Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007804

Physical Location & Seq

Genomic Coordinates Reverse (-)

7880704 .. 7882192

Gene Structure 1489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAGCTCGGTGGCATCTTCTGTTGGTACTTGCAGTCCCAGAAAGCTCAGTACTCTACCACGGAAGGATTTCAATACACCTGAAACGTCAAGAATCAAAATCTTAAACCCTGCCCAGAAAAGCTCACCTTCTTCTGAACAGGTTCTGCAGCTAAATAATGAGAAGCCAAGTTTATTAAGGAGAAGAGAAGCAATTGGTTTTGGCTTTTGCTTTGGCCTTGTTGATGTGCTCATGCCAGCTCAACCCACTGAAGCAGCTGAAGTTGCTCCTTGTGAATTTACTGTAGCTTCTTCTGGACTAGCTTATTGTGACAAAGTAGTGGGATATGGAGCTGAGGCTGTTAAGGGACAAATGATTAAGGCACACTACACTGGGAAATTGGAGAATGGCAAGGTGTTCGATAGTAGCTATAATCGTGGGAAGCCCCTTACATTCCGCGTTGGTGCTGGTGAGGTAATCAAAGGGTGGGACCAAGGTATTCTTGGTGGCGATGGAATTCCTCCCATGCTTGCTGGGGGGAAACGGACCTTGAAGATCCCTGCAGAACTTGCATACGGTGCACGGGGAGCTGGATGTAGAGGAGGTTCGTGTATCATTCCTCCATATTCAGTTCTTTTGTTTGATGTGGAATTCATTGGCAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

216

Amino Acids

22.77

Weight (kDa)

9.14

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	112 - 211	2.1e-29	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45680
fragaria_vesca	FvH4_3g13210
malus_domestica	MD05G1244300.v1.1
prunus_persica	Prupe.4G119400_v2.0.a1
pyrus_communis	pycom05g22070
rosa_chinensis	RchiOBHm_Chr5g0021551 RchiOBHm_Chr7g0219431
rosa_laevigata	RLG00000032614
rosa_multiflora	Rmu_sc0002052.1_g000013 Rmu_sc0002460.1_g000022 Rmu_sc0003767.1_g000013 Rmu_sc0023070.1_g000005
rosa_roxburghii	Rroxscaffold_1G00057100
rosa_rugosa	Rorug07G0185000 Rorug07G0185100
rosa_samantha	Rh5AG156500 Rh5CG170200 Rh5DG156400 Rh7AG327900 Rh7BG317900 Rh7CG345300 Rh7DG323300
rosa_wichuraiana	Rw7G027660 Rw7G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	438
AciI	CCGC	1 cut(s)	436
AclWI	GGATC	1 cut(s)	529
AcsI	RAATTY	3 cut(s)	275, 495, 629
AcuI	CTGAAG	2 cut(s)	270, 279
AfaI	GTAC	2 cut(s)	28, 52
AgsI	TTSAA	2 cut(s)	73, 532
Alw21I	GWGCWC	3 cut(s)	8, 231, 562
Alw44I	GTGCAC	1 cut(s)	558
AlwI	GGATC	1 cut(s)	529
AlwNI	CAGNNNCTG	1 cut(s)	145
AoxI	GGCC	1 cut(s)	214
ApaLI	GTGCAC	1 cut(s)	558
ApeKI	GCWGC	2 cut(s)	148, 254
ApoI	RAATTY	3 cut(s)	275, 495, 629
Asp700I	GAANNNNTTC	2 cut(s)	68, 141
AspS9I	GGNCC	2 cut(s)	469, 525
AsuHPI	GGTGA	2 cut(s)	117, 461
AvaII	GGWCC	2 cut(s)	469, 525
BaeGI	GKGCMC	1 cut(s)	562
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	3 cut(s)	8, 231, 562
BbvCI	CCTCAGC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	160, 266
BccI	CCATC	1 cut(s)	485
BcgI	CGANNNNNNTGC	2 cut(s)	379, 413
BfaI	CTAG	1 cut(s)	299
BfmI	CTRYAG	3 cut(s)	146, 282, 540
BisI	GCNGC	2 cut(s)	149, 255
BlsI	GCNGC	2 cut(s)	150, 256
BmcAI	AGTACT	1 cut(s)	52
Bme18I	GGWCC	2 cut(s)	469, 525
BmgT120I	GGNCC	2 cut(s)	469, 525
BmiI	GGNNCC	1 cut(s)	470
BmrI	ACTGGG	1 cut(s)	381
BmsI	GCATC	1 cut(s)	23
BmuI	ACTGGG	1 cut(s)	381
Bpu10I	CCTNAGC	1 cut(s)	333
BsaJI	CCNNGG	2 cut(s)	59, 472
Bse1I	ACTGG	1 cut(s)	376
BseDI	CCNNGG	2 cut(s)	59, 472
BseGI	GGATG	1 cut(s)	578
BseMII	CTCAG	2 cut(s)	61, 324
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	1 cut(s)	594
BseSI	GKGCMC	1 cut(s)	562
BseXI	GCAGC	2 cut(s)	160, 266
BseYI	CCCAGC	1 cut(s)	512
Bsh1236I	CGCG	1 cut(s)	438
BshFI	GGCC	1 cut(s)	216
BsiHKAI	GWGCWC	3 cut(s)	8, 231, 562
BslFI	GGGAC	3 cut(s)	21, 360, 482
BsmFI	GGGAC	3 cut(s)	21, 360, 482
BsnI	GGCC	1 cut(s)	216
Bsp1286I	GDGCHC	3 cut(s)	8, 231, 562
Bsp143I	GATC	1 cut(s)	534
BspACI	CCGC	1 cut(s)	436
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	2 cut(s)	60, 325
BspFNI	CGCG	1 cut(s)	438
BspLI	GGNNCC	1 cut(s)	470
BspMAI	CTGCAG	2 cut(s)	150, 544
BspPI	GGATC	1 cut(s)	529
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	2 cut(s)	59, 472
BssMI	GATC	1 cut(s)	534
BssT1I	CCWWGG	1 cut(s)	472
Bst4CI	ACNGT	2 cut(s)	283, 557
Bst6I	CTCTTC	1 cut(s)	178
BstAPI	GCANNNNNTGC	2 cut(s)	548, 557
BstC8I	GCNNGC	2 cut(s)	237, 510
BstDEI	CTNAG	2 cut(s)	47, 333
BstDSI	CCRYGG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	578
BstFNI	CGCG	1 cut(s)	438
BstKTI	GATC	1 cut(s)	537
BstMBI	GATC	1 cut(s)	534
BstMWI	GCNNNNNNNGC	4 cut(s)	263, 548, 557, 566
BstSFI	CTRYAG	3 cut(s)	146, 282, 540
BstSLI	GKGCMC	1 cut(s)	562
BstUI	CGCG	1 cut(s)	438
BstV1I	GCAGC	2 cut(s)	160, 266
BstX2I	RGATCY	1 cut(s)	534
BstYI	RGATCY	1 cut(s)	534
BsuRI	GGCC	1 cut(s)	216
BtgI	CCRYGG	1 cut(s)	59
BtgZI	GCGATG	1 cut(s)	504
BtsCI	GGATG	1 cut(s)	578
BtsIMutI	CAGTG	2 cut(s)	246, 369
Cac8I	GCNNGC	2 cut(s)	237, 510
CaiI	CAGNNNCTG	1 cut(s)	145
Cfr13I	GGNCC	2 cut(s)	469, 525
Csp6I	GTAC	2 cut(s)	27, 51
CviAII	CATG	3 cut(s)	232, 505, 645
CviQI	GTAC	2 cut(s)	27, 51
DdeI	CTNAG	2 cut(s)	47, 333
DpnI	GATC	1 cut(s)	536
DpnII	GATC	1 cut(s)	534
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	472
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	2 cut(s)	469, 525
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	270, 279
EcoICRI	GAGCTC	1 cut(s)	6
EcoRI	GAATTC	2 cut(s)	495, 629
EcoT14I	CCWWGG	1 cut(s)	472
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	472
FaeI	CATG	3 cut(s)	235, 508, 648
FaiI	YATR	7 cut(s)	233, 327, 411, 506, 553, 604, 646
FalI	AAGNNNNNCTT	4 cut(s)	112, 144, 465, 497
FaqI	GGGAC	3 cut(s)	21, 360, 482
FatI	CATG	3 cut(s)	231, 504, 644
Fnu4HI	GCNGC	2 cut(s)	149, 255
FokI	GGATG	1 cut(s)	585
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	149, 255
FspBI	CTAG	1 cut(s)	299
GluI	GCNGC	2 cut(s)	149, 255
GsaI	CCCAGC	1 cut(s)	516
HaeIII	GGCC	1 cut(s)	216
Hin1II	CATG	3 cut(s)	235, 508, 648
HinfI	GANTC	1 cut(s)	93
HphI	GGTGA	2 cut(s)	117, 461
Hpy166II	GTNNAC	1 cut(s)	560
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	2 cut(s)	90, 294
Hpy8I	GTNNAC	1 cut(s)	560
HpyAV	CCTTC	2 cut(s)	58, 138
HpyCH4III	ACNGT	2 cut(s)	283, 557
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	5 cut(s)	33, 148, 542, 551, 560
HpyF10VI	GCNNNNNNNGC	4 cut(s)	263, 548, 557, 566
HpyF3I	CTNAG	2 cut(s)	47, 333
HpySE526I	ACGT	1 cut(s)	86
Hsp92II	CATG	3 cut(s)	235, 508, 648
Kzo9I	GATC	1 cut(s)	534
LmnI	GCTCC	3 cut(s)	271, 329, 566
Lsp1109I	GCAGC	2 cut(s)	160, 266
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	1 cut(s)	86
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	1 cut(s)	536
MboI	GATC	1 cut(s)	534
MboII	GAAGA	5 cut(s)	9, 123, 195, 282, 544
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	1 cut(s)	534
MhlI	GDGCHC	3 cut(s)	8, 231, 562
MluCI	AATT	5 cut(s)	192, 275, 377, 495, 629
MnlI	CCTC	6 cut(s)	328, 445, 510, 572, 575, 609
MroXI	GAANNNNTTC	2 cut(s)	68, 141
MseI	TTAA	4 cut(s)	104, 176, 342, 357
MspA1I	CMGCKG	1 cut(s)	257
MunI	CAATTG	1 cut(s)	192
MvnI	CGCG	1 cut(s)	438
MwoI	GCNNNNNNNGC	4 cut(s)	263, 548, 557, 566
NdeII	GATC	1 cut(s)	534
NlaIII	CATG	3 cut(s)	235, 508, 648
NlaIV	GGNNCC	1 cut(s)	470
NmuCI	GTSAC	1 cut(s)	308
PdmI	GAANNNNTTC	2 cut(s)	68, 141
PfeI	GAWTC	1 cut(s)	93
PkrI	GCNGC	2 cut(s)	150, 256
Psp124BI	GAGCTC	1 cut(s)	8
PspFI	CCCAGC	1 cut(s)	512
PspN4I	GGNNCC	1 cut(s)	470
PspPI	GGNCC	2 cut(s)	469, 525
PsrI	GAACNNNNNNTAC	2 cut(s)	568, 600
PstI	CTGCAG	2 cut(s)	150, 544
PstNI	CAGNNNCTG	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	534
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	28, 52
RsaNI	GTAC	2 cut(s)	27, 51
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	4 cut(s)	104, 176, 342, 357
SatI	GCNGC	2 cut(s)	149, 255
Sau3AI	GATC	1 cut(s)	534
Sau96I	GGNCC	2 cut(s)	469, 525
ScaI	AGTACT	1 cut(s)	52
SduI	GDGCHC	3 cut(s)	8, 231, 562
SfaNI	GCATC	1 cut(s)	23
SfcI	CTRYAG	3 cut(s)	146, 282, 540
SinI	GGWCC	2 cut(s)	469, 525
Sse9I	AATT	5 cut(s)	192, 275, 377, 495, 629
SsiI	CCGC	1 cut(s)	436
SspMI	CTAG	1 cut(s)	299
SstI	GAGCTC	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	472
TaaI	ACNGT	2 cut(s)	283, 557
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	1 cut(s)	399
TasI	AATT	5 cut(s)	192, 275, 377, 495, 629
TatI	WGTACW	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	93
Tru1I	TTAA	4 cut(s)	104, 176, 342, 357
Tru9I	TTAA	4 cut(s)	104, 176, 342, 357
TscAI	CASTG	2 cut(s)	253, 376
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	2 cut(s)	148, 254
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	1 cut(s)	622
TspGWI	ACGGA	2 cut(s)	76, 538
TspRI	CASTG	2 cut(s)	253, 376
VneI	GTGCAC	1 cut(s)	558
VpaK11BI	GGWCC	2 cut(s)	469, 525
XapI	RAATTY	3 cut(s)	275, 495, 629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	479
XmnI	GAANNNNTTC	2 cut(s)	68, 141
XspI	CTAG	1 cut(s)	299
ZrmI	AGTACT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.