAGTGGGTTGAGGAGGATGTTGAGTTCTTGAAGAAACTGCTTTTGAAGCACCCGGTGGGGACACTGAGACGGTGGGAGGTTATCACCGAATCCTTTCAAGGAAAGCATAAGGTGGAGAGTGTGATAAAAAGGGCCAAAGAATTGGGAGAGAAGAAAGTGAGTGATGCAGATTCGTATGCAGAGTTTCTGAAGAAGCGTAAGCCCAATGACAAGAAAACTGAAAGTGGGAATCAAGAGTTGGGTGATGAGTCGGTGGCGGAAAATGGTGAAGTGAAGAAAGAGAGTTGGTCTTCTACTGAAGACATTGCATTGCTGAATGCCTTGAAGGCATTTCCAAAGGAAGTGTCAATGAGGTGGGAGAAGATTGCAGCTGCTGTGCCTGGGAAGTCGAAGGCTGCTTGTATGAAGAGAGTTGCTGAGTTGAAGAAGGGCTTTCGGAGCGCCAAGGCTTCTAACGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016020 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040007 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060560 GO:0061649 GO:0065007 GO:0071695 GO:0071944 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140030 GO:0140035 GO:0140036 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

317

Amino Acids

35.15

Weight (kDa)

7.73

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding_2	PF23082	163 - 232	3.3e-31	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	255 - 299	9.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45420 AT5G45420 AT5G45420
fragaria_vesca	FvH4_5g21140
malus_domestica	MD06G1040800.v1.1 MD16G1268900.v1.1
prunus_persica	Prupe.5G047100_v2.0.a1 Prupe.5G047100_v2.0.a1
pyrus_communis	pycom06g03400 pycom16g23790
rosa_chinensis	RchiOBHm_Chr7g0208261
rosa_laevigata	RLG00000003234
rosa_multiflora	Rmu_sc0000841.1_g000022 Rmu_sc0007869.1_g000020
rosa_roxburghii	Rroxscaffold_3G00250630
rosa_rugosa	Rorug07G0102600
rosa_samantha	Rh7AG236800 Rh7BG232400 Rh7CG252700 Rh7DG242800
rosa_wichuraiana	Rw7G020210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	203
AciI	CCGC	4 cut(s)	69, 77, 201, 743
AclWI	GGATC	1 cut(s)	469
AcuI	CTGAAG	2 cut(s)	695, 804
AdeI	CACNNNGTG	1 cut(s)	541
AfiI	CCNNNNNNNGG	2 cut(s)	245, 310
AgsI	TTSAA	6 cut(s)	384, 517, 532, 584, 811, 910
AjiI	CACGTC	1 cut(s)	356
AjnI	CCWGG	1 cut(s)	865
AjuI	GAANNNNNNNTTGG	2 cut(s)	707, 739
AloI	GAACNNNNNNTCC	2 cut(s)	494, 526
AluBI	AGCT	2 cut(s)	59, 857
AluI	AGCT	2 cut(s)	59, 857
Alw26I	GTCTC	3 cut(s)	155, 476, 547
AlwI	GGATC	1 cut(s)	469
AlwNI	CAGNNNCTG	1 cut(s)	860
AoxI	GGCC	5 cut(s)	26, 198, 220, 271, 618
ApeKI	GCWGC	3 cut(s)	854, 857, 881
ArsI	GACNNNNNNTTYG	2 cut(s)	815, 847
Asp700I	GAANNNNTTC	1 cut(s)	579
AspA2I	CCTAGG	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	929
AspS9I	GGNCC	4 cut(s)	198, 221, 272, 618
AsuC2I	CCSGG	1 cut(s)	539
AsuHPI	GGTGA	5 cut(s)	263, 488, 562, 740, 764
AvrII	CCTAGG	1 cut(s)	29
BaeGI	GKGCMC	1 cut(s)	396
BbsI	GAAGAC	2 cut(s)	768, 792
BbvI	GCAGC	3 cut(s)	844, 866, 868
BccI	CCATC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	867
BcnI	CCSGG	1 cut(s)	539
BcoDI	GTCTC	3 cut(s)	155, 476, 547
BfaI	CTAG	1 cut(s)	30
BfoI	RGCGCY	1 cut(s)	930
BglI	GCCNNNNNGGC	1 cut(s)	812
BisI	GCNGC	5 cut(s)	69, 201, 855, 858, 882
BlnI	CCTAGG	1 cut(s)	29
BlsI	GCNGC	5 cut(s)	70, 202, 856, 859, 883
Bme1390I	CCNGG	2 cut(s)	539, 867
BmgBI	CACGTC	1 cut(s)	356
BmgT120I	GGNCC	4 cut(s)	198, 221, 272, 618
BmiI	GGNNCC	2 cut(s)	35, 223
BmrFI	CCNGG	2 cut(s)	539, 867
BmrI	ACTGGG	1 cut(s)	155
BmsI	GCATC	1 cut(s)	640
BmuI	ACTGGG	1 cut(s)	155
BpiI	GAAGAC	2 cut(s)	768, 792
BplI	GAGNNNNNCTC	2 cut(s)	319, 351
BpuMI	CCSGG	1 cut(s)	539
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	3 cut(s)	29, 866, 930
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 310
Bse1I	ACTGG	2 cut(s)	150, 250
Bse3DI	GCAATG	2 cut(s)	789, 794
BseBI	CCWGG	1 cut(s)	867
BseDI	CCNNGG	3 cut(s)	29, 866, 930
BseGI	GGATG	3 cut(s)	19, 319, 508
BseLI	CCNNNNNNNGG	2 cut(s)	245, 310
BseMI	GCAATG	2 cut(s)	789, 794
BseMII	CTCAG	4 cut(s)	112, 350, 542, 894
BseNI	ACTGG	2 cut(s)	150, 250
BseRI	GAGGAG	2 cut(s)	203, 512
BseSI	GKGCMC	1 cut(s)	396
BseXI	GCAGC	3 cut(s)	844, 866, 868
BsgI	GTGCAG	2 cut(s)	219, 396
BshFI	GGCC	5 cut(s)	28, 200, 222, 273, 620
BsiSI	CCGG	1 cut(s)	539
BslFI	GGGAC	1 cut(s)	559
BslI	CCNNNNNNNGG	2 cut(s)	245, 310
BsmAI	GTCTC	3 cut(s)	155, 476, 547
BsmBI	CGTCTC	2 cut(s)	476, 547
BsmFI	GGGAC	1 cut(s)	559
BsmI	GAATGC	1 cut(s)	808
BsnI	GGCC	5 cut(s)	28, 200, 222, 273, 620
Bso31I	GGTCTC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	3 cut(s)	129, 344, 461
BspACI	CCGC	4 cut(s)	69, 77, 201, 743
BspANI	GGCC	5 cut(s)	28, 200, 222, 273, 620
BspCNI	CTCAG	4 cut(s)	111, 349, 543, 895
BspLI	GGNNCC	2 cut(s)	35, 223
BspPI	GGATC	1 cut(s)	469
BspTNI	GGTCTC	1 cut(s)	155
BsrBI	CCGCTC	1 cut(s)	203
BsrDI	GCAATG	2 cut(s)	789, 794
BsrI	ACTGG	2 cut(s)	150, 250
BssECI	CCNNGG	3 cut(s)	29, 866, 930
BssMI	GATC	3 cut(s)	129, 344, 461
BssT1I	CCWWGG	2 cut(s)	29, 930
Bst2UI	CCWGG	1 cut(s)	867
Bst4CI	ACNGT	1 cut(s)	558
Bst6I	CTCTTC	7 cut(s)	44, 192, 320, 335, 474, 887, 939
BstDEI	CTNAG	4 cut(s)	98, 336, 551, 903
BstF5I	GGATG	3 cut(s)	19, 319, 508
BstH2I	RGCGCY	1 cut(s)	930
BstHHI	GCGC	1 cut(s)	929
BstKTI	GATC	3 cut(s)	132, 347, 464
BstMAI	GTCTC	3 cut(s)	155, 476, 547
BstMBI	GATC	3 cut(s)	129, 344, 461
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 206, 532, 812, 924
BstNI	CCWGG	1 cut(s)	867
BstSCI	CCNGG	2 cut(s)	537, 865
BstSLI	GKGCMC	1 cut(s)	396
BstV1I	GCAGC	3 cut(s)	844, 866, 868
BstV2I	GAAGAC	2 cut(s)	768, 792
BstXI	CCANNNNNNTGG	1 cut(s)	628
BsuRI	GGCC	5 cut(s)	28, 200, 222, 273, 620
BtrI	CACGTC	1 cut(s)	356
BtsCI	GGATG	3 cut(s)	19, 319, 508
BtsIMutI	CAGTG	3 cut(s)	243, 471, 548
CaiI	CAGNNNCTG	1 cut(s)	860
CfoI	GCGC	1 cut(s)	929
Cfr13I	GGNCC	4 cut(s)	198, 221, 272, 618
CseI	GACGC	1 cut(s)	29
CviAII	CATG	1 cut(s)	269
DdeI	CTNAG	4 cut(s)	98, 336, 551, 903
DpnI	GATC	3 cut(s)	131, 346, 463
DpnII	GATC	3 cut(s)	129, 344, 461
DraIII	CACNNNGTG	1 cut(s)	541
Eam1104I	CTCTTC	7 cut(s)	44, 192, 320, 335, 474, 887, 939
EarI	CTCTTC	7 cut(s)	44, 192, 320, 335, 474, 887, 939
EciI	GGCGGA	1 cut(s)	758
Eco130I	CCWWGG	2 cut(s)	29, 930
Eco147I	AGGCCT	1 cut(s)	28
Eco31I	GGTCTC	1 cut(s)	155
Eco57I	CTGAAG	2 cut(s)	695, 804
EcoRII	CCWGG	1 cut(s)	865
EcoT14I	CCWWGG	2 cut(s)	29, 930
ErhI	CCWWGG	2 cut(s)	29, 930
Esp3I	CGTCTC	2 cut(s)	476, 547
FaeI	CATG	1 cut(s)	272
FaiI	YATR	6 cut(s)	194, 196, 270, 594, 663, 890
FalI	AAGNNNNNCTT	2 cut(s)	902, 934
FaqI	GGGAC	1 cut(s)	559
FatI	CATG	1 cut(s)	268
FauI	CCCGC	1 cut(s)	84
Fnu4HI	GCNGC	5 cut(s)	69, 201, 855, 858, 882
FokI	GGATG	3 cut(s)	26, 326, 515
Fsp4HI	GCNGC	5 cut(s)	69, 201, 855, 858, 882
FspBI	CTAG	1 cut(s)	30
GlaI	GCGC	1 cut(s)	928
GluI	GCNGC	5 cut(s)	69, 201, 855, 858, 882
HaeII	RGCGCY	1 cut(s)	930
HaeIII	GGCC	5 cut(s)	28, 200, 222, 273, 620
HapII	CCGG	1 cut(s)	539
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	1 cut(s)	929
Hin1II	CATG	1 cut(s)	272
Hin6I	GCGC	1 cut(s)	927
HinP1I	GCGC	1 cut(s)	927
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	7 cut(s)	94, 317, 380, 575, 656, 715, 734
HpaII	CCGG	1 cut(s)	539
HphI	GGTGA	5 cut(s)	263, 488, 562, 740, 764
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	5 cut(s)	172, 339, 445, 675, 924
Hpy188III	TCNNGA	3 cut(s)	127, 514, 719
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	1 cut(s)	360
HpyAV	CCTTC	6 cut(s)	166, 235, 440, 805, 871, 907
HpyCH4III	ACNGT	1 cut(s)	558
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	7 cut(s)	236, 299, 377, 653, 665, 794, 854
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 206, 532, 812, 924
HpyF3I	CTNAG	4 cut(s)	98, 336, 551, 903
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	1 cut(s)	272
HspAI	GCGC	1 cut(s)	927
Kzo9I	GATC	3 cut(s)	129, 344, 461
LmnI	GCTCC	2 cut(s)	235, 924
LpnPI	CCDG	8 cut(s)	131, 231, 246, 252, 303, 552, 852, 879
Lsp1109I	GCAGC	3 cut(s)	844, 866, 868
LweI	GCATC	1 cut(s)	640
MaeI	CTAG	1 cut(s)	30
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	3 cut(s)	141, 241, 251
MalI	GATC	3 cut(s)	131, 346, 463
MbiI	CCGCTC	1 cut(s)	203
MboI	GATC	3 cut(s)	129, 344, 461
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	4 cut(s)	294, 368, 402, 626
MlyI	GAGTC	1 cut(s)	743
MroXI	GAANNNNTTC	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	857
MspI	CCGG	1 cut(s)	539
MspR9I	CCNGG	2 cut(s)	539, 867
Mva1269I	GAATGC	1 cut(s)	808
MvaI	CCWGG	1 cut(s)	867
MwoI	GCNNNNNNNGC	5 cut(s)	65, 206, 532, 812, 924
NciI	CCSGG	1 cut(s)	539
NdeII	GATC	3 cut(s)	129, 344, 461
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	2 cut(s)	35, 223
NmuCI	GTSAC	2 cut(s)	241, 251
PceI	AGGCCT	1 cut(s)	28
PctI	GAATGC	1 cut(s)	808
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	6 cut(s)	94, 317, 380, 575, 656, 715
PkrI	GCNGC	5 cut(s)	70, 202, 856, 859, 883
PleI	GAGTC	1 cut(s)	742
PpsI	GAGTC	1 cut(s)	742
Psp6I	CCWGG	1 cut(s)	865
PspGI	CCWGG	1 cut(s)	865
PspN4I	GGNNCC	2 cut(s)	35, 223
PspPI	GGNCC	4 cut(s)	198, 221, 272, 618
PstNI	CAGNNNCTG	1 cut(s)	860
PvuII	CAGCTG	1 cut(s)	857
SatI	GCNGC	5 cut(s)	69, 201, 855, 858, 882
Sau3AI	GATC	3 cut(s)	129, 344, 461
Sau96I	GGNCC	4 cut(s)	198, 221, 272, 618
SchI	GAGTC	1 cut(s)	743
ScrFI	CCNGG	2 cut(s)	539, 867
SduI	GDGCHC	1 cut(s)	396
SetI	ASST	9 cut(s)	35, 61, 241, 358, 451, 567, 600, 842, 859
SfaNI	GCATC	1 cut(s)	640
Sse9I	AATT	4 cut(s)	294, 368, 402, 626
SseBI	AGGCCT	1 cut(s)	28
SsiI	CCGC	4 cut(s)	69, 77, 201, 743
SspMI	CTAG	1 cut(s)	30
StuI	AGGCCT	1 cut(s)	28
StyD4I	CCNGG	2 cut(s)	537, 865
StyI	CCWWGG	2 cut(s)	29, 930
TaaI	ACNGT	1 cut(s)	558
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	2 cut(s)	358, 875
TasI	AATT	4 cut(s)	294, 368, 402, 626
TauI	GCSGC	2 cut(s)	71, 203
TfiI	GAWTC	6 cut(s)	94, 317, 380, 575, 656, 715
TscAI	CASTG	3 cut(s)	250, 471, 555
TseFI	GTSAC	2 cut(s)	241, 251
TseI	GCWGC	3 cut(s)	854, 857, 881
Tsp45I	GTSAC	2 cut(s)	241, 251
TspDTI	ATGAA	4 cut(s)	100, 330, 381, 905
TspGWI	ACGGA	1 cut(s)	500
TspRI	CASTG	3 cut(s)	250, 471, 555
XmaJI	CCTAGG	1 cut(s)	29
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.