Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0007804

Physical Location & Seq

Genomic Coordinates Forward (+)

37672427 .. 37674535

Gene Structure 2109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1244300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAATTCCTTGGCATCTTCACTTGGCACTTGCAGTCCCAGAAACTTGAAAACACCCAACATTTTGCTCCAAAGGGATCATCTCAGCAAATCAGAAGCACCAAAACTCAATATCTTAAGCCACCCACACAGGAGCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCCCAACAACTGCAGAATAATGAGAAGCCAAATTTGTTCAGCAGAAGAGAAGCAATTGGTTTTGGCTTCTGCTTTGGGCTTCTTGATGTGCTTTTGCTTCCTCAGCCCACAAAAGCAGCTGAGGGGGCAGCAGCTTGTGAGCTAACCGTGGCTCCATCTGGCCTTGCTTTCTGTGACAAAGTTGTGGGGTATGGCCCTGAGGCTGTTCAAGGACAGCTGATTAAGGCACACTATGTTGGGAAATTGGAGAATGGAAAGGTGTTTGACAGCAGCTACAATCGTGGGAAACCTCTTACTTTTCGTGTCGGTGTTGGTGAGGTCATCAAAGGGTGGGATCAAGGTATTCTAGGCGGTGATGGGATTCCTCCAATGCTTGCGGGGGGGAAACGCGTGTTGAAGCTTCCTCCGGAACTTGCGTATGGTGGAAGAGGAGCTGGGTGTAGAGGAGGCTCGTGTATCATTCCACCAGATTCAGTTCTTCTGTTTGATGTGGAATTCGTAGGCAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

225

Amino Acids

23.66

Weight (kDa)

9.05

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	120 - 220	3e-28	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45680
fragaria_vesca	FvH4_3g13210
malus_domestica	MD05G1244300.v1.1
prunus_persica	Prupe.4G119400_v2.0.a1
pyrus_communis	pycom05g22070
rosa_chinensis	RchiOBHm_Chr5g0021551 RchiOBHm_Chr7g0219431
rosa_laevigata	RLG00000032614
rosa_multiflora	Rmu_sc0002052.1_g000013 Rmu_sc0002460.1_g000022 Rmu_sc0003767.1_g000013 Rmu_sc0023070.1_g000005
rosa_roxburghii	Rroxscaffold_1G00057100
rosa_rugosa	Rorug07G0185000 Rorug07G0185100
rosa_samantha	Rh5AG156500 Rh5CG170200 Rh5DG156400 Rh7AG327900 Rh7BG317900 Rh7CG345300 Rh7DG323300
rosa_wichuraiana	Rw7G027660 Rw7G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	552
AccIII	TCCGGA	1 cut(s)	568
AciI	CCGC	2 cut(s)	513, 539
AclWI	GGATC	2 cut(s)	84, 504
AcsI	RAATTY	3 cut(s)	4, 193, 656
AflII	CTTAAG	1 cut(s)	115
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	3 cut(s)	49, 371, 559
AluBI	AGCT	8 cut(s)	135, 281, 296, 304, 379, 435, 562, 596
AluI	AGCT	8 cut(s)	135, 281, 296, 304, 379, 435, 562, 596
AlwI	GGATC	2 cut(s)	84, 504
Aor13HI	TCCGGA	1 cut(s)	568
AoxI	GGCC	2 cut(s)	322, 355
ApeKI	GCWGC	4 cut(s)	278, 290, 293, 432
ApoI	RAATTY	3 cut(s)	4, 193, 656
AspS9I	GGNCC	1 cut(s)	356
AsuHPI	GGTGA	2 cut(s)	488, 527
AxyI	CCTNAGG	1 cut(s)	360
BauI	CACGAG	1 cut(s)	613
BbvCI	CCTCAGC	2 cut(s)	264, 282
BbvI	GCAGC	4 cut(s)	290, 302, 305, 444
BccI	CCATC	2 cut(s)	325, 512
BfaI	CTAG	1 cut(s)	509
BfmI	CTRYAG	1 cut(s)	173
BfrI	CTTAAG	1 cut(s)	115
BisI	GCNGC	4 cut(s)	279, 291, 294, 433
BlsI	GCNGC	4 cut(s)	280, 292, 295, 434
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	1 cut(s)	315
BmsI	GCATC	1 cut(s)	23
Bpu10I	CCTNAGC	2 cut(s)	264, 282
BsaJI	CCNNGG	2 cut(s)	9, 309
BsaWI	WCCGGW	1 cut(s)	568
BsaXI	ACNNNNNCTCC	2 cut(s)	298, 328
Bse21I	CCTNAGG	1 cut(s)	360
BseAI	TCCGGA	1 cut(s)	568
BseDI	CCNNGG	2 cut(s)	9, 309
BseMII	CTCAG	4 cut(s)	97, 273, 278, 351
BseRI	GAGGAG	2 cut(s)	606, 621
BseXI	GCAGC	4 cut(s)	290, 302, 305, 444
BseYI	CCCAGC	1 cut(s)	596
Bsh1236I	CGCG	1 cut(s)	552
BshFI	GGCC	2 cut(s)	324, 357
BsiSI	CCGG	1 cut(s)	569
BslFI	GGGAC	1 cut(s)	21
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	2 cut(s)	324, 357
Bsp13I	TCCGGA	1 cut(s)	568
Bsp143I	GATC	2 cut(s)	76, 496
BspACI	CCGC	2 cut(s)	513, 539
BspANI	GGCC	2 cut(s)	324, 357
BspCNI	CTCAG	4 cut(s)	96, 274, 277, 352
BspEI	TCCGGA	1 cut(s)	568
BspFNI	CGCG	1 cut(s)	552
BspLI	GGNNCC	1 cut(s)	315
BspMAI	CTGCAG	1 cut(s)	177
BspPI	GGATC	2 cut(s)	84, 504
BspTI	CTTAAG	1 cut(s)	115
BssECI	CCNNGG	2 cut(s)	9, 309
BssMI	GATC	2 cut(s)	76, 496
BssSI	CACGAG	1 cut(s)	613
BssT1I	CCWWGG	1 cut(s)	9
Bst2BI	CACGAG	1 cut(s)	613
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	2 cut(s)	202, 583
BstAFI	CTTAAG	1 cut(s)	115
BstC8I	GCNNGC	2 cut(s)	537, 668
BstDEI	CTNAG	4 cut(s)	83, 264, 282, 360
BstDSI	CCRYGG	1 cut(s)	309
BstFNI	CGCG	1 cut(s)	552
BstKTI	GATC	2 cut(s)	79, 499
BstMBI	GATC	2 cut(s)	76, 496
BstMWI	GCNNNNNNNGC	2 cut(s)	265, 287
BstSFI	CTRYAG	1 cut(s)	173
BstUI	CGCG	1 cut(s)	552
BstV1I	GCAGC	4 cut(s)	290, 302, 305, 444
Bsu36I	CCTNAGG	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	324, 357
BtgI	CCRYGG	1 cut(s)	309
Cac8I	GCNNGC	2 cut(s)	537, 668
Cfr13I	GGNCC	1 cut(s)	356
CviAII	CATG	1 cut(s)	672
DdeI	CTNAG	4 cut(s)	83, 264, 282, 360
DpnI	GATC	2 cut(s)	78, 498
DpnII	GATC	2 cut(s)	76, 496
Eam1104I	CTCTTC	2 cut(s)	202, 583
EarI	CTCTTC	2 cut(s)	202, 583
Eco130I	CCWWGG	1 cut(s)	9
Eco81I	CCTNAGG	1 cut(s)	360
EcoRI	GAATTC	2 cut(s)	4, 656
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	1 cut(s)	675
FaiI	YATR	4 cut(s)	354, 396, 582, 673
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	1 cut(s)	671
FauI	CCCGC	1 cut(s)	532
Fnu4HI	GCNGC	4 cut(s)	279, 291, 294, 433
Fsp4HI	GCNGC	4 cut(s)	279, 291, 294, 433
FspBI	CTAG	1 cut(s)	509
GluI	GCNGC	4 cut(s)	279, 291, 294, 433
GsaI	CCCAGC	1 cut(s)	600
HaeIII	GGCC	2 cut(s)	324, 357
HapII	CCGG	1 cut(s)	569
Hin1II	CATG	1 cut(s)	675
HindIII	AAGCTT	1 cut(s)	560
HinfI	GANTC	2 cut(s)	523, 632
HpaII	CCGG	1 cut(s)	569
HphI	GGTGA	2 cut(s)	488, 527
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	2 cut(s)	245, 569
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4V	TGCA	2 cut(s)	33, 175
HpyF10VI	GCNNNNNNNGC	2 cut(s)	265, 287
HpyF3I	CTNAG	4 cut(s)	83, 264, 282, 360
Hsp92II	CATG	1 cut(s)	675
Kpn2I	TCCGGA	1 cut(s)	568
Kzo9I	GATC	2 cut(s)	76, 496
LmnI	GCTCC	4 cut(s)	72, 132, 319, 593
LpnPI	CCDG	7 cut(s)	52, 115, 306, 372, 582, 582, 642
Lsp1109I	GCAGC	4 cut(s)	290, 302, 305, 444
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	509
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	2 cut(s)	78, 498
MboI	GATC	2 cut(s)	76, 496
MfeI	CAATTG	1 cut(s)	216
MluCI	AATT	5 cut(s)	4, 193, 216, 404, 656
MluI	ACGCGT	1 cut(s)	550
MroI	TCCGGA	1 cut(s)	568
MseI	TTAA	2 cut(s)	116, 384
MspA1I	CMGCKG	2 cut(s)	281, 379
MspCI	CTTAAG	1 cut(s)	115
MspI	CCGG	1 cut(s)	569
MunI	CAATTG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	552
MwoI	GCNNNNNNNGC	2 cut(s)	265, 287
NdeII	GATC	2 cut(s)	76, 496
NlaIII	CATG	1 cut(s)	675
NlaIV	GGNNCC	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	335
PfeI	GAWTC	2 cut(s)	523, 632
PkrI	GCNGC	4 cut(s)	280, 292, 295, 434
PspFI	CCCAGC	1 cut(s)	596
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	356
PstI	CTGCAG	1 cut(s)	177
PvuII	CAGCTG	2 cut(s)	281, 379
SaqAI	TTAA	2 cut(s)	116, 384
SatI	GCNGC	4 cut(s)	279, 291, 294, 433
Sau3AI	GATC	2 cut(s)	76, 496
Sau96I	GGNCC	1 cut(s)	356
SfaNI	GCATC	1 cut(s)	23
SfcI	CTRYAG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	5 cut(s)	4, 193, 216, 404, 656
SsiI	CCGC	2 cut(s)	513, 539
SspMI	CTAG	1 cut(s)	509
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	310
TasI	AATT	5 cut(s)	4, 193, 216, 404, 656
TfiI	GAWTC	2 cut(s)	523, 632
Tru1I	TTAA	2 cut(s)	116, 384
Tru9I	TTAA	2 cut(s)	116, 384
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	4 cut(s)	278, 290, 293, 432
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	115
XapI	RAATTY	3 cut(s)	4, 193, 656
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.