Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007804

Physical Location & Seq

Genomic Coordinates Forward (+)

18530834 .. 18532337

Gene Structure 1504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G45680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAGCTCCTTGGGGTTTTCAGTTGGAACTTGTTCTCCTCCAAGTGAGAAAAGAAAATGCAGATTTCTTGTGAATAATAGCTTAAACAAAGCAGAGGCTATTAACTTGAGAAACAAGCAAAAAGTTTCTTCTGATCCTGAGTTAAGTTTTGCCCAATTATCCTCATGTGGTAGAAGAGAAGCAATTATTGGTTTTGGTTTCTCTATTGGCTTGCTTGATAATGTTTCTGCATTAGCCGAAACAACTTCTTGTGAATTCTCTGTGTCTCCTTCTGGTCTTGCTTTTTGTGATAAAGTTGTTGGTTATGGTCCTGAAGCTGTTAAAGGGCAACTAATCAAGGCACATTATGTAGGGAAGTTGGAGAATGGGAAAGTCTTTGATAGTAGCTATAATCGAGGGAAACCTCTTACTTTCCGAATTGGTGTTGGTGAGGTGATAAAAGGTTGGGATCAAGGAATCCTTGGCTCTGATGGAATTCCTCCTATGCTTACTGGTGGGAAACGAACATTGAGGATTCCTCCAGAACTCGCGTATGGTGATCGAGGCGCAGGTTGCAAAGGAGGCTCATGCCTTATTCCTCCAGCTTCGGTTCTTCTCTTTGACATTGAGTACATAGGTAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

208

Amino Acids

22.04

Weight (kDa)

8.96

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	104 - 203	1.2e-29	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45680
fragaria_vesca	FvH4_3g13210
malus_domestica	MD05G1244300.v1.1
prunus_persica	Prupe.4G119400_v2.0.a1
pyrus_communis	pycom05g22070
rosa_chinensis	RchiOBHm_Chr5g0021551 RchiOBHm_Chr7g0219431
rosa_laevigata	RLG00000032614
rosa_multiflora	Rmu_sc0002052.1_g000013 Rmu_sc0002460.1_g000022 Rmu_sc0003767.1_g000013 Rmu_sc0023070.1_g000005
rosa_roxburghii	Rroxscaffold_1G00057100
rosa_rugosa	Rorug07G0185000 Rorug07G0185100
rosa_samantha	Rh5AG156500 Rh5CG170200 Rh5DG156400 Rh7AG327900 Rh7BG317900 Rh7CG345300 Rh7DG323300
rosa_wichuraiana	Rw7G027660 Rw7G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	539
AccII	CGCG	1 cut(s)	530
AclWI	GGATC	2 cut(s)	128, 456
AcsI	RAATTY	2 cut(s)	254, 474
AcuI	CTGAAG	1 cut(s)	333
AfaI	GTAC	1 cut(s)	611
AjuI	GAANNNNNNNTTGG	2 cut(s)	171, 203
AloI	GAACNNNNNNTCC	2 cut(s)	19, 51
AluBI	AGCT	6 cut(s)	6, 81, 317, 387, 584, 623
AluI	AGCT	6 cut(s)	6, 81, 317, 387, 584, 623
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	270
AlwI	GGATC	2 cut(s)	128, 456
ApoI	RAATTY	2 cut(s)	254, 474
Asp700I	GAANNNNTTC	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	548
AspS9I	GGNCC	1 cut(s)	308
AsuHPI	GGTGA	3 cut(s)	440, 445, 548
AvaII	GGWCC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	1 cut(s)	464
BcoDI	GTCTC	1 cut(s)	270
BfuAI	ACCTGC	1 cut(s)	539
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	308
BplI	GAGNNNNNCTC	2 cut(s)	502, 534
BpmI	CTGGAG	2 cut(s)	504, 564
BpuEI	CTTGAG	1 cut(s)	127
BsaJI	CCNNGG	2 cut(s)	9, 460
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bse1I	ACTGG	1 cut(s)	496
BseDI	CCNNGG	2 cut(s)	9, 460
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	496
BseRI	GAGGAG	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	530
BsiHKAI	GWGCWC	1 cut(s)	8
BsmAI	GTCTC	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	133, 448, 538
BspCNI	CTCAG	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	530
BspMI	ACCTGC	1 cut(s)	539
BspPI	GGATC	2 cut(s)	128, 456
BsrI	ACTGG	1 cut(s)	496
BssECI	CCNNGG	2 cut(s)	9, 460
BssMI	GATC	3 cut(s)	133, 448, 538
BssT1I	CCWWGG	2 cut(s)	9, 460
Bst6I	CTCTTC	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	138
BstFNI	CGCG	1 cut(s)	530
BstHHI	GCGC	1 cut(s)	548
BstKTI	GATC	3 cut(s)	136, 451, 541
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	3 cut(s)	133, 448, 538
BstMWI	GCNNNNNNNGC	2 cut(s)	552, 561
BstUI	CGCG	1 cut(s)	530
BveI	ACCTGC	1 cut(s)	539
Cac8I	GCNNGC	1 cut(s)	212
CfoI	GCGC	1 cut(s)	548
Cfr13I	GGNCC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	610
CviAII	CATG	2 cut(s)	165, 567
CviQI	GTAC	1 cut(s)	610
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	3 cut(s)	135, 450, 540
DpnII	GATC	3 cut(s)	133, 448, 538
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	9, 460
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	308
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	333
EcoICRI	GAGCTC	1 cut(s)	6
EcoRI	GAATTC	2 cut(s)	254, 474
EcoT14I	CCWWGG	2 cut(s)	9, 460
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	9, 460
FaeI	CATG	2 cut(s)	168, 570
FaiI	YATR	8 cut(s)	166, 306, 348, 390, 485, 534, 568, 614
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FatI	CATG	2 cut(s)	164, 566
FriOI	GRGCYC	1 cut(s)	8
GlaI	GCGC	1 cut(s)	547
GsuI	CTGGAG	2 cut(s)	504, 564
HhaI	GCGC	1 cut(s)	548
Hin1II	CATG	2 cut(s)	168, 570
Hin6I	GCGC	1 cut(s)	546
HinP1I	GCGC	1 cut(s)	546
HindIII	AAGCTT	1 cut(s)	621
HinfI	GANTC	2 cut(s)	456, 514
HphI	GGTGA	3 cut(s)	440, 445, 548
Hpy188I	TCNGA	3 cut(s)	133, 416, 469
Hpy188III	TCNNGA	3 cut(s)	137, 311, 521
HpyAV	CCTTC	1 cut(s)	279
HpyCH4V	TGCA	3 cut(s)	60, 230, 555
HpyF10VI	GCNNNNNNNGC	2 cut(s)	552, 561
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	168, 570
HspAI	GCGC	1 cut(s)	546
Kzo9I	GATC	3 cut(s)	133, 448, 538
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	7 cut(s)	150, 258, 324, 477, 534, 534, 594
MalI	GATC	3 cut(s)	135, 450, 540
MboI	GATC	3 cut(s)	133, 448, 538
MboII	GAAGA	3 cut(s)	120, 186, 584
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	5 cut(s)	155, 183, 254, 417, 474
MmeI	TCCRAC	2 cut(s)	4, 339
MroXI	GAANNNNTTC	1 cut(s)	31
MseI	TTAA	4 cut(s)	83, 102, 143, 321
MvnI	CGCG	1 cut(s)	530
MwoI	GCNNNNNNNGC	2 cut(s)	552, 561
NdeII	GATC	3 cut(s)	133, 448, 538
NlaIII	CATG	2 cut(s)	168, 570
PdmI	GAANNNNTTC	1 cut(s)	31
PfeI	GAWTC	2 cut(s)	456, 514
Psp124BI	GAGCTC	1 cut(s)	8
PspPI	GGNCC	1 cut(s)	308
RsaI	GTAC	1 cut(s)	611
RsaNI	GTAC	1 cut(s)	610
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	4 cut(s)	83, 102, 143, 321
Sau3AI	GATC	3 cut(s)	133, 448, 538
Sau96I	GGNCC	1 cut(s)	308
SduI	GDGCHC	1 cut(s)	8
SinI	GGWCC	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	5 cut(s)	155, 183, 254, 417, 474
SstI	GAGCTC	1 cut(s)	8
StyI	CCWWGG	2 cut(s)	9, 460
TaqI	TCGA	2 cut(s)	394, 541
TasI	AATT	5 cut(s)	155, 183, 254, 417, 474
TatI	WGTACW	1 cut(s)	609
TfiI	GAWTC	2 cut(s)	456, 514
Tru1I	TTAA	4 cut(s)	83, 102, 143, 321
Tru9I	TTAA	4 cut(s)	83, 102, 143, 321
VpaK11BI	GGWCC	1 cut(s)	308
XapI	RAATTY	2 cut(s)	254, 474
XmnI	GAANNNNTTC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.