Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010158

Physical Location & Seq

Genomic Coordinates Reverse (-)

45910646 .. 45911596

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003234

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAGTTTTTGGACGAGGACGCAAGGCCAAGGTTCCTCTTCCAATCCAAAGCAGTGACGTCATCGGCAACAGAGGCCGAGCCTCATTACAAGAATCTCAGCAAAACCCTGATCGCCTTCACTGTTTTACTCTCATTGGTTTTGCTGGGTCTCTCTTTCTTCTTTCTTGAATCGGAACCCTACAAATCGCTTCTCATCTGGGTCGCTCTGTCAATCCTCGTCGGCCCATTCGCTCCTCCATCGGTCACCGGCGGTGACATAAGGGTCGGTCAGGGCCCAATCGTCGAGTTCCCCGAGGTTTCAGGGGAGGTGGAAGATGAATCGAAGAAGAGGGTTTCGCAGAAGAGGCAAAAGCCGCGGCGGTTTGATGATTCCGGCGTGGAGTCTGCGCCGATGGCGGGAATGGGTAATGGGTATGTGAGGGAAGAGAGAAAGAGTGAGGCTTTGGGAGGCAGTGGCAATGGGGTTAGGGCTTTTGAGGAAGAGAGGGATTGGGTTGAGGAGGATGTGGAGATTTTGAAGAAGCAGCTGGTGAAGAACCCGGTGGGGAAGCCAAGGCGGTGGGAGGTGATTGCTGAAGCATTTGGAGGAAGGCATAAGGTGGAGAGTGTGATTAAGAAGGCCAAGGAATTGGGGGAGAAGAAGGTGAGTGATTCGGATTCATATGCTGAGTTTTTGAAGAAGAGGAAGCCCAATGAGAAGAAAATTGAGAGTGAGAGTCAGGAAAGAGGGGAGGAGAGCAATGCTGAAGGCAAGAGTGGTGGGGTTAGTTGGGCTGCTACTGAAGACATTGCATTGCTTAATGCATTGAAGGCGTTTCCGAAGGATGTGTCGATGAGGTGGGAGAAGATTGCAGCTGCTGTGCCGGGGAAGACAAAGGCGGCTTGTATGAAGAGAGTGGCTGAGTTGAAGAAGGGTTTTCGGAGCGCTAAGGCTGCTACGGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016020 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040007 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060560 GO:0061649 GO:0065007 GO:0071695 GO:0071944 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140030 GO:0140035 GO:0140036 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

317

Amino Acids

34.95

Weight (kDa)

8.37

Isoelectric Point (pI)

54.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding_2	PF23082	163 - 232	1.2e-33	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45420 AT5G45420 AT5G45420
fragaria_vesca	FvH4_5g21140
malus_domestica	MD06G1040800.v1.1 MD16G1268900.v1.1
prunus_persica	Prupe.5G047100_v2.0.a1 Prupe.5G047100_v2.0.a1
pyrus_communis	pycom06g03400 pycom16g23790
rosa_chinensis	RchiOBHm_Chr7g0208261
rosa_laevigata	RLG00000003234
rosa_multiflora	Rmu_sc0000841.1_g000022 Rmu_sc0007869.1_g000020
rosa_roxburghii	Rroxscaffold_3G00250630
rosa_rugosa	Rorug07G0102600
rosa_samantha	Rh7AG236800 Rh7BG232400 Rh7CG252700 Rh7DG242800
rosa_wichuraiana	Rw7G020210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AatII	GACGTC	1 cut(s)	62
AccII	CGCG	1 cut(s)	358
AciI	CCGC	7 cut(s)	252, 356, 358, 361, 398, 559, 881
AcuI	CTGAAG	3 cut(s)	597, 768, 804
AcyI	GRCGYC	1 cut(s)	59
AfeI	AGCGCT	1 cut(s)	928
AfiI	CCNNNNNNNGG	1 cut(s)	398
AgsI	TTSAA	5 cut(s)	170, 520, 679, 811, 910
AluBI	AGCT	2 cut(s)	529, 857
AluI	AGCT	2 cut(s)	529, 857
Alw26I	GTCTC	1 cut(s)	155
AlwNI	CAGNNNCTG	1 cut(s)	860
Ama87I	CYCGRG	1 cut(s)	293
Aor51HI	AGCGCT	1 cut(s)	928
AoxI	GGCC	5 cut(s)	26, 75, 223, 274, 621
ApaI	GGGCCC	1 cut(s)	278
ApeKI	GCWGC	5 cut(s)	526, 776, 854, 857, 935
ArsI	GACNNNNNNTTYG	2 cut(s)	815, 847
AspLEI	GCGC	2 cut(s)	391, 929
AspS9I	GGNCC	3 cut(s)	224, 274, 275
AsuC2I	CCSGG	2 cut(s)	542, 867
AsuHPI	GGTGA	5 cut(s)	238, 266, 544, 580, 658
AvaI	CYCGRG	1 cut(s)	293
BaeGI	GKGCMC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	278
BbsI	GAAGAC	2 cut(s)	792, 878
BbvI	GCAGC	5 cut(s)	538, 763, 844, 866, 922
BccI	CCATC	2 cut(s)	247, 388
BcnI	CCSGG	2 cut(s)	542, 867
BcoDI	GTCTC	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	930
BisI	GCNGC	8 cut(s)	356, 359, 527, 777, 855, 858, 882, 936
BlsI	GCNGC	8 cut(s)	357, 360, 528, 778, 856, 859, 883, 937
Bme1390I	CCNGG	2 cut(s)	542, 867
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	3 cut(s)	224, 274, 275
BmiI	GGNNCC	3 cut(s)	35, 177, 276
BmrFI	CCNGG	2 cut(s)	542, 867
BpiI	GAAGAC	2 cut(s)	792, 878
Bpu10I	CCTNAGC	1 cut(s)	930
BpuMI	CCSGG	2 cut(s)	542, 867
BsaHI	GRCGYC	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	6 cut(s)	29, 294, 356, 554, 624, 866
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
Bse118I	RCCGGY	1 cut(s)	248
Bse3DI	GCAATG	4 cut(s)	466, 748, 789, 794
BseDI	CCNNGG	6 cut(s)	29, 294, 356, 554, 624, 866
BseGI	GGATG	2 cut(s)	511, 832
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseMI	GCAATG	4 cut(s)	466, 748, 789, 794
BseMII	CTCAG	3 cut(s)	112, 660, 894
BseRI	GAGGAG	3 cut(s)	225, 515, 749
BseSI	GKGCMC	1 cut(s)	278
BseXI	GCAGC	5 cut(s)	538, 763, 844, 866, 922
BseYI	CCCAGC	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	358
BshFI	GGCC	5 cut(s)	28, 77, 225, 276, 623
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	4 cut(s)	249, 375, 542, 866
BslI	CCNNNNNNNGG	1 cut(s)	398
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	5 cut(s)	28, 77, 225, 276, 623
Bso31I	GGTCTC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	293
Bsp120I	GGGCCC	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	7 cut(s)	252, 356, 358, 361, 398, 559, 881
BspANI	GGCC	5 cut(s)	28, 77, 225, 276, 623
BspCNI	CTCAG	3 cut(s)	111, 661, 895
BspFNI	CGCG	1 cut(s)	358
BspLI	GGNNCC	3 cut(s)	35, 177, 276
BspTNI	GGTCTC	1 cut(s)	155
BsrDI	GCAATG	4 cut(s)	466, 748, 789, 794
BsrFI	RCCGGY	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	6 cut(s)	29, 294, 356, 554, 624, 866
BssMI	GATC	1 cut(s)	111
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	3 cut(s)	29, 554, 624
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	8 cut(s)	44, 323, 338, 420, 477, 677, 887, 939
BstACI	GRCGYC	1 cut(s)	59
BstDEI	CTNAG	4 cut(s)	98, 669, 903, 930
BstDSI	CCRYGG	1 cut(s)	356
BstEII	GGTNACC	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	511, 832
BstFNI	CGCG	1 cut(s)	358
BstH2I	RGCGCY	1 cut(s)	930
BstHHI	GCGC	2 cut(s)	391, 929
BstKTI	GATC	1 cut(s)	114
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 346, 355, 395, 812, 935
BstPI	GGTNACC	1 cut(s)	244
BstSCI	CCNGG	2 cut(s)	540, 865
BstSLI	GKGCMC	1 cut(s)	278
BstUI	CGCG	1 cut(s)	358
BstV1I	GCAGC	5 cut(s)	538, 763, 844, 866, 922
BstV2I	GAAGAC	2 cut(s)	792, 878
BstXI	CCANNNNNNTGG	2 cut(s)	561, 631
BsuRI	GGCC	5 cut(s)	28, 77, 225, 276, 623
BtgI	CCRYGG	1 cut(s)	356
BtsCI	GGATG	2 cut(s)	511, 832
BtsI	GCAGTG	2 cut(s)	60, 460
BtsIMutI	CAGTG	3 cut(s)	60, 120, 460
CaiI	CAGNNNCTG	1 cut(s)	860
CfoI	GCGC	2 cut(s)	391, 929
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	3 cut(s)	224, 274, 275
Cfr42I	CCGCGG	1 cut(s)	359
CseI	GACGC	1 cut(s)	29
CspCI	CAANNNNNGTGG	2 cut(s)	742, 777
DdeI	CTNAG	4 cut(s)	98, 669, 903, 930
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
Eam1104I	CTCTTC	8 cut(s)	44, 323, 338, 420, 477, 677, 887, 939
EarI	CTCTTC	8 cut(s)	44, 323, 338, 420, 477, 677, 887, 939
Eco130I	CCWWGG	3 cut(s)	29, 554, 624
Eco24I	GRGCYC	1 cut(s)	278
Eco31I	GGTCTC	1 cut(s)	155
Eco47III	AGCGCT	1 cut(s)	928
Eco57I	CTGAAG	3 cut(s)	597, 768, 804
Eco88I	CYCGRG	1 cut(s)	293
Eco91I	GGTNACC	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	244
EcoT14I	CCWWGG	3 cut(s)	29, 554, 624
EcoT22I	ATGCAT	1 cut(s)	808
EcoT38I	GRGCYC	1 cut(s)	278
ErhI	CCWWGG	3 cut(s)	29, 554, 624
FaiI	YATR	6 cut(s)	260, 417, 597, 664, 666, 890
FauI	CCCGC	1 cut(s)	391
FauNDI	CATATG	1 cut(s)	664
Fnu4HI	GCNGC	8 cut(s)	356, 359, 527, 777, 855, 858, 882, 936
FokI	GGATG	2 cut(s)	518, 839
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	8 cut(s)	356, 359, 527, 777, 855, 858, 882, 936
GlaI	GCGC	2 cut(s)	390, 928
GluI	GCNGC	8 cut(s)	356, 359, 527, 777, 855, 858, 882, 936
GsaI	CCCAGC	1 cut(s)	149
HaeII	RGCGCY	1 cut(s)	930
HaeIII	GGCC	5 cut(s)	28, 77, 225, 276, 623
HapII	CCGG	4 cut(s)	249, 375, 542, 866
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	2 cut(s)	391, 929
Hin1I	GRCGYC	1 cut(s)	59
Hin6I	GCGC	2 cut(s)	389, 927
HinP1I	GCGC	2 cut(s)	389, 927
HinfI	GANTC	8 cut(s)	94, 170, 320, 371, 383, 653, 659, 718
HpaII	CCGG	4 cut(s)	249, 375, 542, 866
HphI	GGTGA	5 cut(s)	238, 266, 544, 580, 658
Hpy188I	TCNGA	4 cut(s)	175, 658, 822, 924
Hpy188III	TCNNGA	2 cut(s)	167, 722
Hpy99I	CGWCG	2 cut(s)	224, 287
HpyAV	CCTTC	8 cut(s)	127, 585, 613, 637, 743, 805, 817, 907
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	794, 806, 854
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 346, 355, 395, 812, 935
HpyF3I	CTNAG	4 cut(s)	98, 669, 903, 930
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	1 cut(s)	59
HspAI	GCGC	2 cut(s)	389, 927
KspI	CCGCGG	1 cut(s)	359
Kzo9I	GATC	1 cut(s)	111
LmnI	GCTCC	2 cut(s)	238, 924
Lsp1109I	GCAGC	5 cut(s)	538, 763, 844, 866, 922
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	3 cut(s)	55, 244, 254
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	2 cut(s)	629, 705
MlyI	GAGTC	2 cut(s)	392, 727
Mph1103I	ATGCAT	1 cut(s)	808
MseI	TTAA	2 cut(s)	615, 801
MspA1I	CMGCKG	3 cut(s)	358, 529, 857
MspI	CCGG	4 cut(s)	249, 375, 542, 866
MspR9I	CCNGG	2 cut(s)	542, 867
MvnI	CGCG	1 cut(s)	358
MwoI	GCNNNNNNNGC	6 cut(s)	74, 346, 355, 395, 812, 935
NciI	CCSGG	2 cut(s)	542, 867
NdeI	CATATG	1 cut(s)	664
NdeII	GATC	1 cut(s)	111
NlaIV	GGNNCC	3 cut(s)	35, 177, 276
NmeAIII	GCCGAG	1 cut(s)	103
NmuCI	GTSAC	3 cut(s)	55, 244, 254
NsiI	ATGCAT	1 cut(s)	808
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PfeI	GAWTC	6 cut(s)	94, 170, 320, 371, 653, 659
PkrI	GCNGC	8 cut(s)	357, 360, 528, 778, 856, 859, 883, 937
PleI	GAGTC	2 cut(s)	391, 726
PpsI	GAGTC	2 cut(s)	391, 726
PspEI	GGTNACC	1 cut(s)	244
PspFI	CCCAGC	1 cut(s)	145
PspN4I	GGNNCC	3 cut(s)	35, 177, 276
PspOMI	GGGCCC	1 cut(s)	274
PspPI	GGNCC	3 cut(s)	224, 274, 275
PstNI	CAGNNNCTG	1 cut(s)	860
PvuII	CAGCTG	2 cut(s)	529, 857
SacII	CCGCGG	1 cut(s)	359
SaqAI	TTAA	2 cut(s)	615, 801
SatI	GCNGC	8 cut(s)	356, 359, 527, 777, 855, 858, 882, 936
Sau3AI	GATC	1 cut(s)	111
Sau96I	GGNCC	3 cut(s)	224, 274, 275
SchI	GAGTC	2 cut(s)	392, 727
ScrFI	CCNGG	2 cut(s)	542, 867
SduI	GDGCHC	1 cut(s)	278
Sfr303I	CCGCGG	1 cut(s)	359
SgrAI	CRCCGGYG	1 cut(s)	248
SgrBI	CCGCGG	1 cut(s)	359
Sse9I	AATT	2 cut(s)	629, 705
SsiI	CCGC	7 cut(s)	252, 356, 358, 361, 398, 559, 881
StyD4I	CCNGG	2 cut(s)	540, 865
StyI	CCWWGG	3 cut(s)	29, 554, 624
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	3 cut(s)	285, 323, 833
TaqII	GACCGA	2 cut(s)	232, 257
TasI	AATT	2 cut(s)	629, 705
TauI	GCSGC	3 cut(s)	358, 361, 884
TfiI	GAWTC	6 cut(s)	94, 170, 320, 371, 653, 659
Tru1I	TTAA	2 cut(s)	615, 801
Tru9I	TTAA	2 cut(s)	615, 801
TscAI	CASTG	3 cut(s)	60, 127, 460
TseFI	GTSAC	3 cut(s)	55, 244, 254
TseI	GCWGC	5 cut(s)	526, 776, 854, 857, 935
Tsp45I	GTSAC	3 cut(s)	55, 244, 254
TspDTI	ATGAA	3 cut(s)	333, 651, 905
TspRI	CASTG	3 cut(s)	60, 127, 460
ZraI	GACGTC	1 cut(s)	60
Zsp2I	ATGCAT	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.