Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007804

Physical Location & Seq

Genomic Coordinates Reverse (-)

16475173 .. 16477451

Gene Structure 2279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG156500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAGCTCGGTGGCATCTTCCCTTGGCACTTGCAAATGCAATCCCAGAAAGCTCAGAACATTCAGTACTCTACCACTGAAGGATTTCAGTGCCCCTAAAACCTCAAGAATCAAAATCTTAAGCCAGGCCCAGAAAAGCTCACCTTCTTCTGAACATGTTCTGCAGCTAAATAATGAGAAGCCAAGTTTTTCAAGGAGAAGAGAAGCAATTGGTTTTGGCTTCTGCTTTGGCCTTGTTGAAGTGCTCTTGCCAGGTCAACCCACTGAAGCAGCTGAAGTTGCTCCTTGTGAATTTACTGTAGCTCCTTCTGGACTAGCTTTCTGTGATAAAGTAGTGGGATATGGAGCTGAGGCTGTTAAGGGACAGATGATTAAGGCACACTACACTGGGAAATTGGAGAATGGCAAGGTGTTCGATAGTAGCTATAATCGTGGGAAGCCCCTTACATTCCGAATTGGTGCTGGTGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

157

Amino Acids

16.91

Weight (kDa)

9.42

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	117 - 157	6.5e-11	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45680
fragaria_vesca	FvH4_3g13210
malus_domestica	MD05G1244300.v1.1
prunus_persica	Prupe.4G119400_v2.0.a1
pyrus_communis	pycom05g22070
rosa_chinensis	RchiOBHm_Chr5g0021551 RchiOBHm_Chr7g0219431
rosa_laevigata	RLG00000032614
rosa_multiflora	Rmu_sc0002052.1_g000013 Rmu_sc0002460.1_g000022 Rmu_sc0003767.1_g000013 Rmu_sc0023070.1_g000005
rosa_roxburghii	Rroxscaffold_1G00057100
rosa_rugosa	Rorug07G0185000 Rorug07G0185100
rosa_samantha	Rh5AG156500 Rh5CG170200 Rh5DG156400 Rh7AG327900 Rh7BG317900 Rh7CG345300 Rh7DG323300
rosa_wichuraiana	Rw7G027660 Rw7G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	290
AcuI	CTGAAG	3 cut(s)	98, 285, 294
AfaI	GTAC	1 cut(s)	67
AflII	CTTAAG	1 cut(s)	118
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	192, 239
AjnI	CCWGG	2 cut(s)	123, 250
AluBI	AGCT	9 cut(s)	6, 52, 138, 166, 272, 302, 317, 347, 423
AluI	AGCT	9 cut(s)	6, 52, 138, 166, 272, 302, 317, 347, 423
Alw21I	GWGCWC	2 cut(s)	8, 246
AoxI	GGCC	2 cut(s)	126, 229
ApeKI	GCWGC	2 cut(s)	163, 269
ApoI	RAATTY	1 cut(s)	290
Asp700I	GAANNNNTTC	2 cut(s)	83, 156
AspS9I	GGNCC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	132
BaeGI	GKGCMC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	2 cut(s)	8, 246
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	175, 281
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BciT130I	CCWGG	2 cut(s)	125, 252
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	2 cut(s)	161, 297
BfrI	CTTAAG	1 cut(s)	118
BisI	GCNGC	2 cut(s)	164, 270
BlsI	GCNGC	2 cut(s)	165, 271
BmcAI	AGTACT	1 cut(s)	67
Bme1390I	CCNGG	2 cut(s)	125, 252
BmgT120I	GGNCC	1 cut(s)	127
BmrFI	CCNGG	2 cut(s)	125, 252
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	23
BmuI	ACTGGG	1 cut(s)	396
Bpu10I	CCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	88
BsaJI	CCNNGG	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	286, 316
Bse1I	ACTGG	1 cut(s)	391
BseBI	CCWGG	2 cut(s)	125, 252
BseDI	CCNNGG	1 cut(s)	22
BseMII	CTCAG	2 cut(s)	67, 339
BseNI	ACTGG	1 cut(s)	391
BseSI	GKGCMC	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	175, 281
BshFI	GGCC	2 cut(s)	128, 231
BsiHKAI	GWGCWC	2 cut(s)	8, 246
BslFI	GGGAC	1 cut(s)	375
BsmFI	GGGAC	1 cut(s)	375
BsnI	GGCC	2 cut(s)	128, 231
Bsp1286I	GDGCHC	3 cut(s)	8, 94, 246
BspANI	GGCC	2 cut(s)	128, 231
BspCNI	CTCAG	2 cut(s)	66, 340
BspMAI	CTGCAG	1 cut(s)	165
BspTI	CTTAAG	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	391
BssECI	CCNNGG	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	22
Bst2UI	CCWGG	2 cut(s)	125, 252
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	1 cut(s)	193
BstAFI	CTTAAG	1 cut(s)	118
BstDEI	CTNAG	2 cut(s)	53, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNI	CCWGG	2 cut(s)	125, 252
BstNSI	RCATGY	1 cut(s)	158
BstSCI	CCNGG	2 cut(s)	123, 250
BstSFI	CTRYAG	2 cut(s)	161, 297
BstSLI	GKGCMC	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	175, 281
BsuRI	GGCC	2 cut(s)	128, 231
BtsIMutI	CAGTG	4 cut(s)	74, 94, 261, 384
Cfr13I	GGNCC	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	66
CviAII	CATG	1 cut(s)	155
CviQI	GTAC	1 cut(s)	66
DdeI	CTNAG	2 cut(s)	53, 348
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	3 cut(s)	98, 285, 294
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	2 cut(s)	123, 250
EcoT14I	CCWWGG	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	1 cut(s)	158
FaiI	YATR	4 cut(s)	156, 342, 426, 472
FalI	AAGNNNNNCTT	2 cut(s)	127, 159
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	1 cut(s)	154
Fnu4HI	GCNGC	2 cut(s)	164, 270
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	164, 270
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	2 cut(s)	164, 270
HaeIII	GGCC	2 cut(s)	128, 231
Hin1II	CATG	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	257
HindII	GTYRAC	1 cut(s)	257
HinfI	GANTC	1 cut(s)	108
HphI	GGTGA	1 cut(s)	132
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	3 cut(s)	56, 151, 452
Hpy188III	TCNNGA	2 cut(s)	105, 309
Hpy8I	GTNNAC	1 cut(s)	257
HpyAV	CCTTC	3 cut(s)	73, 153, 315
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4V	TGCA	3 cut(s)	33, 39, 163
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	2 cut(s)	53, 348
Hsp92II	CATG	1 cut(s)	158
LmnI	GCTCC	3 cut(s)	286, 307, 344
LpnPI	CCDG	9 cut(s)	58, 110, 137, 143, 237, 264, 294, 372, 447
Lsp1109I	GCAGC	2 cut(s)	175, 281
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	314
MboII	GAAGA	3 cut(s)	9, 138, 210
MfeI	CAATTG	1 cut(s)	207
MhlI	GDGCHC	3 cut(s)	8, 94, 246
MluCI	AATT	4 cut(s)	207, 290, 392, 453
MnlI	CCTC	3 cut(s)	112, 343, 460
MroXI	GAANNNNTTC	2 cut(s)	83, 156
MseI	TTAA	3 cut(s)	119, 357, 372
MspA1I	CMGCKG	1 cut(s)	272
MspCI	CTTAAG	1 cut(s)	118
MspR9I	CCNGG	2 cut(s)	125, 252
MunI	CAATTG	1 cut(s)	207
MvaI	CCWGG	2 cut(s)	125, 252
MwoI	GCNNNNNNNGC	1 cut(s)	278
NlaIII	CATG	1 cut(s)	158
NspI	RCATGY	1 cut(s)	158
PciI	ACATGT	1 cut(s)	154
PdmI	GAANNNNTTC	2 cut(s)	83, 156
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	165, 271
PscI	ACATGT	1 cut(s)	154
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	123, 250
PspGI	CCWGG	2 cut(s)	123, 250
PspPI	GGNCC	1 cut(s)	127
PsrI	GAACNNNNNNTAC	2 cut(s)	49, 81
PstI	CTGCAG	1 cut(s)	165
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	3 cut(s)	119, 357, 372
SatI	GCNGC	2 cut(s)	164, 270
Sau96I	GGNCC	1 cut(s)	127
ScaI	AGTACT	1 cut(s)	67
ScrFI	CCNGG	2 cut(s)	125, 252
SduI	GDGCHC	3 cut(s)	8, 94, 246
SfaNI	GCATC	1 cut(s)	23
SfcI	CTRYAG	2 cut(s)	161, 297
SmlI	CTYRAG	2 cut(s)	103, 118
SmoI	CTYRAG	2 cut(s)	103, 118
Sse9I	AATT	4 cut(s)	207, 290, 392, 453
SspMI	CTAG	1 cut(s)	314
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	123, 250
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	298
TaqI	TCGA	1 cut(s)	414
TasI	AATT	4 cut(s)	207, 290, 392, 453
TatI	WGTACW	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	3 cut(s)	119, 357, 372
Tru9I	TTAA	3 cut(s)	119, 357, 372
TscAI	CASTG	4 cut(s)	81, 94, 268, 391
TseI	GCWGC	2 cut(s)	163, 269
TspRI	CASTG	4 cut(s)	81, 94, 268, 391
Vha464I	CTTAAG	1 cut(s)	118
XapI	RAATTY	1 cut(s)	290
XceI	RCATGY	1 cut(s)	158
XmnI	GAANNNNTTC	2 cut(s)	83, 156
XspI	CTAG	1 cut(s)	314
ZrmI	AGTACT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.