Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0010158

Physical Location & Seq

Genomic Coordinates Forward (+)

34628556 .. 34631122

Gene Structure 2567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1268900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGAGTTTTTGGATGAGGACGCAAGGCCAAGGTTCCTTTTCCAATCCAAAGCAGTAGCTTCTTCTGCTGCAAACCCACAACCCTATTACAAGAATCTCAGCAAACCATTCTTTTTTTTAACCGTCTTGATCTCATTTCTGTTACTGGGTCTTGCCTTCTTCTTCCTCCAAAATGAACCCTACCAATCTCTCCTCATTTGGGCCGCTCTCTCCCTCCTCATCAGCCAATTCGCTCCTGCACCCGTCACTGGTGGTGACATCCGGGTTGGTCACGGCCCAGTCATGGACTTTCCAGAAATTGCAACCCATGTAGAGGACGAATCGAAGAAGAGGGTGTCTCAAAATAGATCAAAACTGCGTTGGTTTGATGAATTGGGGACAGATTTGATGCCAGTGGCCAAAACTGTTAGTGGGTGTTTGAGAGAAGAGAAAAAGAGTGAGGCTTCCGAAGGTAATGGTAATGGATCAGTGGTTTTTGGTGAAGAGATGGAGTGGGTTGAGGAGGATGCTGAGTTTTTAAAGAAACTACTGTTGAAGCACCCCGTGGGGAAGCTGAGACGGTGGGAGGTTATCGCCGAGTCGTTTCAAGGAAGGCATAAGGTGGAGAGTGTGATCAAGAAGGCTAAAGAATTGGGAGAGAAGAAAGTGAGTGATTCAGATTCATATGCAGAGTTTTTGAAGAAGCGTAAGCCCAATGACAAGAAATTTGAAAGTGGGAATCTAGAGATGGGTGATGAGTTGATGGCGGAAAATGGTGAAGTGAAGAAAGAGAGTTGGGCTTCTACTGAAGACATTGCATTGCTCAATGCCCTGAAGGCATTTCCAAAGGAAGTGTCAATGAGGTGGGAGAAGATTGCAGCTGCTGTGCCCGGGAAGTCGAAGGCTGCTTGTATGAAGAGAGTTGCTGAGTTGAGGAAGGGTTTTCGGAGCGCCAAGGCTGCTAGCGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016020 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040007 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060560 GO:0061649 GO:0065007 GO:0071695 GO:0071944 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140030 GO:0140035 GO:0140036 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

318

Amino Acids

35.62

Weight (kDa)

7.68

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding_2	PF23082	164 - 233	1.1e-31	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45420 AT5G45420 AT5G45420
fragaria_vesca	FvH4_5g21140
malus_domestica	MD06G1040800.v1.1 MD16G1268900.v1.1
prunus_persica	Prupe.5G047100_v2.0.a1 Prupe.5G047100_v2.0.a1
pyrus_communis	pycom06g03400 pycom16g23790
rosa_chinensis	RchiOBHm_Chr7g0208261
rosa_laevigata	RLG00000003234
rosa_multiflora	Rmu_sc0000841.1_g000022 Rmu_sc0007869.1_g000020
rosa_roxburghii	Rroxscaffold_3G00250630
rosa_rugosa	Rorug07G0102600
rosa_samantha	Rh7AG236800 Rh7BG232400 Rh7CG252700 Rh7DG242800
rosa_wichuraiana	Rw7G020210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	206
AciI	CCGC	2 cut(s)	204, 746
AclWI	GGATC	1 cut(s)	472
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	1 cut(s)	704
AcuI	CTGAAG	2 cut(s)	807, 833
AdeI	CACNNNGTG	1 cut(s)	544
AfiI	CCNNNNNNNGG	4 cut(s)	199, 248, 283, 313
AgsI	TTSAA	4 cut(s)	535, 587, 679, 710
AluBI	AGCT	3 cut(s)	59, 553, 860
AluI	AGCT	3 cut(s)	59, 553, 860
Alw26I	GTCTC	2 cut(s)	342, 550
AlwI	GGATC	1 cut(s)	472
AlwNI	CAGNNNCTG	1 cut(s)	863
Ama87I	CYCGRG	1 cut(s)	869
AoxI	GGCC	4 cut(s)	26, 201, 274, 396
ApeKI	GCWGC	5 cut(s)	68, 857, 860, 884, 938
ApoI	RAATTY	1 cut(s)	704
ArsI	GACNNNNNNTTYG	4 cut(s)	689, 721, 818, 850
AspLEI	GCGC	1 cut(s)	932
AspS9I	GGNCC	2 cut(s)	201, 275
AsuC2I	CCSGG	3 cut(s)	263, 870, 871
AsuHPI	GGTGA	4 cut(s)	266, 491, 743, 767
AsuNHI	GCTAGC	1 cut(s)	941
AvaI	CYCGRG	1 cut(s)	869
BaeGI	GKGCMC	1 cut(s)	870
BalI	TGGCCA	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	795
BbvI	GCAGC	5 cut(s)	55, 847, 869, 871, 925
BccI	CCATC	3 cut(s)	481, 721, 736
BceAI	ACGGC	1 cut(s)	289
BclI	TGATCA	1 cut(s)	612
BcnI	CCSGG	3 cut(s)	263, 870, 871
BcoDI	GTCTC	2 cut(s)	342, 550
BfaI	CTAG	2 cut(s)	722, 942
BfoI	RGCGCY	1 cut(s)	933
BglI	GCCNNNNNGGC	1 cut(s)	815
BisI	GCNGC	6 cut(s)	69, 204, 858, 861, 885, 939
BlsI	GCNGC	6 cut(s)	70, 205, 859, 862, 886, 940
Bme1390I	CCNGG	3 cut(s)	263, 870, 871
BmeT110I	CYCGRG	1 cut(s)	869
BmgT120I	GGNCC	2 cut(s)	201, 275
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	3 cut(s)	263, 870, 871
BmrI	ACTGGG	2 cut(s)	155, 272
BmsI	GCATC	2 cut(s)	378, 496
BmtI	GCTAGC	1 cut(s)	945
BmuI	ACTGGG	2 cut(s)	155, 272
BpiI	GAAGAC	1 cut(s)	795
BplI	GAGNNNNNCTC	2 cut(s)	322, 354
BpuMI	CCSGG	3 cut(s)	263, 870, 871
BsaJI	CCNNGG	4 cut(s)	29, 543, 869, 933
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 248, 283, 313
Bse1I	ACTGG	4 cut(s)	150, 253, 278, 392
Bse3DI	GCAATG	2 cut(s)	792, 797
BseDI	CCNNGG	4 cut(s)	29, 543, 869, 933
BseGI	GGATG	3 cut(s)	19, 258, 511
BseLI	CCNNNNNNNGG	4 cut(s)	199, 248, 283, 313
BseMI	GCAATG	2 cut(s)	792, 797
BseMII	CTCAG	4 cut(s)	112, 501, 545, 897
BseNI	ACTGG	4 cut(s)	150, 253, 278, 392
BseRI	GAGGAG	3 cut(s)	182, 206, 515
BseSI	GKGCMC	1 cut(s)	870
BseXI	GCAGC	5 cut(s)	55, 847, 869, 871, 925
BsgI	GTGCAG	1 cut(s)	222
BshFI	GGCC	4 cut(s)	28, 203, 276, 398
BsiHKCI	CYCGRG	1 cut(s)	869
BsiSI	CCGG	2 cut(s)	262, 870
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	4 cut(s)	199, 248, 283, 313
BsmAI	GTCTC	2 cut(s)	342, 550
BsmBI	CGTCTC	1 cut(s)	550
BsmFI	GGGAC	1 cut(s)	391
BsnI	GGCC	4 cut(s)	28, 203, 276, 398
BsoBI	CYCGRG	1 cut(s)	869
Bsp1286I	GDGCHC	1 cut(s)	870
Bsp143I	GATC	4 cut(s)	129, 347, 464, 612
BspACI	CCGC	2 cut(s)	204, 746
BspANI	GGCC	4 cut(s)	28, 203, 276, 398
BspCNI	CTCAG	4 cut(s)	111, 502, 546, 898
BspLI	GGNNCC	1 cut(s)	35
BspOI	GCTAGC	1 cut(s)	945
BspPI	GGATC	1 cut(s)	472
BsrBI	CCGCTC	1 cut(s)	206
BsrDI	GCAATG	2 cut(s)	792, 797
BsrI	ACTGG	4 cut(s)	150, 253, 278, 392
BssECI	CCNNGG	4 cut(s)	29, 543, 869, 933
BssMI	GATC	4 cut(s)	129, 347, 464, 612
BssT1I	CCWWGG	2 cut(s)	29, 933
Bst4CI	ACNGT	4 cut(s)	124, 406, 531, 561
Bst6I	CTCTTC	5 cut(s)	323, 420, 477, 890, 942
BstC8I	GCNNGC	1 cut(s)	943
BstDEI	CTNAG	4 cut(s)	98, 510, 554, 906
BstDSI	CCRYGG	1 cut(s)	543
BstF5I	GGATG	3 cut(s)	19, 258, 511
BstH2I	RGCGCY	1 cut(s)	933
BstHHI	GCGC	1 cut(s)	932
BstKTI	GATC	4 cut(s)	132, 350, 467, 615
BstMAI	GTCTC	2 cut(s)	342, 550
BstMBI	GATC	4 cut(s)	129, 347, 464, 612
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 815, 938
BstSCI	CCNGG	3 cut(s)	261, 868, 869
BstSLI	GKGCMC	1 cut(s)	870
BstV1I	GCAGC	5 cut(s)	55, 847, 869, 871, 925
BstV2I	GAAGAC	1 cut(s)	795
BsuRI	GGCC	4 cut(s)	28, 203, 276, 398
BtgI	CCRYGG	1 cut(s)	543
BtsCI	GGATG	3 cut(s)	19, 258, 511
BtsIMutI	CAGTG	3 cut(s)	246, 399, 474
Cac8I	GCNNGC	1 cut(s)	943
CaiI	CAGNNNCTG	1 cut(s)	863
CfoI	GCGC	1 cut(s)	932
Cfr13I	GGNCC	2 cut(s)	201, 275
Cfr9I	CCCGGG	1 cut(s)	869
CseI	GACGC	1 cut(s)	29
CviAII	CATG	2 cut(s)	283, 308
DdeI	CTNAG	4 cut(s)	98, 510, 554, 906
DpnI	GATC	4 cut(s)	131, 349, 466, 614
DpnII	GATC	4 cut(s)	129, 347, 464, 612
DraI	TTTAAA	1 cut(s)	519
DraIII	CACNNNGTG	1 cut(s)	544
EaeI	YGGCCR	1 cut(s)	396
Eam1104I	CTCTTC	5 cut(s)	323, 420, 477, 890, 942
EarI	CTCTTC	5 cut(s)	323, 420, 477, 890, 942
EciI	GGCGGA	1 cut(s)	761
Eco130I	CCWWGG	2 cut(s)	29, 933
Eco57I	CTGAAG	2 cut(s)	807, 833
Eco88I	CYCGRG	1 cut(s)	869
EcoT14I	CCWWGG	2 cut(s)	29, 933
ErhI	CCWWGG	2 cut(s)	29, 933
Esp3I	CGTCTC	1 cut(s)	550
FaeI	CATG	2 cut(s)	286, 311
FaiI	YATR	6 cut(s)	284, 309, 597, 664, 666, 893
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	2 cut(s)	282, 307
FauNDI	CATATG	1 cut(s)	664
FbaI	TGATCA	1 cut(s)	612
Fnu4HI	GCNGC	6 cut(s)	69, 204, 858, 861, 885, 939
FokI	GGATG	3 cut(s)	26, 245, 518
Fsp4HI	GCNGC	6 cut(s)	69, 204, 858, 861, 885, 939
FspBI	CTAG	2 cut(s)	722, 942
GlaI	GCGC	1 cut(s)	931
GluI	GCNGC	6 cut(s)	69, 204, 858, 861, 885, 939
HaeII	RGCGCY	1 cut(s)	933
HaeIII	GGCC	4 cut(s)	28, 203, 276, 398
HapII	CCGG	2 cut(s)	262, 870
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	1 cut(s)	932
Hin1II	CATG	2 cut(s)	286, 311
Hin6I	GCGC	1 cut(s)	930
HinP1I	GCGC	1 cut(s)	930
HinfI	GANTC	6 cut(s)	94, 320, 578, 653, 659, 718
HpaII	CCGG	2 cut(s)	262, 870
HphI	GGTGA	4 cut(s)	266, 491, 743, 767
Hpy188I	TCNGA	3 cut(s)	448, 658, 927
Hpy188III	TCNNGA	4 cut(s)	127, 293, 616, 722
HpyAV	CCTTC	7 cut(s)	166, 443, 585, 613, 808, 874, 910
HpyCH4III	ACNGT	4 cut(s)	124, 406, 531, 561
HpyCH4V	TGCA	6 cut(s)	71, 239, 302, 668, 797, 857
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 815, 938
HpyF3I	CTNAG	4 cut(s)	98, 510, 554, 906
Hsp92II	CATG	2 cut(s)	286, 311
HspAI	GCGC	1 cut(s)	930
Ksp22I	TGATCA	1 cut(s)	612
Kzo9I	GATC	4 cut(s)	129, 347, 464, 612
LmnI	GCTCC	2 cut(s)	238, 927
LpnPI	CCDG	9 cut(s)	131, 234, 249, 275, 291, 306, 405, 824, 883
Lsp1109I	GCAGC	5 cut(s)	55, 847, 869, 871, 925
LweI	GCATC	2 cut(s)	378, 496
MaeI	CTAG	2 cut(s)	722, 942
MaeIII	GTNAC	4 cut(s)	141, 244, 254, 269
MalI	GATC	4 cut(s)	131, 349, 466, 614
MbiI	CCGCTC	1 cut(s)	206
MboI	GATC	4 cut(s)	129, 347, 464, 612
MhlI	GDGCHC	1 cut(s)	870
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	5 cut(s)	227, 297, 371, 629, 704
MluNI	TGGCCA	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	587
Mox20I	TGGCCA	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	2 cut(s)	119, 518
Msp20I	TGGCCA	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	860
MspI	CCGG	2 cut(s)	262, 870
MspR9I	CCNGG	3 cut(s)	263, 870, 871
MwoI	GCNNNNNNNGC	3 cut(s)	65, 815, 938
NciI	CCSGG	3 cut(s)	263, 870, 871
NdeI	CATATG	1 cut(s)	664
NdeII	GATC	4 cut(s)	129, 347, 464, 612
NheI	GCTAGC	1 cut(s)	941
NlaIII	CATG	2 cut(s)	286, 311
NlaIV	GGNNCC	1 cut(s)	35
NmeAIII	GCCGAG	1 cut(s)	601
NmuCI	GTSAC	3 cut(s)	244, 254, 269
PfeI	GAWTC	5 cut(s)	94, 320, 653, 659, 718
PkrI	GCNGC	6 cut(s)	70, 205, 859, 862, 886, 940
PleI	GAGTC	1 cut(s)	586
PpsI	GAGTC	1 cut(s)	586
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	2 cut(s)	201, 275
PstNI	CAGNNNCTG	1 cut(s)	863
PvuII	CAGCTG	1 cut(s)	860
SaqAI	TTAA	2 cut(s)	119, 518
SatI	GCNGC	6 cut(s)	69, 204, 858, 861, 885, 939
Sau3AI	GATC	4 cut(s)	129, 347, 464, 612
Sau96I	GGNCC	2 cut(s)	201, 275
SchI	GAGTC	1 cut(s)	587
ScrFI	CCNGG	3 cut(s)	263, 870, 871
SduI	GDGCHC	1 cut(s)	870
SetI	ASST	8 cut(s)	35, 61, 454, 555, 570, 603, 845, 862
SfaNI	GCATC	2 cut(s)	378, 496
SmaI	CCCGGG	1 cut(s)	871
Sse9I	AATT	5 cut(s)	227, 297, 371, 629, 704
SsiI	CCGC	2 cut(s)	204, 746
SspMI	CTAG	2 cut(s)	722, 942
StyD4I	CCNGG	3 cut(s)	261, 868, 869
StyI	CCWWGG	2 cut(s)	29, 933
TaaI	ACNGT	4 cut(s)	124, 406, 531, 561
TaqI	TCGA	2 cut(s)	323, 878
TasI	AATT	5 cut(s)	227, 297, 371, 629, 704
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	5 cut(s)	94, 320, 653, 659, 718
Tru1I	TTAA	2 cut(s)	119, 518
Tru9I	TTAA	2 cut(s)	119, 518
TscAI	CASTG	3 cut(s)	253, 399, 474
TseFI	GTSAC	3 cut(s)	244, 254, 269
TseI	GCWGC	5 cut(s)	68, 857, 860, 884, 938
Tsp45I	GTSAC	3 cut(s)	244, 254, 269
TspDTI	ATGAA	4 cut(s)	189, 384, 651, 908
TspMI	CCCGGG	1 cut(s)	869
TspRI	CASTG	3 cut(s)	253, 399, 474
XapI	RAATTY	1 cut(s)	704
XbaI	TCTAGA	1 cut(s)	721
XmaI	CCCGGG	1 cut(s)	869
XspI	CTAG	2 cut(s)	722, 942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.