Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010158

Physical Location & Seq

Genomic Coordinates Forward (+)

12700225 .. 12702229

Gene Structure 2005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g21140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGAGTTTCTGGACGAGGACGCAAGGCCAAGGTTCCTCTTCCAATCCAAAGCGGTGACGTCATCGGCTACAGAAACCGAGCCTCACTACAAGAATCTCAGCAAGCCCTGGATCGCCTTCACCGTTTTGGTCTCGTTGGTTTTACTGGGTCTCGCTTTCTTCTTCCTCCAATCCGAGCCCTACCAATCGCTGCTCATCTGGGTAGCGCTGTCAATCCTCGTCGGCCCATTCGCGCCGCCTTCGGTCACCGGCGGTGACGTAAGGGTCGGCCACGGCCCAGTCGTGGACTTCCCGGAGGTTCCGGCGGAGGTGGAGGATGAAGCGAAGAGGAGGCGGCAGAAGCCGCGGCGGTTTGAAGATCCTGGCGTGGATTTGGCCGGAAATGGTAATGGGTATGTGAGGGAGGAGAGAAAGGTGGAGGCTTTGGGAGGTGGAGGAAATGGGGTTAGGGTTTTGGAGGAGGAGAGGGATTGGGTTGAGGAGGATGTGGAGGTTTTGAAGAAGCAGCTGGTGAAGAACCCGGTGGGGAAACCGAGGCGGTGGGAGGTGATTGCTGAGGCGTTTGGGGGGAGGTATAAGGTGGAGAGTGTGATCAAGAAGGCGAAAGAGTTGGGGGAGAAGAAGGTGAGTGATTCGGATTCGTATGCCGAGTTTTTGAGGAAGAGGAAGCCTAATGAGAAGAAAATGGAGAGTGGGAGTGAGGAGGTTGGGGAGGAGGGCAATGCTGAGGGCAAGAGTGCTGGTGGTGGGGTTAGTTGGGGTGCTAGTGAGGACATTGCGTTGCTTAATGCGTTGAAGGCGTTTCCCAAGGAGGTGCCGATGAGGTGGGAGAAGATTGCAGCTGCTGTGCCGGGGAAGACCAAGGCGGCTTGTGTGAAGAGAGTGGCGGAGTTGAAGAAGGGCTTTCGGAGTGCTAAGGCTGCTACGGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016020 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040007 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060560 GO:0061649 GO:0065007 GO:0071695 GO:0071944 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140030 GO:0140035 GO:0140036 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

312

Amino Acids

34.25

Weight (kDa)

6.83

Isoelectric Point (pI)

52.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding_2	PF23082	156 - 225	3.8e-32	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45420 AT5G45420 AT5G45420
fragaria_vesca	FvH4_5g21140
malus_domestica	MD06G1040800.v1.1 MD16G1268900.v1.1
prunus_persica	Prupe.5G047100_v2.0.a1 Prupe.5G047100_v2.0.a1
pyrus_communis	pycom06g03400 pycom16g23790
rosa_chinensis	RchiOBHm_Chr7g0208261
rosa_laevigata	RLG00000003234
rosa_multiflora	Rmu_sc0000841.1_g000022 Rmu_sc0007869.1_g000020
rosa_roxburghii	Rroxscaffold_3G00250630
rosa_rugosa	Rorug07G0102600
rosa_samantha	Rh7AG236800 Rh7BG232400 Rh7CG252700 Rh7DG242800
rosa_wichuraiana	Rw7G020210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AatII	GACGTC	1 cut(s)	62
AccB1I	GGYRCC	1 cut(s)	814
AccII	CGCG	2 cut(s)	233, 346
AclWI	GGATC	2 cut(s)	119, 353
AcoI	YGGCCR	2 cut(s)	268, 375
AcyI	GRCGYC	1 cut(s)	59
AfeI	AGCGCT	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	4 cut(s)	356, 499, 796, 895
AjnI	CCWGG	2 cut(s)	107, 361
AluBI	AGCT	2 cut(s)	508, 842
AluI	AGCT	2 cut(s)	508, 842
Alw26I	GTCTC	2 cut(s)	136, 155
AlwI	GGATC	2 cut(s)	119, 353
AlwNI	CAGNNNCTG	1 cut(s)	845
Aor51HI	AGCGCT	1 cut(s)	207
AoxI	GGCC	5 cut(s)	26, 223, 268, 274, 375
ApeKI	GCWGC	5 cut(s)	190, 505, 839, 842, 920
AspLEI	GCGC	2 cut(s)	208, 235
AspS9I	GGNCC	2 cut(s)	224, 275
AsuC2I	CCSGG	3 cut(s)	293, 521, 852
AsuHPI	GGTGA	7 cut(s)	67, 112, 238, 266, 523, 559, 637
BanI	GGYRCC	1 cut(s)	814
BanII	GRGCYC	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	863
BbvCI	CCTCAGC	2 cut(s)	555, 726
BbvI	GCAGC	5 cut(s)	177, 517, 829, 851, 907
BceAI	ACGGC	1 cut(s)	289
BciT130I	CCWGG	2 cut(s)	109, 363
BclI	TGATCA	1 cut(s)	591
BcnI	CCSGG	3 cut(s)	293, 521, 852
BcoDI	GTCTC	2 cut(s)	136, 155
BfaI	CTAG	1 cut(s)	765
BfmI	CTRYAG	1 cut(s)	69
BfoI	RGCGCY	1 cut(s)	209
Bme1390I	CCNGG	5 cut(s)	109, 293, 363, 521, 852
BmgT120I	GGNCC	2 cut(s)	224, 275
BmiI	GGNNCC	3 cut(s)	35, 300, 816
BmrFI	CCNGG	5 cut(s)	109, 293, 363, 521, 852
BmrI	ACTGGG	2 cut(s)	155, 272
BmuI	ACTGGG	2 cut(s)	155, 272
BpiI	GAAGAC	1 cut(s)	863
Bpu10I	CCTNAGC	3 cut(s)	555, 726, 915
BpuMI	CCSGG	3 cut(s)	293, 521, 852
BsaHI	GRCGYC	1 cut(s)	59
BsaI	GGTCTC	2 cut(s)	136, 155
BsaJI	CCNNGG	8 cut(s)	29, 107, 271, 344, 533, 807, 851, 861
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	150, 278
Bse3DI	GCAATG	2 cut(s)	727, 774
BseBI	CCWGG	2 cut(s)	109, 363
BseDI	CCNNGG	8 cut(s)	29, 107, 271, 344, 533, 807, 851, 861
BseGI	GGATG	3 cut(s)	322, 490, 934
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMI	GCAATG	2 cut(s)	727, 774
BseMII	CTCAG	3 cut(s)	112, 546, 717
BseNI	ACTGG	2 cut(s)	150, 278
BseRI	GAGGAG	7 cut(s)	343, 419, 473, 476, 494, 716, 728
BseXI	GCAGC	5 cut(s)	177, 517, 829, 851, 907
Bsh1236I	CGCG	2 cut(s)	233, 346
BshFI	GGCC	5 cut(s)	28, 225, 270, 276, 377
BshNI	GGYRCC	1 cut(s)	814
BsiSI	CCGG	6 cut(s)	249, 293, 302, 378, 521, 851
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	2 cut(s)	136, 155
BsnI	GGCC	5 cut(s)	28, 225, 270, 276, 377
Bso31I	GGTCTC	2 cut(s)	136, 155
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	111, 358, 591
BspANI	GGCC	5 cut(s)	28, 225, 270, 276, 377
BspCNI	CTCAG	3 cut(s)	111, 547, 718
BspFNI	CGCG	2 cut(s)	233, 346
BspLI	GGNNCC	3 cut(s)	35, 300, 816
BspPI	GGATC	2 cut(s)	119, 353
BspT107I	GGYRCC	1 cut(s)	814
BspTNI	GGTCTC	2 cut(s)	136, 155
BsrDI	GCAATG	2 cut(s)	727, 774
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	2 cut(s)	150, 278
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	8 cut(s)	29, 107, 271, 344, 533, 807, 851, 861
BssMI	GATC	3 cut(s)	111, 358, 591
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	3 cut(s)	29, 807, 861
Bst2UI	CCWGG	2 cut(s)	109, 363
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	4 cut(s)	44, 320, 656, 872
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	104
BstDEI	CTNAG	4 cut(s)	98, 555, 726, 915
BstDSI	CCRYGG	2 cut(s)	271, 344
BstEII	GGTNACC	1 cut(s)	244
BstF5I	GGATG	3 cut(s)	322, 490, 934
BstFNI	CGCG	2 cut(s)	233, 346
BstH2I	RGCGCY	1 cut(s)	209
BstHHI	GCGC	2 cut(s)	208, 235
BstKTI	GATC	3 cut(s)	114, 361, 594
BstMAI	GTCTC	2 cut(s)	136, 155
BstMBI	GATC	3 cut(s)	111, 358, 591
BstMWI	GCNNNNNNNGC	4 cut(s)	340, 343, 797, 920
BstNI	CCWGG	2 cut(s)	109, 363
BstPI	GGTNACC	1 cut(s)	244
BstSCI	CCNGG	5 cut(s)	107, 291, 361, 519, 850
BstSFI	CTRYAG	1 cut(s)	69
BstUI	CGCG	2 cut(s)	233, 346
BstV1I	GCAGC	5 cut(s)	177, 517, 829, 851, 907
BstV2I	GAAGAC	1 cut(s)	863
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BsuRI	GGCC	5 cut(s)	28, 225, 270, 276, 377
BtgI	CCRYGG	2 cut(s)	271, 344
BtsCI	GGATG	3 cut(s)	322, 490, 934
Cac8I	GCNNGC	1 cut(s)	104
CaiI	CAGNNNCTG	1 cut(s)	845
CfoI	GCGC	2 cut(s)	208, 235
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	2 cut(s)	224, 275
Cfr42I	CCGCGG	1 cut(s)	347
CseI	GACGC	1 cut(s)	29
DdeI	CTNAG	4 cut(s)	98, 555, 726, 915
DpnI	GATC	3 cut(s)	113, 360, 593
DpnII	GATC	3 cut(s)	111, 358, 591
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	2 cut(s)	268, 375
Eam1104I	CTCTTC	4 cut(s)	44, 320, 656, 872
EarI	CTCTTC	4 cut(s)	44, 320, 656, 872
EciI	GGCGGA	2 cut(s)	320, 902
Eco130I	CCWWGG	3 cut(s)	29, 807, 861
Eco24I	GRGCYC	1 cut(s)	180
Eco31I	GGTCTC	2 cut(s)	136, 155
Eco47III	AGCGCT	1 cut(s)	207
Eco91I	GGTNACC	1 cut(s)	244
EcoO65I	GGTNACC	1 cut(s)	244
EcoRII	CCWGG	2 cut(s)	107, 361
EcoT14I	CCWWGG	3 cut(s)	29, 807, 861
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	3 cut(s)	29, 807, 861
FaiI	YATR	3 cut(s)	396, 576, 645
FalI	AAGNNNNNCTT	2 cut(s)	887, 919
FbaI	TGATCA	1 cut(s)	591
FokI	GGATG	2 cut(s)	329, 497
FriOI	GRGCYC	1 cut(s)	180
FspBI	CTAG	1 cut(s)	765
GlaI	GCGC	2 cut(s)	207, 234
HaeII	RGCGCY	1 cut(s)	209
HaeIII	GGCC	5 cut(s)	28, 225, 270, 276, 377
HapII	CCGG	6 cut(s)	249, 293, 302, 378, 521, 851
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	2 cut(s)	208, 235
Hin1I	GRCGYC	1 cut(s)	59
Hin6I	GCGC	2 cut(s)	206, 233
HinP1I	GCGC	2 cut(s)	206, 233
HinfI	GANTC	3 cut(s)	94, 632, 638
HpaII	CCGG	6 cut(s)	249, 293, 302, 378, 521, 851
HphI	GGTGA	7 cut(s)	67, 112, 238, 266, 523, 559, 637
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	3 cut(s)	175, 637, 909
Hpy188III	TCNNGA	2 cut(s)	11, 595
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	6 cut(s)	127, 249, 592, 616, 790, 892
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	2 cut(s)	59, 258
HpyCH4V	TGCA	1 cut(s)	839
HpyF10VI	GCNNNNNNNGC	4 cut(s)	340, 343, 797, 920
HpyF3I	CTNAG	4 cut(s)	98, 555, 726, 915
HpySE526I	ACGT	2 cut(s)	59, 258
Hsp92I	GRCGYC	1 cut(s)	59
HspAI	GCGC	2 cut(s)	206, 233
Ksp22I	TGATCA	1 cut(s)	591
KspI	CCGCGG	1 cut(s)	347
Kzo9I	GATC	3 cut(s)	111, 358, 591
Lsp1109I	GCAGC	5 cut(s)	177, 517, 829, 851, 907
MaeI	CTAG	1 cut(s)	765
MaeII	ACGT	2 cut(s)	59, 258
MaeIII	GTNAC	3 cut(s)	55, 244, 254
MalI	GATC	3 cut(s)	113, 360, 593
MboI	GATC	3 cut(s)	111, 358, 591
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	1 cut(s)	180
MseI	TTAA	1 cut(s)	786
MspA1I	CMGCKG	3 cut(s)	346, 508, 842
MspI	CCGG	6 cut(s)	249, 293, 302, 378, 521, 851
MspR9I	CCNGG	5 cut(s)	109, 293, 363, 521, 852
MvaI	CCWGG	2 cut(s)	109, 363
MvnI	CGCG	2 cut(s)	233, 346
MwoI	GCNNNNNNNGC	4 cut(s)	340, 343, 797, 920
NciI	CCSGG	3 cut(s)	293, 521, 852
NdeII	GATC	3 cut(s)	111, 358, 591
NlaIV	GGNNCC	3 cut(s)	35, 300, 816
NmeAIII	GCCGAG	1 cut(s)	673
NmuCI	GTSAC	3 cut(s)	55, 244, 254
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 279
PfeI	GAWTC	3 cut(s)	94, 632, 638
PfoI	TCCNGGA	1 cut(s)	291
Psp6I	CCWGG	2 cut(s)	107, 361
PspEI	GGTNACC	1 cut(s)	244
PspGI	CCWGG	2 cut(s)	107, 361
PspN4I	GGNNCC	3 cut(s)	35, 300, 816
PspPI	GGNCC	2 cut(s)	224, 275
PstNI	CAGNNNCTG	1 cut(s)	845
PsuI	RGATCY	1 cut(s)	358
PvuII	CAGCTG	2 cut(s)	508, 842
SacII	CCGCGG	1 cut(s)	347
SaqAI	TTAA	1 cut(s)	786
Sau3AI	GATC	3 cut(s)	111, 358, 591
Sau96I	GGNCC	2 cut(s)	224, 275
ScrFI	CCNGG	5 cut(s)	109, 293, 363, 521, 852
SduI	GDGCHC	1 cut(s)	180
SfcI	CTRYAG	1 cut(s)	69
Sfr303I	CCGCGG	1 cut(s)	347
SgrAI	CRCCGGYG	1 cut(s)	248
SgrBI	CCGCGG	1 cut(s)	347
SspMI	CTAG	1 cut(s)	765
StyD4I	CCNGG	5 cut(s)	107, 291, 361, 519, 850
StyI	CCWWGG	3 cut(s)	29, 807, 861
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	2 cut(s)	62, 261
TaqII	GACCGA	1 cut(s)	232
TauI	GCSGC	5 cut(s)	238, 337, 346, 349, 869
TfiI	GAWTC	3 cut(s)	94, 632, 638
Tru1I	TTAA	1 cut(s)	786
Tru9I	TTAA	1 cut(s)	786
TseFI	GTSAC	3 cut(s)	55, 244, 254
TseI	GCWGC	5 cut(s)	190, 505, 839, 842, 920
Tsp45I	GTSAC	3 cut(s)	55, 244, 254
TspDTI	ATGAA	1 cut(s)	333
XspI	CTAG	1 cut(s)	765
ZraI	GACGTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.