Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0010158

Physical Location & Seq

Genomic Coordinates Reverse (-)

8096025 .. 8096944

Gene Structure 920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0102600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAACATGATGATCAAAAGGAGTTGCAGCTTCTTCCTGGTCCTCCCTCCTTACAGAGGACAGCCCCTCGGCCGTCAGATCCTTCTTCACTACGATACCGATCAAAGGCAGCAGTTGAAGCCCTAGAAGCGCCCAACTCTCTCGACCTCCAACTGTCCATAAGTGTGAGACCACTGATGGGAGCAACCAACAATGTTTGCGAGTACGACCAAACGACGACGGGGTTGAAGCCGAAGGCGAGTTGCGTGGAGGCGCTGAAGTGGCAGGCGGCGGAGCAAATCCGAATGGCGGCAATGGAGAAGGCGTACGCGGAGAGAGTGAGGGAGCTGACGAGGAGGGAGATGGAGCTGGCTCAGTCGGAGTTCACACGTGCGAGGCACATCTGGGAGAGGGCGAGAGAGGAAGTGGAGAAGGCGGAGAGGATGAAGGAGAAGGCAATGCGCCAGATGGACGCCACGTGCATGGAGATCACTTGCCAGTCTTGCAGGCAAAGGTTTAGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016020 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040007 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060560 GO:0061649 GO:0065007 GO:0071695 GO:0071944 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140030 GO:0140035 GO:0140036 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

168

Amino Acids

19.35

Weight (kDa)

8.3

Isoelectric Point (pI)

54.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45420 AT5G45420 AT5G45420
fragaria_vesca	FvH4_5g21140
malus_domestica	MD06G1040800.v1.1 MD16G1268900.v1.1
prunus_persica	Prupe.5G047100_v2.0.a1 Prupe.5G047100_v2.0.a1
pyrus_communis	pycom06g03400 pycom16g23790
rosa_chinensis	RchiOBHm_Chr7g0208261
rosa_laevigata	RLG00000003234
rosa_multiflora	Rmu_sc0000841.1_g000022 Rmu_sc0007869.1_g000020
rosa_roxburghii	Rroxscaffold_3G00250630
rosa_rugosa	Rorug07G0102600
rosa_samantha	Rh7AG236800 Rh7BG232400 Rh7CG252700 Rh7DG242800
rosa_wichuraiana	Rw7G020210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	311
AciI	CCGC	5 cut(s)	269, 272, 290, 311, 416
AclWI	GGATC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	278
AcvI	CACGTG	2 cut(s)	371, 459
AcyI	GRCGYC	1 cut(s)	453
AfaI	GTAC	2 cut(s)	206, 308
AfiI	CCNNNNNNNGG	4 cut(s)	57, 106, 179, 289
AflIII	ACRYGT	1 cut(s)	368
AgsI	TTSAA	2 cut(s)	119, 229
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	3 cut(s)	31, 328, 349
AluI	AGCT	3 cut(s)	31, 328, 349
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	74
AoxI	GGCC	2 cut(s)	71, 500
ApeKI	GCWGC	2 cut(s)	28, 110
AspLEI	GCGC	3 cut(s)	133, 256, 444
AspS9I	GGNCC	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	41
BbrPI	CACGTG	2 cut(s)	371, 459
BbvI	GCAGC	2 cut(s)	40, 122
BccI	CCATC	3 cut(s)	172, 337, 442
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	39
BclI	TGATCA	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	125
BfoI	RGCGCY	2 cut(s)	134, 257
BisI	GCNGC	4 cut(s)	29, 111, 270, 291
BlsI	GCNGC	4 cut(s)	30, 112, 271, 292
Bme1390I	CCNGG	1 cut(s)	39
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	39
BsaAI	YACGTR	2 cut(s)	371, 459
BsaBI	GATNNNNATC	1 cut(s)	100
BsaHI	GRCGYC	1 cut(s)	453
BsaI	GGTCTC	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	68
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	4 cut(s)	57, 106, 179, 289
Bse1I	ACTGG	1 cut(s)	478
Bse3DI	GCAATG	2 cut(s)	300, 444
Bse8I	GATNNNNATC	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	1 cut(s)	429
BseJI	GATNNNNATC	1 cut(s)	100
BseLI	CCNNNNNNNGG	4 cut(s)	57, 106, 179, 289
BseMI	GCAATG	2 cut(s)	300, 444
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	1 cut(s)	349
BseX3I	CGGCCG	1 cut(s)	71
BseXI	GCAGC	2 cut(s)	40, 122
Bsh1236I	CGCG	1 cut(s)	311
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	2 cut(s)	73, 502
BsiEI	CGRYCG	1 cut(s)	74
BsiWI	CGTACG	1 cut(s)	306
BslI	CCNNNNNNNGG	4 cut(s)	57, 106, 179, 289
BsmAI	GTCTC	1 cut(s)	163
BsnI	GGCC	2 cut(s)	73, 502
Bso31I	GGTCTC	1 cut(s)	163
Bsp143I	GATC	4 cut(s)	13, 79, 101, 468
BspACI	CCGC	5 cut(s)	269, 272, 290, 311, 416
BspANI	GGCC	2 cut(s)	73, 502
BspCNI	CTCAG	1 cut(s)	367
BspFNI	CGCG	1 cut(s)	311
BspPI	GGATC	1 cut(s)	74
BspTNI	GGTCTC	1 cut(s)	163
BsrDI	GCAATG	2 cut(s)	300, 444
BsrI	ACTGG	1 cut(s)	478
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	4 cut(s)	13, 79, 101, 468
BssNI	GRCGYC	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	453
BstBAI	YACGTR	2 cut(s)	371, 459
BstC8I	GCNNGC	3 cut(s)	267, 351, 488
BstDEI	CTNAG	1 cut(s)	354
BstENI	CCTNNNNNAGG	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	429
BstFNI	CGCG	1 cut(s)	311
BstH2I	RGCGCY	2 cut(s)	134, 257
BstHHI	GCGC	3 cut(s)	133, 256, 444
BstKTI	GATC	4 cut(s)	16, 82, 104, 471
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	4 cut(s)	13, 79, 101, 468
BstMCI	CGRYCG	1 cut(s)	74
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 128, 262, 483
BstNI	CCWGG	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	37
BstUI	CGCG	1 cut(s)	311
BstV1I	GCAGC	2 cut(s)	40, 122
BstX2I	RGATCY	1 cut(s)	79
BstXI	CCANNNNNNTGG	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	79
BstZI	CGGCCG	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	73, 502
BtsCI	GGATG	1 cut(s)	429
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	3 cut(s)	267, 351, 488
CfoI	GCGC	3 cut(s)	133, 256, 444
Cfr13I	GGNCC	1 cut(s)	41
CseI	GACGC	1 cut(s)	461
Csp6I	GTAC	2 cut(s)	205, 307
CviAII	CATG	2 cut(s)	8, 463
CviJI	RGCY	9 cut(s)	31, 65, 73, 122, 232, 328, 349, 353, 502
CviKI_1	RGCY	9 cut(s)	31, 65, 73, 122, 232, 328, 349, 353, 502
CviQI	GTAC	2 cut(s)	205, 307
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	4 cut(s)	15, 81, 103, 470
DpnII	GATC	4 cut(s)	13, 79, 101, 468
EaeI	YGGCCR	1 cut(s)	71
EagI	CGGCCG	1 cut(s)	71
EciI	GGCGGA	2 cut(s)	287, 431
EclXI	CGGCCG	1 cut(s)	71
Eco147I	AGGCCT	1 cut(s)	502
Eco31I	GGTCTC	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	41
Eco52I	CGGCCG	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	278
Eco72I	CACGTG	2 cut(s)	371, 459
EcoNI	CCTNNNNNAGG	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	37
FaeI	CATG	2 cut(s)	11, 466
FaiI	YATR	3 cut(s)	9, 161, 464
FatI	CATG	2 cut(s)	7, 462
FbaI	TGATCA	1 cut(s)	13
Fnu4HI	GCNGC	4 cut(s)	29, 111, 270, 291
FokI	GGATG	1 cut(s)	436
Fsp4HI	GCNGC	4 cut(s)	29, 111, 270, 291
FspBI	CTAG	1 cut(s)	125
GlaI	GCGC	3 cut(s)	132, 255, 443
GluI	GCNGC	4 cut(s)	29, 111, 270, 291
HaeII	RGCGCY	2 cut(s)	134, 257
HaeIII	GGCC	2 cut(s)	73, 502
HgaI	GACGC	1 cut(s)	461
HhaI	GCGC	3 cut(s)	133, 256, 444
Hin1I	GRCGYC	1 cut(s)	453
Hin1II	CATG	2 cut(s)	11, 466
Hin6I	GCGC	3 cut(s)	131, 254, 442
HinP1I	GCGC	3 cut(s)	131, 254, 442
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188I	TCNGA	3 cut(s)	79, 284, 361
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	1 cut(s)	366
Hpy99I	CGWCG	2 cut(s)	220, 223
HpyAV	CCTTC	6 cut(s)	93, 229, 295, 406, 421, 427
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4IV	ACGT	2 cut(s)	370, 458
HpyCH4V	TGCA	3 cut(s)	28, 462, 486
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 128, 262, 483
HpyF3I	CTNAG	1 cut(s)	354
HpySE526I	ACGT	2 cut(s)	370, 458
Hsp92I	GRCGYC	1 cut(s)	453
Hsp92II	CATG	2 cut(s)	11, 466
HspAI	GCGC	3 cut(s)	131, 254, 442
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	4 cut(s)	13, 79, 101, 468
LmnI	GCTCC	4 cut(s)	182, 274, 325, 346
LpnPI	CCDG	8 cut(s)	24, 51, 251, 335, 370, 458, 472, 491
Lsp1109I	GCAGC	2 cut(s)	40, 122
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	2 cut(s)	370, 458
MalI	GATC	4 cut(s)	15, 81, 103, 470
MboI	GATC	4 cut(s)	13, 79, 101, 468
MboII	GAAGA	2 cut(s)	26, 78
MflI	RGATCY	1 cut(s)	79
MmeI	TCCRAC	2 cut(s)	175, 339
MslI	CAYNNNNRTG	2 cut(s)	164, 461
MspR9I	CCNGG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	39
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	4 cut(s)	119, 128, 262, 483
NdeII	GATC	4 cut(s)	13, 79, 101, 468
NlaIII	CATG	2 cut(s)	11, 466
NmeAIII	GCCGAG	1 cut(s)	49
PceI	AGGCCT	1 cut(s)	502
Pfl23II	CGTACG	1 cut(s)	306
PkrI	GCNGC	4 cut(s)	30, 112, 271, 292
PmaCI	CACGTG	2 cut(s)	371, 459
PmlI	CACGTG	2 cut(s)	371, 459
Ppu21I	YACGTR	2 cut(s)	371, 459
Psp6I	CCWGG	1 cut(s)	37
PspCI	CACGTG	2 cut(s)	371, 459
PspGI	CCWGG	1 cut(s)	37
PspLI	CGTACG	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	79
RsaI	GTAC	2 cut(s)	206, 308
RsaNI	GTAC	2 cut(s)	205, 307
RseI	CAYNNNNRTG	2 cut(s)	164, 461
SatI	GCNGC	4 cut(s)	29, 111, 270, 291
Sau3AI	GATC	4 cut(s)	13, 79, 101, 468
Sau96I	GGNCC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	39
SetI	ASST	7 cut(s)	33, 150, 330, 351, 373, 461, 497
SinI	GGWCC	1 cut(s)	41
SmiMI	CAYNNNNRTG	2 cut(s)	164, 461
SseBI	AGGCCT	1 cut(s)	502
SsiI	CCGC	5 cut(s)	269, 272, 290, 311, 416
SspMI	CTAG	1 cut(s)	125
StuI	AGGCCT	1 cut(s)	502
StyD4I	CCNGG	1 cut(s)	37
TaaI	ACNGT	1 cut(s)	156
TaiI	ACGT	2 cut(s)	373, 461
TaqI	TCGA	1 cut(s)	144
TauI	GCSGC	2 cut(s)	272, 293
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	2 cut(s)	28, 110
TspDTI	ATGAA	1 cut(s)	440
TspRI	CASTG	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	41
XagI	CCTNNNNNAGG	1 cut(s)	55
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.