Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0010158

Physical Location & Seq

Genomic Coordinates Reverse (-)

4276048 .. 4276998

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAGTTTTTGGATGAGGACGCAAGGCCTAGGTTCCTCTTCCAATCCAAAGCAGTAGCTTCTTCTGCCACAGACCTGCAACCCCATTACAAGAATCTGAGCAAACCATTCATTTTCTTTACCATCTTGATCTCGTTTCTGTTAATGGGTCTCGCCTTCTTCCTCCTATCCGAACCCTACCAATCTCTTCTTATATGGGCCGCTCTCGCCCTCCTCATTGGCCCCTTTGCTCCTGCACCTGTCACTGGTGGTGACATTCGGGTTGGTCATGGCCCAATCGTCGACTTCCCAGAAATTGCAACCCAAGTAGAGGATGAATCAAAGAAGAGGGTTTCTCAGAAGAGATCAAAACCACGTCGATTTGACGAATTGGGGGCAGATTCAACGCCCATGCCTGAAACTATTAGTGGGTCTGTGAGAGAAAAGAAAAGGAGTGAGGCTTCCGAAGGTAATGGTAATGGGTCAGTGTTTTTTGGTGAAGAGACGGAGTGGGTTGAGGAGGATGTTGAGTTCTTGAAGAAACTGCTTTTGAAGCACCCGGTGGGGAAGCTCAGACGGTGGGAGGTTATCACCGAATCGTTTCAAGGAAAGCATAAGGTGGAGAGTGTGATAAAAAGGGCCAAAGAATTGGGAGAGAAGAAAGTGAGTGATTCAGATTCGTATGCAGAGTTTCTGAAGAAGCGTAAGCCCAATGACAAGAAAACTGAAAGTGGGAATCAAGAGTTGGGTGATGAGTCGGTGGCGGATAATGGTGAAGTGAAGAAAGAGAGTTGGTCTTCTACTGAAGACATTGCATTGCTGAATGCCTTGAAGGCATTTCCGAAGGAAGTGTCAATGAGGTGGGAGAAGATTGCAGCTGCTGTGCCTGGGAAGTCGAAGGCTGCTTGTATGAAGAGAGTTGCTGAGTTGAAGAAGGGCTTTCGGAGCGCCAAGGCTTCTAACGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016020 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040007 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060560 GO:0061649 GO:0065007 GO:0071695 GO:0071944 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140030 GO:0140035 GO:0140036 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

317

Amino Acids

35.31

Weight (kDa)

8.37

Isoelectric Point (pI)

53.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding_2	PF23082	163 - 232	5.1e-31	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	255 - 299	9.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45420 AT5G45420 AT5G45420
fragaria_vesca	FvH4_5g21140
malus_domestica	MD06G1040800.v1.1 MD16G1268900.v1.1
prunus_persica	Prupe.5G047100_v2.0.a1 Prupe.5G047100_v2.0.a1
pyrus_communis	pycom06g03400 pycom16g23790
rosa_chinensis	RchiOBHm_Chr7g0208261
rosa_laevigata	RLG00000003234
rosa_multiflora	Rmu_sc0000841.1_g000022 Rmu_sc0007869.1_g000020
rosa_roxburghii	Rroxscaffold_3G00250630
rosa_rugosa	Rorug07G0102600
rosa_samantha	Rh7AG236800 Rh7BG232400 Rh7CG252700 Rh7DG242800
rosa_wichuraiana	Rw7G020210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	84
AccBSI	CCGCTC	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	282
AciI	CCGC	2 cut(s)	201, 743
AcuI	CTGAAG	2 cut(s)	695, 804
AdeI	CACNNNGTG	1 cut(s)	541
AfiI	CCNNNNNNNGG	2 cut(s)	245, 310
AgsI	TTSAA	6 cut(s)	384, 517, 532, 584, 811, 910
AjiI	CACGTC	1 cut(s)	356
AjnI	CCWGG	1 cut(s)	865
AjuI	GAANNNNNNNTTGG	2 cut(s)	707, 739
AloI	GAACNNNNNNTCC	2 cut(s)	494, 526
AluBI	AGCT	3 cut(s)	59, 550, 857
AluI	AGCT	3 cut(s)	59, 550, 857
Alw26I	GTCTC	2 cut(s)	155, 476
AlwNI	CAGNNNCTG	1 cut(s)	860
AoxI	GGCC	5 cut(s)	26, 198, 220, 271, 618
ApeKI	GCWGC	3 cut(s)	854, 857, 881
ArsI	GACNNNNNNTTYG	2 cut(s)	815, 847
Asp700I	GAANNNNTTC	1 cut(s)	579
AspA2I	CCTAGG	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	929
AspS9I	GGNCC	4 cut(s)	198, 221, 272, 618
AsuC2I	CCSGG	1 cut(s)	539
AsuHPI	GGTGA	5 cut(s)	263, 488, 562, 740, 764
AvrII	CCTAGG	1 cut(s)	29
BbsI	GAAGAC	2 cut(s)	768, 792
BbvI	GCAGC	3 cut(s)	844, 866, 868
BccI	CCATC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	867
BcnI	CCSGG	1 cut(s)	539
BcoDI	GTCTC	2 cut(s)	155, 476
BfaI	CTAG	1 cut(s)	30
BfoI	RGCGCY	1 cut(s)	930
BfuAI	ACCTGC	1 cut(s)	84
BglI	GCCNNNNNGGC	1 cut(s)	812
BisI	GCNGC	4 cut(s)	201, 855, 858, 882
BlnI	CCTAGG	1 cut(s)	29
BlsI	GCNGC	4 cut(s)	202, 856, 859, 883
Bme1390I	CCNGG	2 cut(s)	539, 867
BmgBI	CACGTC	1 cut(s)	356
BmgT120I	GGNCC	4 cut(s)	198, 221, 272, 618
BmiI	GGNNCC	2 cut(s)	35, 223
BmrFI	CCNGG	2 cut(s)	539, 867
BpiI	GAAGAC	2 cut(s)	768, 792
BplI	GAGNNNNNCTC	2 cut(s)	319, 351
BpuMI	CCSGG	1 cut(s)	539
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	3 cut(s)	29, 866, 930
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 310
Bse1I	ACTGG	1 cut(s)	250
Bse3DI	GCAATG	2 cut(s)	789, 794
BseBI	CCWGG	1 cut(s)	867
BseDI	CCNNGG	3 cut(s)	29, 866, 930
BseGI	GGATG	3 cut(s)	19, 319, 508
BseLI	CCNNNNNNNGG	2 cut(s)	245, 310
BseMI	GCAATG	2 cut(s)	789, 794
BseMII	CTCAG	4 cut(s)	89, 350, 565, 894
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	2 cut(s)	203, 512
BseXI	GCAGC	3 cut(s)	844, 866, 868
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	5 cut(s)	28, 200, 222, 273, 620
BsiSI	CCGG	1 cut(s)	539
BslI	CCNNNNNNNGG	2 cut(s)	245, 310
BsmAI	GTCTC	2 cut(s)	155, 476
BsmBI	CGTCTC	1 cut(s)	476
BsmI	GAATGC	1 cut(s)	808
BsnI	GGCC	5 cut(s)	28, 200, 222, 273, 620
Bso31I	GGTCTC	1 cut(s)	155
Bsp143I	GATC	2 cut(s)	129, 344
BspACI	CCGC	2 cut(s)	201, 743
BspANI	GGCC	5 cut(s)	28, 200, 222, 273, 620
BspCNI	CTCAG	4 cut(s)	90, 349, 564, 895
BspLI	GGNNCC	2 cut(s)	35, 223
BspMI	ACCTGC	1 cut(s)	84
BspTNI	GGTCTC	1 cut(s)	155
BsrBI	CCGCTC	1 cut(s)	203
BsrDI	GCAATG	2 cut(s)	789, 794
BsrI	ACTGG	1 cut(s)	250
BssECI	CCNNGG	3 cut(s)	29, 866, 930
BssMI	GATC	2 cut(s)	129, 344
BssT1I	CCWWGG	2 cut(s)	29, 930
Bst2UI	CCWGG	1 cut(s)	867
Bst4CI	ACNGT	1 cut(s)	558
Bst6I	CTCTTC	7 cut(s)	44, 192, 320, 335, 474, 887, 939
BstDEI	CTNAG	4 cut(s)	98, 336, 551, 903
BstF5I	GGATG	3 cut(s)	19, 319, 508
BstH2I	RGCGCY	1 cut(s)	930
BstHHI	GCGC	1 cut(s)	929
BstKTI	GATC	2 cut(s)	132, 347
BstMAI	GTCTC	2 cut(s)	155, 476
BstMBI	GATC	2 cut(s)	129, 344
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 206, 532, 812, 924
BstNI	CCWGG	1 cut(s)	867
BstSCI	CCNGG	2 cut(s)	537, 865
BstV1I	GCAGC	3 cut(s)	844, 866, 868
BstV2I	GAAGAC	2 cut(s)	768, 792
BstXI	CCANNNNNNTGG	1 cut(s)	628
BsuRI	GGCC	5 cut(s)	28, 200, 222, 273, 620
BtrI	CACGTC	1 cut(s)	356
BtsCI	GGATG	3 cut(s)	19, 319, 508
BtsIMutI	CAGTG	2 cut(s)	243, 471
BveI	ACCTGC	1 cut(s)	84
CaiI	CAGNNNCTG	1 cut(s)	860
CfoI	GCGC	1 cut(s)	929
Cfr13I	GGNCC	4 cut(s)	198, 221, 272, 618
CseI	GACGC	1 cut(s)	29
CviAII	CATG	2 cut(s)	269, 391
DdeI	CTNAG	4 cut(s)	98, 336, 551, 903
DpnI	GATC	2 cut(s)	131, 346
DpnII	GATC	2 cut(s)	129, 344
DraIII	CACNNNGTG	1 cut(s)	541
Eam1104I	CTCTTC	7 cut(s)	44, 192, 320, 335, 474, 887, 939
EarI	CTCTTC	7 cut(s)	44, 192, 320, 335, 474, 887, 939
EciI	GGCGGA	1 cut(s)	758
Eco130I	CCWWGG	2 cut(s)	29, 930
Eco147I	AGGCCT	1 cut(s)	28
Eco31I	GGTCTC	1 cut(s)	155
Eco57I	CTGAAG	2 cut(s)	695, 804
EcoRII	CCWGG	1 cut(s)	865
EcoT14I	CCWWGG	2 cut(s)	29, 930
ErhI	CCWWGG	2 cut(s)	29, 930
Esp3I	CGTCTC	1 cut(s)	476
FaeI	CATG	2 cut(s)	272, 394
FaiI	YATR	7 cut(s)	194, 196, 270, 392, 594, 663, 890
FalI	AAGNNNNNCTT	2 cut(s)	902, 934
FatI	CATG	2 cut(s)	268, 390
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	4 cut(s)	201, 855, 858, 882
FokI	GGATG	3 cut(s)	26, 326, 515
Fsp4HI	GCNGC	4 cut(s)	201, 855, 858, 882
FspBI	CTAG	1 cut(s)	30
GlaI	GCGC	1 cut(s)	928
GluI	GCNGC	4 cut(s)	201, 855, 858, 882
HaeII	RGCGCY	1 cut(s)	930
HaeIII	GGCC	5 cut(s)	28, 200, 222, 273, 620
HapII	CCGG	1 cut(s)	539
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	1 cut(s)	929
Hin1II	CATG	2 cut(s)	272, 394
Hin6I	GCGC	1 cut(s)	927
HinP1I	GCGC	1 cut(s)	927
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	8 cut(s)	94, 317, 380, 575, 650, 656, 715, 734
HpaII	CCGG	1 cut(s)	539
HphI	GGTGA	5 cut(s)	263, 488, 562, 740, 764
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	9 cut(s)	99, 172, 339, 445, 554, 655, 675, 822, 924
Hpy188III	TCNNGA	3 cut(s)	127, 514, 719
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	2 cut(s)	284, 360
HpyAV	CCTTC	6 cut(s)	166, 440, 805, 817, 871, 907
HpyCH4III	ACNGT	1 cut(s)	558
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	6 cut(s)	79, 236, 299, 665, 794, 854
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 206, 532, 812, 924
HpyF3I	CTNAG	4 cut(s)	98, 336, 551, 903
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	2 cut(s)	272, 394
HspAI	GCGC	1 cut(s)	927
Kzo9I	GATC	2 cut(s)	129, 344
LmnI	GCTCC	2 cut(s)	235, 924
LpnPI	CCDG	9 cut(s)	89, 231, 246, 252, 303, 408, 552, 852, 879
Lsp1109I	GCAGC	3 cut(s)	844, 866, 868
MaeI	CTAG	1 cut(s)	30
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	2 cut(s)	241, 251
MalI	GATC	2 cut(s)	131, 346
MbiI	CCGCTC	1 cut(s)	203
MboI	GATC	2 cut(s)	129, 344
MluCI	AATT	3 cut(s)	294, 368, 626
MlyI	GAGTC	1 cut(s)	743
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	857
MspI	CCGG	1 cut(s)	539
MspR9I	CCNGG	2 cut(s)	539, 867
Mva1269I	GAATGC	1 cut(s)	808
MvaI	CCWGG	1 cut(s)	867
MwoI	GCNNNNNNNGC	5 cut(s)	65, 206, 532, 812, 924
NciI	CCSGG	1 cut(s)	539
NdeII	GATC	2 cut(s)	129, 344
NlaIII	CATG	2 cut(s)	272, 394
NlaIV	GGNNCC	2 cut(s)	35, 223
NmuCI	GTSAC	2 cut(s)	241, 251
PceI	AGGCCT	1 cut(s)	28
PctI	GAATGC	1 cut(s)	808
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	7 cut(s)	94, 317, 380, 575, 650, 656, 715
PkrI	GCNGC	4 cut(s)	202, 856, 859, 883
PleI	GAGTC	1 cut(s)	742
PpsI	GAGTC	1 cut(s)	742
Psp6I	CCWGG	1 cut(s)	865
PspGI	CCWGG	1 cut(s)	865
PspN4I	GGNNCC	2 cut(s)	35, 223
PspPI	GGNCC	4 cut(s)	198, 221, 272, 618
PstNI	CAGNNNCTG	1 cut(s)	860
PvuII	CAGCTG	1 cut(s)	857
SalI	GTCGAC	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	4 cut(s)	201, 855, 858, 882
Sau3AI	GATC	2 cut(s)	129, 344
Sau96I	GGNCC	4 cut(s)	198, 221, 272, 618
SchI	GAGTC	1 cut(s)	743
ScrFI	CCNGG	2 cut(s)	539, 867
Sse9I	AATT	3 cut(s)	294, 368, 626
SseBI	AGGCCT	1 cut(s)	28
SsiI	CCGC	2 cut(s)	201, 743
SspMI	CTAG	1 cut(s)	30
StuI	AGGCCT	1 cut(s)	28
StyD4I	CCNGG	2 cut(s)	537, 865
StyI	CCWWGG	2 cut(s)	29, 930
TaaI	ACNGT	1 cut(s)	558
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	3 cut(s)	282, 358, 875
TasI	AATT	3 cut(s)	294, 368, 626
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	7 cut(s)	94, 317, 380, 575, 650, 656, 715
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	2 cut(s)	250, 471
TseFI	GTSAC	2 cut(s)	241, 251
TseI	GCWGC	3 cut(s)	854, 857, 881
Tsp45I	GTSAC	2 cut(s)	241, 251
TspDTI	ATGAA	3 cut(s)	100, 330, 905
TspGWI	ACGGA	1 cut(s)	500
TspRI	CASTG	2 cut(s)	250, 471
XmaJI	CCTAGG	1 cut(s)	29
XmiI	GTMKAC	1 cut(s)	282
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.