Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007804

Physical Location & Seq

Genomic Coordinates Reverse (-)

15882559 .. 15884006

Gene Structure 1448 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG170200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAGCTCGGTGGCATCTTCCCTTGGCACTTGCAATCCCAGAAAGCTCAGAACATTCAGTACTCTACCACCGAAGAATTTCAATGCCCCTAAAACCTCAAGAATCAAAATCTTAAGCCAGGCCCAGAAAAGCTCACCTTGTTCTGAAAATGTTCTGCAGCTAAATAATGAGAAGCCAAGTTTATTAAGGAGAAGAGAAGCAATTGGTTTTGGCTTCTGCTTTGGCCTTGTTGATGTGCTCTTGCCAGCTCAACCCACTGAAGCAGCTGAAGTTGCTCCTTGTGAATTTACTGTAGCTCCTTCTGGACTTGCTTTCTGTGACAAAGTAGTAGGGAAGGGAGCTGAGGCTGTTAAGGGACAGATGATTAAGGCACACTACACTGGGAAATTGGAGAATGGCAAGGTGTTCGATAGTAGCTATAATCGTGGGAAGCCCCTTTCATTCCGAATTGGTGCTGGTGAGGTAATTAAAGGGTGGGACCAAGGTATTCTTGGTGGCGATGGAATTCCTCCCATGCTTGCTGGGGGAAAGCGCACCTTGAAGATCCCTGCAGAACTTGCATATGGTGCACGGGGAGCTGGGTGTAGAGGAGGTTCGTGTATTATTCCTCCGTATTCAGTTCTTTTGTTCGATGTGGAATTCATTGGCAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

218

Amino Acids

23.08

Weight (kDa)

9.47

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	115 - 214	2.8e-29	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45680
fragaria_vesca	FvH4_3g13210
malus_domestica	MD05G1244300.v1.1
prunus_persica	Prupe.4G119400_v2.0.a1
pyrus_communis	pycom05g22070
rosa_chinensis	RchiOBHm_Chr5g0021551 RchiOBHm_Chr7g0219431
rosa_laevigata	RLG00000032614
rosa_multiflora	Rmu_sc0002052.1_g000013 Rmu_sc0002460.1_g000022 Rmu_sc0003767.1_g000013 Rmu_sc0023070.1_g000005
rosa_roxburghii	Rroxscaffold_1G00057100
rosa_rugosa	Rorug07G0185000 Rorug07G0185100
rosa_samantha	Rh5AG156500 Rh5CG170200 Rh5DG156400 Rh7AG327900 Rh7BG317900 Rh7CG345300 Rh7DG323300
rosa_wichuraiana	Rw7G027660 Rw7G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	538
AcsI	RAATTY	4 cut(s)	76, 284, 504, 638
AcuI	CTGAAG	2 cut(s)	279, 288
AfaI	GTAC	1 cut(s)	61
AflII	CTTAAG	1 cut(s)	112
AgsI	TTSAA	2 cut(s)	82, 541
AjnI	CCWGG	1 cut(s)	117
Alw21I	GWGCWC	3 cut(s)	8, 240, 571
Alw44I	GTGCAC	1 cut(s)	567
AlwI	GGATC	1 cut(s)	538
AoxI	GGCC	2 cut(s)	120, 223
ApaLI	GTGCAC	1 cut(s)	567
ApeKI	GCWGC	2 cut(s)	157, 263
ApoI	RAATTY	4 cut(s)	76, 284, 504, 638
Asp700I	GAANNNNTTC	2 cut(s)	77, 150
AspLEI	GCGC	1 cut(s)	534
AspS9I	GGNCC	2 cut(s)	121, 478
AsuHPI	GGTGA	2 cut(s)	126, 470
AvaII	GGWCC	1 cut(s)	478
BaeGI	GKGCMC	1 cut(s)	571
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	3 cut(s)	8, 240, 571
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	169, 275
BccI	CCATC	1 cut(s)	494
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BciT130I	CCWGG	1 cut(s)	119
BfmI	CTRYAG	3 cut(s)	155, 291, 549
BfrI	CTTAAG	1 cut(s)	112
BisI	GCNGC	2 cut(s)	158, 264
BlsI	GCNGC	2 cut(s)	159, 265
BmcAI	AGTACT	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	1 cut(s)	478
BmgT120I	GGNCC	2 cut(s)	121, 478
BmiI	GGNNCC	1 cut(s)	479
BmrFI	CCNGG	1 cut(s)	119
BmrI	ACTGGG	1 cut(s)	390
BmsI	GCATC	1 cut(s)	23
BmuI	ACTGGG	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	82
BsaJI	CCNNGG	2 cut(s)	22, 481
BsaXI	ACNNNNNCTCC	2 cut(s)	280, 310
Bse1I	ACTGG	1 cut(s)	385
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	2 cut(s)	22, 481
BseMII	CTCAG	2 cut(s)	61, 333
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	1 cut(s)	603
BseSI	GKGCMC	1 cut(s)	571
BseXI	GCAGC	2 cut(s)	169, 275
BseYI	CCCAGC	2 cut(s)	521, 578
BshFI	GGCC	2 cut(s)	122, 225
BsiHKAI	GWGCWC	3 cut(s)	8, 240, 571
BslFI	GGGAC	2 cut(s)	369, 491
BsmFI	GGGAC	2 cut(s)	369, 491
BsnI	GGCC	2 cut(s)	122, 225
Bsp1286I	GDGCHC	3 cut(s)	8, 240, 571
Bsp143I	GATC	1 cut(s)	543
BspANI	GGCC	2 cut(s)	122, 225
BspCNI	CTCAG	2 cut(s)	60, 334
BspLI	GGNNCC	1 cut(s)	479
BspMAI	CTGCAG	2 cut(s)	159, 553
BspPI	GGATC	1 cut(s)	538
BspTI	CTTAAG	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	2 cut(s)	22, 481
BssMI	GATC	1 cut(s)	543
BssT1I	CCWWGG	2 cut(s)	22, 481
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	1 cut(s)	187
BstAFI	CTTAAG	1 cut(s)	112
BstAPI	GCANNNNNTGC	2 cut(s)	557, 566
BstC8I	GCNNGC	2 cut(s)	246, 519
BstDEI	CTNAG	2 cut(s)	47, 342
BstHHI	GCGC	1 cut(s)	534
BstKTI	GATC	1 cut(s)	546
BstMBI	GATC	1 cut(s)	543
BstMWI	GCNNNNNNNGC	4 cut(s)	272, 557, 566, 575
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	3 cut(s)	155, 291, 549
BstSLI	GKGCMC	1 cut(s)	571
BstV1I	GCAGC	2 cut(s)	169, 275
BstX2I	RGATCY	1 cut(s)	543
BstYI	RGATCY	1 cut(s)	543
BsuRI	GGCC	2 cut(s)	122, 225
BtgZI	GCGATG	1 cut(s)	513
BtsIMutI	CAGTG	2 cut(s)	255, 378
Cac8I	GCNNGC	2 cut(s)	246, 519
CfoI	GCGC	1 cut(s)	534
Cfr13I	GGNCC	2 cut(s)	121, 478
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	2 cut(s)	514, 654
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	2 cut(s)	47, 342
DpnI	GATC	1 cut(s)	545
DpnII	GATC	1 cut(s)	543
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	22, 481
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	478
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	279, 288
EcoICRI	GAGCTC	1 cut(s)	6
EcoRI	GAATTC	2 cut(s)	504, 638
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	2 cut(s)	22, 481
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	22, 481
FaeI	CATG	2 cut(s)	517, 657
FaiI	YATR	5 cut(s)	420, 515, 562, 564, 655
FalI	AAGNNNNNCTT	6 cut(s)	121, 153, 474, 506, 521, 553
FaqI	GGGAC	2 cut(s)	369, 491
FatI	CATG	2 cut(s)	513, 653
FauNDI	CATATG	1 cut(s)	562
Fnu4HI	GCNGC	2 cut(s)	158, 264
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	158, 264
GlaI	GCGC	1 cut(s)	533
GluI	GCNGC	2 cut(s)	158, 264
GsaI	CCCAGC	2 cut(s)	525, 582
HaeIII	GGCC	2 cut(s)	122, 225
HhaI	GCGC	1 cut(s)	534
Hin1II	CATG	2 cut(s)	517, 657
Hin6I	GCGC	1 cut(s)	532
HinP1I	GCGC	1 cut(s)	532
HinfI	GANTC	1 cut(s)	102
HphI	GGTGA	2 cut(s)	126, 470
Hpy166II	GTNNAC	1 cut(s)	569
Hpy188I	TCNGA	3 cut(s)	50, 145, 446
Hpy188III	TCNNGA	2 cut(s)	99, 303
Hpy8I	GTNNAC	1 cut(s)	569
HpyAV	CCTTC	2 cut(s)	309, 328
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4V	TGCA	5 cut(s)	33, 157, 551, 560, 569
HpyF10VI	GCNNNNNNNGC	4 cut(s)	272, 557, 566, 575
HpyF3I	CTNAG	2 cut(s)	47, 342
Hsp92II	CATG	2 cut(s)	517, 657
HspAI	GCGC	1 cut(s)	532
Kzo9I	GATC	1 cut(s)	543
LmnI	GCTCC	4 cut(s)	280, 301, 338, 575
Lsp1109I	GCAGC	2 cut(s)	169, 275
LweI	GCATC	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	1 cut(s)	545
MboI	GATC	1 cut(s)	543
MboII	GAAGA	4 cut(s)	9, 85, 204, 553
MfeI	CAATTG	1 cut(s)	201
MflI	RGATCY	1 cut(s)	543
MhlI	GDGCHC	3 cut(s)	8, 240, 571
MluCI	AATT	8 cut(s)	76, 201, 284, 386, 447, 465, 504, 638
MnlI	CCTC	7 cut(s)	106, 337, 454, 519, 581, 584, 618
MroXI	GAANNNNTTC	2 cut(s)	77, 150
MseI	TTAA	5 cut(s)	113, 185, 351, 366, 468
MspA1I	CMGCKG	1 cut(s)	266
MspCI	CTTAAG	1 cut(s)	112
MspR9I	CCNGG	1 cut(s)	119
MunI	CAATTG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	4 cut(s)	272, 557, 566, 575
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	1 cut(s)	543
NlaIII	CATG	2 cut(s)	517, 657
NlaIV	GGNNCC	1 cut(s)	479
NmuCI	GTSAC	1 cut(s)	317
PdmI	GAANNNNTTC	2 cut(s)	77, 150
PfeI	GAWTC	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	159, 265
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	117
PspFI	CCCAGC	2 cut(s)	521, 578
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	479
PspPI	GGNCC	2 cut(s)	121, 478
PsrI	GAACNNNNNNTAC	4 cut(s)	43, 75, 577, 609
PstI	CTGCAG	2 cut(s)	159, 553
PsuI	RGATCY	1 cut(s)	543
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	5 cut(s)	113, 185, 351, 366, 468
SatI	GCNGC	2 cut(s)	158, 264
Sau3AI	GATC	1 cut(s)	543
Sau96I	GGNCC	2 cut(s)	121, 478
ScaI	AGTACT	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	3 cut(s)	8, 240, 571
SfaNI	GCATC	1 cut(s)	23
SfcI	CTRYAG	3 cut(s)	155, 291, 549
SinI	GGWCC	1 cut(s)	478
SmlI	CTYRAG	2 cut(s)	97, 112
SmoI	CTYRAG	2 cut(s)	97, 112
Sse9I	AATT	8 cut(s)	76, 201, 284, 386, 447, 465, 504, 638
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	2 cut(s)	22, 481
TaaI	ACNGT	1 cut(s)	292
TaqI	TCGA	2 cut(s)	408, 630
TasI	AATT	8 cut(s)	76, 201, 284, 386, 447, 465, 504, 638
TatI	WGTACW	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	102
Tru1I	TTAA	5 cut(s)	113, 185, 351, 366, 468
Tru9I	TTAA	5 cut(s)	113, 185, 351, 366, 468
TscAI	CASTG	2 cut(s)	262, 385
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	2 cut(s)	157, 263
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	2 cut(s)	429, 631
TspGWI	ACGGA	1 cut(s)	600
TspRI	CASTG	2 cut(s)	262, 385
Vha464I	CTTAAG	1 cut(s)	112
VneI	GTGCAC	1 cut(s)	567
VpaK11BI	GGWCC	1 cut(s)	478
XapI	RAATTY	4 cut(s)	76, 284, 504, 638
XcmI	CCANNNNNNNNNTGG	1 cut(s)	488
XmnI	GAANNNNTTC	2 cut(s)	77, 150
ZrmI	AGTACT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.