Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010158

Physical Location & Seq

Genomic Coordinates Reverse (-)

44435634 .. 44436584

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00250630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAGTTTTTGGACGAGGACGCAAGGCCAAGGTTCCTCTTCCAATCCAAAGCAGTGACGTCTTCGGCAACAGAAGCTGAGCCTCATTACAAGAATCTCAGCAAGCCCTTGATCGCCTTCACTGTTTTACTCTCATTCGTTTTACTGGGTCTCTCTTTCTTCTTTCTTGAATCGGAACCCTACAAATCGCTTCTCATCTGGGTCGCTCTGTCAATCCTCGTCGGCCCATTCGCTCCTCCTTCGGTCACCGGCGGTGACATAAGGGTCGGTCAGGGCCCAATCGTCGAGTTCCCCGAGGTTTCAGGGGAGGTGGAAGATGAATCGAAGAAGAGGGTTTCGCAGAAGAGGCAAAAGCCGCGGCGGTTTGATGATTCCGGCGTGGAGTCGGCGCCGGTGGCCGGAATGGGTAATGGGTATGTGAGGGAAGAGAGAAAGAGTGAGGCTTTGGGAGGTAGTGGCAATGGGGTTAGGGCTTTTGAGGAGGAGAGGGATTGGGTTGAGGAGGATGTGGAGATTTTGAAGAAGCAGCTGGTGAAGAACCCGGTGGGGAAGCCGAGGCGGTGGGAGGTGATTGCTGAAGCATTTGGGGGAAGGCATAAGGTGGAGAGTGTGATCAAGAAGGCCAAGGAATTGGGGGAGAAGAAGGTGTGTGATTCGGATTCGTATGCCGAGTTTCTGAAGAAGAGGAAGCCCAATGAGAAGAAAATTGAGAGTGAGAGTCGGGAAATGGGGGAGGAGAGCAATGCTGAAGGCAAGAGTGGTGGGGTTAGTTGGGCTGCTACTGAAGACATTGCATTGCTTAATGCATTGAAGGCGTTTCCGAAGGATGTGTCGATGAGGTGGGAGAAGATTGCAGCTGCTGTGCCGGGGAAGACAAAGGCGGCTTGTATTAAGAGAGTGGCTGAGTTGAAGAAGGGTTTTCGGAGCGCCAAGGCTGCTACGGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016020 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040007 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060560 GO:0061649 GO:0065007 GO:0071695 GO:0071944 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140030 GO:0140035 GO:0140036 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

316

Amino Acids

34.95

Weight (kDa)

8.29

Isoelectric Point (pI)

53.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding_2	PF23082	163 - 232	3.3e-33	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45420 AT5G45420 AT5G45420
fragaria_vesca	FvH4_5g21140
malus_domestica	MD06G1040800.v1.1 MD16G1268900.v1.1
prunus_persica	Prupe.5G047100_v2.0.a1 Prupe.5G047100_v2.0.a1
pyrus_communis	pycom06g03400 pycom16g23790
rosa_chinensis	RchiOBHm_Chr7g0208261
rosa_laevigata	RLG00000003234
rosa_multiflora	Rmu_sc0000841.1_g000022 Rmu_sc0007869.1_g000020
rosa_roxburghii	Rroxscaffold_3G00250630
rosa_rugosa	Rorug07G0102600
rosa_samantha	Rh7AG236800 Rh7BG232400 Rh7CG252700 Rh7DG242800
rosa_wichuraiana	Rw7G020210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AatII	GACGTC	1 cut(s)	62
AccB1I	GGYRCC	1 cut(s)	388
AccII	CGCG	1 cut(s)	358
AciI	CCGC	6 cut(s)	252, 356, 358, 361, 559, 881
AcoI	YGGCCR	1 cut(s)	396
AcuI	CTGAAG	4 cut(s)	597, 698, 768, 804
AcyI	GRCGYC	2 cut(s)	59, 389
AfiI	CCNNNNNNNGG	1 cut(s)	398
AgsI	TTSAA	4 cut(s)	170, 520, 811, 910
AluBI	AGCT	3 cut(s)	77, 529, 857
AluI	AGCT	3 cut(s)	77, 529, 857
Alw26I	GTCTC	1 cut(s)	155
AlwNI	CAGNNNCTG	2 cut(s)	77, 860
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	5 cut(s)	26, 223, 274, 396, 621
ApaI	GGGCCC	1 cut(s)	278
ApeKI	GCWGC	5 cut(s)	526, 776, 854, 857, 935
ArsI	GACNNNNNNTTYG	2 cut(s)	815, 847
AspLEI	GCGC	2 cut(s)	391, 929
AspS9I	GGNCC	3 cut(s)	224, 274, 275
AsuC2I	CCSGG	2 cut(s)	542, 867
AsuHPI	GGTGA	4 cut(s)	238, 266, 544, 580
AvaI	CYCGRG	1 cut(s)	293
BaeGI	GKGCMC	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	388
BanII	GRGCYC	1 cut(s)	278
BbsI	GAAGAC	3 cut(s)	54, 792, 878
BbvI	GCAGC	5 cut(s)	538, 763, 844, 866, 922
BclI	TGATCA	1 cut(s)	612
BcnI	CCSGG	2 cut(s)	542, 867
BcoDI	GTCTC	1 cut(s)	155
BfoI	RGCGCY	2 cut(s)	392, 930
BisI	GCNGC	8 cut(s)	356, 359, 527, 777, 855, 858, 882, 936
BlpI	GCTNAGC	1 cut(s)	78
BlsI	GCNGC	8 cut(s)	357, 360, 528, 778, 856, 859, 883, 937
Bme1390I	CCNGG	2 cut(s)	542, 867
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	3 cut(s)	224, 274, 275
BmiI	GGNNCC	4 cut(s)	35, 177, 276, 390
BmrFI	CCNGG	2 cut(s)	542, 867
BmrI	ACTGGG	1 cut(s)	155
BmuI	ACTGGG	1 cut(s)	155
BpiI	GAAGAC	3 cut(s)	54, 792, 878
Bpu1102I	GCTNAGC	1 cut(s)	78
BpuMI	CCSGG	2 cut(s)	542, 867
BsaHI	GRCGYC	2 cut(s)	59, 389
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	7 cut(s)	29, 294, 356, 554, 624, 866, 930
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
Bse118I	RCCGGY	2 cut(s)	248, 391
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	4 cut(s)	466, 748, 789, 794
BseDI	CCNNGG	7 cut(s)	29, 294, 356, 554, 624, 866, 930
BseGI	GGATG	2 cut(s)	511, 832
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseMI	GCAATG	4 cut(s)	466, 748, 789, 794
BseMII	CTCAG	3 cut(s)	69, 112, 894
BseNI	ACTGG	1 cut(s)	150
BseRI	GAGGAG	5 cut(s)	225, 494, 497, 515, 749
BseSI	GKGCMC	1 cut(s)	278
BseXI	GCAGC	5 cut(s)	538, 763, 844, 866, 922
Bsh1236I	CGCG	1 cut(s)	358
BshFI	GGCC	5 cut(s)	28, 225, 276, 398, 623
BshNI	GGYRCC	1 cut(s)	388
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	6 cut(s)	249, 375, 392, 399, 542, 866
BslI	CCNNNNNNNGG	1 cut(s)	398
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	5 cut(s)	28, 225, 276, 398, 623
Bso31I	GGTCTC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	293
Bsp120I	GGGCCC	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	2 cut(s)	111, 612
Bsp1720I	GCTNAGC	1 cut(s)	78
BspACI	CCGC	6 cut(s)	252, 356, 358, 361, 559, 881
BspANI	GGCC	5 cut(s)	28, 225, 276, 398, 623
BspCNI	CTCAG	3 cut(s)	70, 111, 895
BspFNI	CGCG	1 cut(s)	358
BspLI	GGNNCC	4 cut(s)	35, 177, 276, 390
BspT107I	GGYRCC	1 cut(s)	388
BspTNI	GGTCTC	1 cut(s)	155
BsrDI	GCAATG	4 cut(s)	466, 748, 789, 794
BsrFI	RCCGGY	2 cut(s)	248, 391
BsrI	ACTGG	1 cut(s)	150
BssAI	RCCGGY	2 cut(s)	248, 391
BssECI	CCNNGG	7 cut(s)	29, 294, 356, 554, 624, 866, 930
BssMI	GATC	2 cut(s)	111, 612
BssNI	GRCGYC	2 cut(s)	59, 389
BssT1I	CCWWGG	3 cut(s)	29, 624, 930
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	6 cut(s)	44, 323, 338, 420, 677, 939
BstACI	GRCGYC	2 cut(s)	59, 389
BstC8I	GCNNGC	1 cut(s)	104
BstDEI	CTNAG	3 cut(s)	78, 98, 903
BstDSI	CCRYGG	1 cut(s)	356
BstEII	GGTNACC	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	511, 832
BstFNI	CGCG	1 cut(s)	358
BstH2I	RGCGCY	2 cut(s)	392, 930
BstHHI	GCGC	2 cut(s)	391, 929
BstKTI	GATC	2 cut(s)	114, 615
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	2 cut(s)	111, 612
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 346, 355, 395, 812, 935
BstPI	GGTNACC	1 cut(s)	244
BstSCI	CCNGG	2 cut(s)	540, 865
BstSLI	GKGCMC	1 cut(s)	278
BstUI	CGCG	1 cut(s)	358
BstV1I	GCAGC	5 cut(s)	538, 763, 844, 866, 922
BstV2I	GAAGAC	3 cut(s)	54, 792, 878
BstXI	CCANNNNNNTGG	1 cut(s)	631
BsuRI	GGCC	5 cut(s)	28, 225, 276, 398, 623
BtgI	CCRYGG	1 cut(s)	356
BtsCI	GGATG	2 cut(s)	511, 832
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	60, 120
Cac8I	GCNNGC	1 cut(s)	104
CaiI	CAGNNNCTG	2 cut(s)	77, 860
CfoI	GCGC	2 cut(s)	391, 929
Cfr10I	RCCGGY	2 cut(s)	248, 391
Cfr13I	GGNCC	3 cut(s)	224, 274, 275
Cfr42I	CCGCGG	1 cut(s)	359
CseI	GACGC	1 cut(s)	29
CspCI	CAANNNNNGTGG	2 cut(s)	742, 777
DdeI	CTNAG	3 cut(s)	78, 98, 903
DinI	GGCGCC	1 cut(s)	390
DpnI	GATC	2 cut(s)	113, 614
DpnII	GATC	2 cut(s)	111, 612
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	1 cut(s)	396
Eam1104I	CTCTTC	6 cut(s)	44, 323, 338, 420, 677, 939
EarI	CTCTTC	6 cut(s)	44, 323, 338, 420, 677, 939
Eco130I	CCWWGG	3 cut(s)	29, 624, 930
Eco24I	GRGCYC	1 cut(s)	278
Eco31I	GGTCTC	1 cut(s)	155
Eco57I	CTGAAG	4 cut(s)	597, 698, 768, 804
Eco88I	CYCGRG	1 cut(s)	293
Eco91I	GGTNACC	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	244
EcoT14I	CCWWGG	3 cut(s)	29, 624, 930
EcoT22I	ATGCAT	1 cut(s)	808
EcoT38I	GRGCYC	1 cut(s)	278
EgeI	GGCGCC	1 cut(s)	390
EheI	GGCGCC	1 cut(s)	390
ErhI	CCWWGG	3 cut(s)	29, 624, 930
FaiI	YATR	4 cut(s)	260, 417, 597, 666
FbaI	TGATCA	1 cut(s)	612
Fnu4HI	GCNGC	8 cut(s)	356, 359, 527, 777, 855, 858, 882, 936
FokI	GGATG	2 cut(s)	518, 839
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	8 cut(s)	356, 359, 527, 777, 855, 858, 882, 936
GlaI	GCGC	2 cut(s)	390, 928
GluI	GCNGC	8 cut(s)	356, 359, 527, 777, 855, 858, 882, 936
HaeII	RGCGCY	2 cut(s)	392, 930
HaeIII	GGCC	5 cut(s)	28, 225, 276, 398, 623
HapII	CCGG	6 cut(s)	249, 375, 392, 399, 542, 866
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	2 cut(s)	391, 929
Hin1I	GRCGYC	2 cut(s)	59, 389
Hin6I	GCGC	2 cut(s)	389, 927
HinP1I	GCGC	2 cut(s)	389, 927
HinfI	GANTC	8 cut(s)	94, 170, 320, 371, 383, 653, 659, 718
HpaII	CCGG	6 cut(s)	249, 375, 392, 399, 542, 866
HphI	GGTGA	4 cut(s)	238, 266, 544, 580
Hpy188I	TCNGA	5 cut(s)	175, 658, 678, 822, 924
Hpy188III	TCNNGA	3 cut(s)	167, 616, 722
Hpy99I	CGWCG	2 cut(s)	224, 287
HpyAV	CCTTC	9 cut(s)	127, 249, 585, 613, 637, 743, 805, 817, 907
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	794, 806, 854
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 346, 355, 395, 812, 935
HpyF3I	CTNAG	3 cut(s)	78, 98, 903
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	2 cut(s)	59, 389
HspAI	GCGC	2 cut(s)	389, 927
KasI	GGCGCC	1 cut(s)	388
Ksp22I	TGATCA	1 cut(s)	612
KspI	CCGCGG	1 cut(s)	359
Kzo9I	GATC	2 cut(s)	111, 612
LmnI	GCTCC	2 cut(s)	238, 924
Lsp1109I	GCAGC	5 cut(s)	538, 763, 844, 866, 922
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	3 cut(s)	55, 244, 254
MalI	GATC	2 cut(s)	113, 614
MboI	GATC	2 cut(s)	111, 612
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	2 cut(s)	629, 705
Mly113I	GGCGCC	1 cut(s)	389
MlyI	GAGTC	2 cut(s)	392, 727
Mph1103I	ATGCAT	1 cut(s)	808
MseI	TTAA	2 cut(s)	801, 891
MspA1I	CMGCKG	3 cut(s)	358, 529, 857
MspI	CCGG	6 cut(s)	249, 375, 392, 399, 542, 866
MspR9I	CCNGG	2 cut(s)	542, 867
MvnI	CGCG	1 cut(s)	358
MwoI	GCNNNNNNNGC	6 cut(s)	74, 346, 355, 395, 812, 935
NarI	GGCGCC	1 cut(s)	389
NciI	CCSGG	2 cut(s)	542, 867
NdeII	GATC	2 cut(s)	111, 612
NlaIV	GGNNCC	4 cut(s)	35, 177, 276, 390
NmeAIII	GCCGAG	2 cut(s)	579, 694
NmuCI	GTSAC	3 cut(s)	55, 244, 254
NsiI	ATGCAT	1 cut(s)	808
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PfeI	GAWTC	6 cut(s)	94, 170, 320, 371, 653, 659
PkrI	GCNGC	8 cut(s)	357, 360, 528, 778, 856, 859, 883, 937
PleI	GAGTC	2 cut(s)	391, 726
PluTI	GGCGCC	1 cut(s)	392
PpsI	GAGTC	2 cut(s)	391, 726
PspEI	GGTNACC	1 cut(s)	244
PspN4I	GGNNCC	4 cut(s)	35, 177, 276, 390
PspOMI	GGGCCC	1 cut(s)	274
PspPI	GGNCC	3 cut(s)	224, 274, 275
PstNI	CAGNNNCTG	2 cut(s)	77, 860
PvuII	CAGCTG	2 cut(s)	529, 857
SacII	CCGCGG	1 cut(s)	359
SaqAI	TTAA	2 cut(s)	801, 891
SatI	GCNGC	8 cut(s)	356, 359, 527, 777, 855, 858, 882, 936
Sau3AI	GATC	2 cut(s)	111, 612
Sau96I	GGNCC	3 cut(s)	224, 274, 275
SchI	GAGTC	2 cut(s)	392, 727
ScrFI	CCNGG	2 cut(s)	542, 867
SduI	GDGCHC	1 cut(s)	278
SfoI	GGCGCC	1 cut(s)	390
Sfr303I	CCGCGG	1 cut(s)	359
SgrAI	CRCCGGYG	2 cut(s)	248, 391
SgrBI	CCGCGG	1 cut(s)	359
Sse9I	AATT	2 cut(s)	629, 705
SsiI	CCGC	6 cut(s)	252, 356, 358, 361, 559, 881
SspDI	GGCGCC	1 cut(s)	388
StyD4I	CCNGG	2 cut(s)	540, 865
StyI	CCWWGG	3 cut(s)	29, 624, 930
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	3 cut(s)	285, 323, 833
TaqII	GACCGA	2 cut(s)	232, 257
TasI	AATT	2 cut(s)	629, 705
TauI	GCSGC	3 cut(s)	358, 361, 884
TfiI	GAWTC	6 cut(s)	94, 170, 320, 371, 653, 659
Tru1I	TTAA	2 cut(s)	801, 891
Tru9I	TTAA	2 cut(s)	801, 891
TscAI	CASTG	2 cut(s)	60, 127
TseFI	GTSAC	3 cut(s)	55, 244, 254
TseI	GCWGC	5 cut(s)	526, 776, 854, 857, 935
Tsp45I	GTSAC	3 cut(s)	55, 244, 254
TspDTI	ATGAA	1 cut(s)	333
TspRI	CASTG	2 cut(s)	60, 127
ZraI	GACGTC	1 cut(s)	60
Zsp2I	ATGCAT	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.