Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010158

Physical Location & Seq

Genomic Coordinates Reverse (-)

5018266 .. 5021265

Gene Structure 3000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G047100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAGTTTTTGGACGAGGACGCAAGGCCAAGGTTCCTCTTCCAATCGAAAGCAGTGGCTTCTTCAGCCACAGACCCAGAACCCCATTACAAGAATCTCAACAAACCATTCATTGCCTTTACAATATTACTCTCAATTCTATTACTGGGTCTCTCCTTCTTCTTCCTCCAATCCGAACCCTACCAATCTCTCCTCATCTGGGTTGCTCTCTCCATCCTCGTCGGCCCCTTCGCTCCCGCTTCAGTCACCGGTGGTGACATCAGCGTCGGTCACGGCCAAATCCTCGACCTCCCTGAAATCACAACCCAAGTAGAGGAGGAATCGAAGAAGAGGGTGTCTCAAAAGAGATCAAAGCCGCGTCGATTTGATGAATTGGGCACAGATTCGACACCGGTGGCCGAAACTGTTAATGGGCCTGTGAGAGAAGAGAAAAAGCGTGAGGTTTCCGAAGGTAATGGTAATGGGTCTATGGTGTTTGATGAAGAGACGGAGTGGGTTGAAGAGGATGTTGAGTTTTTGAAGAAACTGCTCTTGAAGTACCCGGTAGGGAAGCTGAGACGGTGGGAGGTTATTTCCGAGTCGTTTCGGGGAAAGCATAAGGTGGAGAGTGTGATCAAGAAGGCCAAAGAATTGGGAGAGAAGAAAGTGACTGATTCAGATTCTTATGCAGAGTTTTTGAAGAAGCGTAAGCCCAATGACAAGAAAATCGAGAGTGAGAGTCAAGACTTGGGTGATGAGTTGGTGGTGGAAAATGGTGAAGTGAAGAAAGAGAGCAATGGTGGTGGGGTGAGTTGGGCTTCAACTGAAGACATTGCATTGCTCAATGCCCTGAAGGCGTTTCCCAAGGATGTGTCGATGAGGTGGGAGAAGGTTGCAGCTGCTGTGCCTGGGAAGTCGAAGGCGGCTTGTATGAAGAGAGTTGCCGAGTTGAAGAAGGGTTTTCGGAGCTCCAAGGCTTCAACAGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016020 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040007 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060560 GO:0061649 GO:0065007 GO:0071695 GO:0071944 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140030 GO:0140035 GO:0140036 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

324

Amino Acids

36.06

Weight (kDa)

6.14

Isoelectric Point (pI)

58.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45420 AT5G45420 AT5G45420
fragaria_vesca	FvH4_5g21140
malus_domestica	MD06G1040800.v1.1 MD16G1268900.v1.1
prunus_persica	Prupe.5G047100_v2.0.a1 Prupe.5G047100_v2.0.a1
pyrus_communis	pycom06g03400 pycom16g23790
rosa_chinensis	RchiOBHm_Chr7g0208261
rosa_laevigata	RLG00000003234
rosa_multiflora	Rmu_sc0000841.1_g000022 Rmu_sc0007869.1_g000020
rosa_roxburghii	Rroxscaffold_3G00250630
rosa_rugosa	Rorug07G0102600
rosa_samantha	Rh7AG236800 Rh7BG232400 Rh7CG252700 Rh7DG242800
rosa_wichuraiana	Rw7G020210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AccII	CGCG	1 cut(s)	358
AciI	CCGC	3 cut(s)	237, 356, 902
AcoI	YGGCCR	2 cut(s)	274, 396
AcuI	CTGAAG	4 cut(s)	48, 225, 825, 851
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	2 cut(s)	199, 313
AgeI	ACCGGT	2 cut(s)	248, 391
AgsI	TTSAA	7 cut(s)	500, 520, 535, 679, 801, 931, 960
AjnI	CCWGG	1 cut(s)	886
AluBI	AGCT	3 cut(s)	553, 878, 948
AluI	AGCT	3 cut(s)	553, 878, 948
Alw21I	GWGCWC	1 cut(s)	950
Alw26I	GTCTC	4 cut(s)	155, 342, 479, 550
AlwNI	CAGNNNCTG	1 cut(s)	881
AoxI	GGCC	6 cut(s)	26, 223, 274, 396, 413, 621
ApeKI	GCWGC	2 cut(s)	875, 878
AsiGI	ACCGGT	2 cut(s)	248, 391
AspS9I	GGNCC	2 cut(s)	224, 413
AsuC2I	CCSGG	1 cut(s)	542
AsuHPI	GGTGA	5 cut(s)	238, 266, 743, 767, 799
BaeGI	GKGCMC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	950
BbsI	GAAGAC	1 cut(s)	813
Bbv12I	GWGCWC	1 cut(s)	950
BbvI	GCAGC	2 cut(s)	865, 887
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	1 cut(s)	289
BciT130I	CCWGG	1 cut(s)	888
BclI	TGATCA	1 cut(s)	612
BcnI	CCSGG	1 cut(s)	542
BcoDI	GTCTC	4 cut(s)	155, 342, 479, 550
BglI	GCCNNNNNGGC	1 cut(s)	833
BisI	GCNGC	4 cut(s)	356, 876, 879, 903
BlsI	GCNGC	4 cut(s)	357, 877, 880, 904
Bme1390I	CCNGG	2 cut(s)	542, 888
BmgT120I	GGNCC	2 cut(s)	224, 413
BmiI	GGNNCC	2 cut(s)	35, 226
BmrFI	CCNGG	2 cut(s)	542, 888
BmrI	ACTGGG	1 cut(s)	155
BmuI	ACTGGG	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	813
BplI	GAGNNNNNCTC	2 cut(s)	322, 354
BpuMI	CCSGG	1 cut(s)	542
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	4 cut(s)	29, 843, 887, 951
BsaWI	WCCGGW	2 cut(s)	248, 391
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 313
Bse118I	RCCGGY	2 cut(s)	248, 391
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	4 cut(s)	111, 781, 810, 815
BseBI	CCWGG	1 cut(s)	888
BseDI	CCNNGG	4 cut(s)	29, 843, 887, 951
BseGI	GGATG	3 cut(s)	213, 511, 853
BseLI	CCNNNNNNNGG	2 cut(s)	199, 313
BseMI	GCAATG	4 cut(s)	111, 781, 810, 815
BseMII	CTCAG	1 cut(s)	545
BseNI	ACTGG	1 cut(s)	150
BseRI	GAGGAG	2 cut(s)	182, 329
BseSI	GKGCMC	1 cut(s)	380
BseXI	GCAGC	2 cut(s)	865, 887
Bsh1236I	CGCG	1 cut(s)	358
BshFI	GGCC	6 cut(s)	28, 225, 276, 398, 415, 623
BshTI	ACCGGT	2 cut(s)	248, 391
BsiHKAI	GWGCWC	1 cut(s)	950
BsiSI	CCGG	3 cut(s)	249, 392, 542
BslI	CCNNNNNNNGG	2 cut(s)	199, 313
BsmAI	GTCTC	4 cut(s)	155, 342, 479, 550
BsmBI	CGTCTC	2 cut(s)	479, 550
BsnI	GGCC	6 cut(s)	28, 225, 276, 398, 415, 623
Bso31I	GGTCTC	1 cut(s)	155
Bsp1286I	GDGCHC	2 cut(s)	380, 950
Bsp143I	GATC	2 cut(s)	347, 612
BspACI	CCGC	3 cut(s)	237, 356, 902
BspANI	GGCC	6 cut(s)	28, 225, 276, 398, 415, 623
BspCNI	CTCAG	1 cut(s)	546
BspFNI	CGCG	1 cut(s)	358
BspLI	GGNNCC	2 cut(s)	35, 226
BspTNI	GGTCTC	1 cut(s)	155
BsrDI	GCAATG	4 cut(s)	111, 781, 810, 815
BsrFI	RCCGGY	2 cut(s)	248, 391
BsrI	ACTGG	1 cut(s)	150
BssAI	RCCGGY	2 cut(s)	248, 391
BssECI	CCNNGG	4 cut(s)	29, 843, 887, 951
BssMI	GATC	2 cut(s)	347, 612
BssT1I	CCWWGG	3 cut(s)	29, 843, 951
Bst2UI	CCWGG	1 cut(s)	888
Bst4CI	ACNGT	2 cut(s)	406, 561
Bst6I	CTCTTC	7 cut(s)	44, 323, 420, 477, 495, 908, 960
BstDEI	CTNAG	1 cut(s)	554
BstF5I	GGATG	3 cut(s)	213, 511, 853
BstFNI	CGCG	1 cut(s)	358
BstKTI	GATC	2 cut(s)	350, 615
BstMAI	GTCTC	4 cut(s)	155, 342, 479, 550
BstMBI	GATC	2 cut(s)	347, 612
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 833
BstNI	CCWGG	1 cut(s)	888
BstSCI	CCNGG	2 cut(s)	540, 886
BstSLI	GKGCMC	1 cut(s)	380
BstUI	CGCG	1 cut(s)	358
BstV1I	GCAGC	2 cut(s)	865, 887
BstV2I	GAAGAC	1 cut(s)	813
BstXI	CCANNNNNNTGG	1 cut(s)	631
BsuRI	GGCC	6 cut(s)	28, 225, 276, 398, 415, 623
BtsCI	GGATG	3 cut(s)	213, 511, 853
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	60
CaiI	CAGNNNCTG	1 cut(s)	881
Cfr10I	RCCGGY	2 cut(s)	248, 391
Cfr13I	GGNCC	2 cut(s)	224, 413
CseI	GACGC	3 cut(s)	29, 253, 347
Csp6I	GTAC	1 cut(s)	538
CspAI	ACCGGT	2 cut(s)	248, 391
CspCI	CAANNNNNGTGG	2 cut(s)	763, 798
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	1 cut(s)	554
DpnI	GATC	2 cut(s)	349, 614
DpnII	GATC	2 cut(s)	347, 612
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	2 cut(s)	274, 396
Eam1104I	CTCTTC	7 cut(s)	44, 323, 420, 477, 495, 908, 960
EarI	CTCTTC	7 cut(s)	44, 323, 420, 477, 495, 908, 960
Ecl136II	GAGCTC	1 cut(s)	948
Eco130I	CCWWGG	3 cut(s)	29, 843, 951
Eco24I	GRGCYC	1 cut(s)	950
Eco31I	GGTCTC	1 cut(s)	155
Eco53kI	GAGCTC	1 cut(s)	948
Eco57I	CTGAAG	4 cut(s)	48, 225, 825, 851
EcoICRI	GAGCTC	1 cut(s)	948
EcoRII	CCWGG	1 cut(s)	886
EcoT14I	CCWWGG	3 cut(s)	29, 843, 951
EcoT38I	GRGCYC	1 cut(s)	950
ErhI	CCWWGG	3 cut(s)	29, 843, 951
Esp3I	CGTCTC	2 cut(s)	479, 550
FaiI	YATR	4 cut(s)	470, 597, 666, 911
FauI	CCCGC	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	612
Fnu4HI	GCNGC	4 cut(s)	356, 876, 879, 903
FokI	GGATG	3 cut(s)	200, 518, 860
FriOI	GRGCYC	1 cut(s)	950
Fsp4HI	GCNGC	4 cut(s)	356, 876, 879, 903
GluI	GCNGC	4 cut(s)	356, 876, 879, 903
HaeIII	GGCC	6 cut(s)	28, 225, 276, 398, 415, 623
HapII	CCGG	3 cut(s)	249, 392, 542
HgaI	GACGC	3 cut(s)	29, 253, 347
HinfI	GANTC	7 cut(s)	94, 320, 383, 578, 653, 659, 718
HpaII	CCGG	3 cut(s)	249, 392, 542
HphI	GGTGA	5 cut(s)	238, 266, 743, 767, 799
Hpy188I	TCNGA	5 cut(s)	175, 448, 577, 658, 945
Hpy188III	TCNNGA	4 cut(s)	532, 616, 709, 722
Hpy99I	CGWCG	3 cut(s)	224, 269, 363
HpyAV	CCTTC	8 cut(s)	166, 238, 443, 613, 826, 862, 892, 928
HpyCH4III	ACNGT	2 cut(s)	406, 561
HpyCH4V	TGCA	3 cut(s)	668, 815, 875
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 833
HpyF3I	CTNAG	1 cut(s)	554
Ksp22I	TGATCA	1 cut(s)	612
Kzo9I	GATC	2 cut(s)	347, 612
LmnI	GCTCC	3 cut(s)	238, 945, 953
Lsp1109I	GCAGC	2 cut(s)	865, 887
MaeIII	GTNAC	4 cut(s)	244, 254, 269, 646
MalI	GATC	2 cut(s)	349, 614
MboI	GATC	2 cut(s)	347, 612
MhlI	GDGCHC	2 cut(s)	380, 950
MluCI	AATT	3 cut(s)	135, 371, 629
MlyI	GAGTC	2 cut(s)	587, 727
MseI	TTAA	1 cut(s)	408
MspA1I	CMGCKG	1 cut(s)	878
MspI	CCGG	3 cut(s)	249, 392, 542
MspR9I	CCNGG	2 cut(s)	542, 888
MvaI	CCWGG	1 cut(s)	888
MvnI	CGCG	1 cut(s)	358
MwoI	GCNNNNNNNGC	2 cut(s)	65, 833
NciI	CCSGG	1 cut(s)	542
NdeII	GATC	2 cut(s)	347, 612
NlaIV	GGNNCC	2 cut(s)	35, 226
NmeAIII	GCCGAG	1 cut(s)	949
NmuCI	GTSAC	4 cut(s)	244, 254, 269, 646
PfeI	GAWTC	5 cut(s)	94, 320, 383, 653, 659
PinAI	ACCGGT	2 cut(s)	248, 391
PkrI	GCNGC	4 cut(s)	357, 877, 880, 904
PleI	GAGTC	2 cut(s)	586, 726
PpsI	GAGTC	2 cut(s)	586, 726
Psp124BI	GAGCTC	1 cut(s)	950
Psp6I	CCWGG	1 cut(s)	886
PspGI	CCWGG	1 cut(s)	886
PspN4I	GGNNCC	2 cut(s)	35, 226
PspPI	GGNCC	2 cut(s)	224, 413
PstNI	CAGNNNCTG	1 cut(s)	881
PvuII	CAGCTG	1 cut(s)	878
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
SacI	GAGCTC	1 cut(s)	950
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	4 cut(s)	356, 876, 879, 903
Sau3AI	GATC	2 cut(s)	347, 612
Sau96I	GGNCC	2 cut(s)	224, 413
SchI	GAGTC	2 cut(s)	587, 727
ScrFI	CCNGG	2 cut(s)	542, 888
SduI	GDGCHC	2 cut(s)	380, 950
SgrAI	CRCCGGYG	2 cut(s)	248, 391
Sse9I	AATT	3 cut(s)	135, 371, 629
SsiI	CCGC	3 cut(s)	237, 356, 902
SspI	AATATT	1 cut(s)	126
SstI	GAGCTC	1 cut(s)	950
StyD4I	CCNGG	2 cut(s)	540, 886
StyI	CCWWGG	3 cut(s)	29, 843, 951
TaaI	ACNGT	2 cut(s)	406, 561
TaqI	TCGA	8 cut(s)	47, 285, 323, 361, 386, 708, 854, 896
TaqII	GACCGA	1 cut(s)	257
TasI	AATT	3 cut(s)	135, 371, 629
TauI	GCSGC	2 cut(s)	358, 905
TfiI	GAWTC	5 cut(s)	94, 320, 383, 653, 659
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	1 cut(s)	60
TseFI	GTSAC	4 cut(s)	244, 254, 269, 646
TseI	GCWGC	2 cut(s)	875, 878
Tsp45I	GTSAC	4 cut(s)	244, 254, 269, 646
TspDTI	ATGAA	4 cut(s)	100, 384, 495, 926
TspGWI	ACGGA	1 cut(s)	503
TspRI	CASTG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.